RNA–Protein interactions for RNA: ENST00000588410.1

TPM4-208, Transcript of tropomyosin 4, humanhuman

TSL 4

Gene TPM4, Length 563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4-208ENST00000588410 MRPL54Q6P161 138 aaKnown RBP12.6□□□□□ -0.39
TPM4-208ENST00000588410 NRACQ8N912 160 aa12.6□□□□□ -0.39
TPM4-208ENST00000588410 IGHV3-64A0A075B6Q5 118 aa12.59□□□□□ -0.39
TPM4-208ENST00000588410 LINC00862A6NCI5 91 aa12.59□□□□□ -0.39
TPM4-208ENST00000588410 F8W036 122 aa12.59□□□□□ -0.39
TPM4-208ENST00000588410 CKS2P33552 79 aa12.59□□□□□ -0.39
TPM4-208ENST00000588410 SDIM1Q6ZPB5 146 aa12.59□□□□□ -0.39
TPM4-208ENST00000588410 MRPL52Q86TS9 123 aaKnown RBP12.59□□□□□ -0.39
TPM4-208ENST00000588410 LINC00959A0A1B0GUT2 108 aa12.58□□□□□ -0.4
TPM4-208ENST00000588410 XCL1P47992 114 aa12.58□□□□□ -0.4
TPM4-208ENST00000588410 HBBP68871 147 aa12.58□□□□□ -0.4
TPM4-208ENST00000588410 SS18Q15532 418 aa12.58□□□□□ -0.4
TPM4-208ENST00000588410 C15orf56Q8N910 161 aa12.58□□□□□ -0.4
TPM4-208ENST00000588410 HIGD2BQ4VC39 106 aa12.57□□□□□ -0.4
TPM4-208ENST00000588410 ZNF664Q8N3J9 261 aa12.57□□□□□ -0.4
TPM4-208ENST00000588410 DPH3Q96FX2 82 aa12.57□□□□□ -0.4
TPM4-208ENST00000588410 C20orf78Q9BR46 151 aa12.57□□□□□ -0.4
TPM4-208ENST00000588410 CDC42SE2Q9NRR3 84 aa12.57□□□□□ -0.4
TPM4-208ENST00000588410 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12.57□□□□□ -0.4
TPM4-208ENST00000588410 CCL25O15444 150 aa12.56□□□□□ -0.4
TPM4-208ENST00000588410 FOXI1Q12951 378 aa12.56□□□□□ -0.4
TPM4-208ENST00000588410 TMEM18Q96B42 140 aa12.56□□□□□ -0.4
TPM4-208ENST00000588410 SLPIP03973 132 aa12.55□□□□□ -0.4
TPM4-208ENST00000588410 SRRM2Q9UQ35 2752 aaKnown RBP12.54□□□□□ -0.4
TPM4-208ENST00000588410 TRBV24-1A0A075B6N3 115 aa12.54□□□□□ -0.4
TPM4-208ENST00000588410 TCAPO15273 167 aa12.54□□□□□ -0.4
TPM4-208ENST00000588410 TNFRSF6BO95407 300 aa12.54□□□□□ -0.4
TPM4-208ENST00000588410 GVQW2A0A096LPI5 108 aaPredicted RBP12.53□□□□□ -0.4
TPM4-208ENST00000588410 A0A1B0GXF2 115 aa12.53□□□□□ -0.4
TPM4-208ENST00000588410 D6R8Y8 96 aa12.53□□□□□ -0.4
TPM4-208ENST00000588410 PNRC1Q12796 327 aaPredicted RBP12.53□□□□□ -0.4
TPM4-208ENST00000588410 ATP5L2Q7Z4Y8 100 aa12.53□□□□□ -0.4
TPM4-208ENST00000588410 PANO1I0J062 215 aa12.52□□□□□ -0.41
TPM4-208ENST00000588410 RPL37AP61513 92 aaKnown RBP12.52□□□□□ -0.41
TPM4-208ENST00000588410 RPL32P62910 135 aaKnown RBP12.52□□□□□ -0.41
TPM4-208ENST00000588410 CD164L2Q6UWJ8 174 aa12.52□□□□□ -0.41
TPM4-208ENST00000588410 UBE2D4Q9Y2X8 147 aa12.52□□□□□ -0.41
TPM4-208ENST00000588410 CSDC2Q9Y534 153 aaKnown RBP12.52□□□□□ -0.41
TPM4-208ENST00000588410 IGHV1-58A0A0C4DH39 117 aa12.51□□□□□ -0.41
TPM4-208ENST00000588410 J3QL48 77 aa12.51□□□□□ -0.41
TPM4-208ENST00000588410 PPBPP02775 128 aa12.51□□□□□ -0.41
TPM4-208ENST00000588410 MT-ND4LP03901 98 aa12.51□□□□□ -0.41
TPM4-208ENST00000588410 C1orf196B1AJZ1 125 aa12.5□□□□□ -0.41
TPM4-208ENST00000588410 SMIM2Q9BVW6 85 aa12.5□□□□□ -0.41
TPM4-208ENST00000588410 PHOX2AO14813 284 aa12.49□□□□□ -0.41
TPM4-208ENST00000588410 NPYP01303 97 aa12.49□□□□□ -0.41
TPM4-208ENST00000588410 CIRBPQ14011 172 aaKnown RBP12.49□□□□□ -0.41
TPM4-208ENST00000588410 RNASE13Q5GAN3 156 aaKnown RBP12.49□□□□□ -0.41
TPM4-208ENST00000588410 ANAPC16Q96DE5 110 aa12.49□□□□□ -0.41
TPM4-208ENST00000588410 TIMM21Q9BVV7 248 aa12.49□□□□□ -0.41
TPM4-208ENST00000588410 TRAV13-1A0A0B4J241 112 aa12.48□□□□□ -0.41
TPM4-208ENST00000588410 CHTF8P0CG12 524 aa12.48□□□□□ -0.41
TPM4-208ENST00000588410 MALP21145 153 aa12.48□□□□□ -0.41
TPM4-208ENST00000588410 COX6A2Q02221 97 aa12.48□□□□□ -0.41
TPM4-208ENST00000588410 TMEM136Q6ZRR5 245 aa12.48□□□□□ -0.41
TPM4-208ENST00000588410 ORMDL3Q8N138 153 aa12.48□□□□□ -0.41
TPM4-208ENST00000588410 MYCBP2O75592 4640 aa12.47□□□□□ -0.41
TPM4-208ENST00000588410 ZNF561-AS1K7EIQ3 104 aa12.47□□□□□ -0.41
TPM4-208ENST00000588410 KRTAP10-4P60372 401 aaPredicted RBP12.47□□□□□ -0.41
TPM4-208ENST00000588410 CLLU1Q5K131 121 aa12.47□□□□□ -0.41
TPM4-208ENST00000588410 SPACA4Q8TDM5 124 aa12.47□□□□□ -0.41
TPM4-208ENST00000588410 FLG2Q5D862 2391 aaPredicted RBP12.47□□□□□ -0.41
TPM4-208ENST00000588410 A0A087WYN8 130 aa12.46□□□□□ -0.41
TPM4-208ENST00000588410 COX7A2LO14548 114 aa12.46□□□□□ -0.41
TPM4-208ENST00000588410 RAB5AP20339 215 aa12.46□□□□□ -0.41
TPM4-208ENST00000588410 Q6ZUT4 128 aa12.46□□□□□ -0.41
TPM4-208ENST00000588410 PRELID3AQ96N28 172 aa12.46□□□□□ -0.41
TPM4-208ENST00000588410 PKIGQ9Y2B9 76 aa12.46□□□□□ -0.41
TPM4-208ENST00000588410 RPL39P62891 51 aaKnown RBP12.45□□□□□ -0.42
TPM4-208ENST00000588410 PRSS3P2Q8NHM4 247 aa12.45□□□□□ -0.42
TPM4-208ENST00000588410 LINC00526Q96FQ7 95 aa12.45□□□□□ -0.42
TPM4-208ENST00000588410 HERC1Q15751 4861 aa12.45□□□□□ -0.42
TPM4-208ENST00000588410 IGKV2-24A0A0C4DH68 120 aa12.44□□□□□ -0.42
TPM4-208ENST00000588410 MAJINQ3KP22 176 aa12.44□□□□□ -0.42
TPM4-208ENST00000588410 CARD19Q96LW7 228 aa12.44□□□□□ -0.42
TPM4-208ENST00000588410 SPANXA1Q9NS26 97 aa12.44□□□□□ -0.42
TPM4-208ENST00000588410 DMBT1Q9UGM3 2413 aaPredicted RBP12.44□□□□□ -0.42
TPM4-208ENST00000588410 KRTAP29-1A8MX34 341 aaPredicted RBP12.43□□□□□ -0.42
TPM4-208ENST00000588410 SYCNQ0VAF6 134 aa12.42□□□□□ -0.42
TPM4-208ENST00000588410 LAMTOR2Q9Y2Q5 125 aa12.42□□□□□ -0.42
TPM4-208ENST00000588410 PLAC8Q9NZF1 115 aa12.41□□□□□ -0.42
TPM4-208ENST00000588410 LINC00474Q9P2X8 69 aa12.41□□□□□ -0.42
TPM4-208ENST00000588410 LOC389332A0A1B0GUA5 103 aa12.4□□□□□ -0.42
TPM4-208ENST00000588410 APOMO95445 188 aa12.4□□□□□ -0.42
TPM4-208ENST00000588410 UQCC3Q6UW78 93 aa12.4□□□□□ -0.42
TPM4-208ENST00000588410 C5orf38Q86SI9 138 aa12.4□□□□□ -0.42
TPM4-208ENST00000588410 C7orf33Q8WU49 177 aa12.4□□□□□ -0.42
TPM4-208ENST00000588410 MAP1LC3AQ9H492 121 aa12.4□□□□□ -0.42
TPM4-208ENST00000588410 IGLV4-69A0A075B6H9 119 aa12.39□□□□□ -0.43
TPM4-208ENST00000588410 IFI27P40305 119 aaPredicted RBP12.39□□□□□ -0.43
TPM4-208ENST00000588410 MRPS36P82909 103 aaKnown RBP12.39□□□□□ -0.43
TPM4-208ENST00000588410 A0A096LNI7 61 aa12.38□□□□□ -0.43
TPM4-208ENST00000588410 IFITM10A6NMD0 228 aa12.38□□□□□ -0.43
TPM4-208ENST00000588410 STPG4Q8N801 248 aa12.38□□□□□ -0.43
TPM4-208ENST00000588410 OPRPNQ99935 248 aaPredicted RBP12.38□□□□□ -0.43
TPM4-208ENST00000588410 PRSS47A8MTI9 375 aa12.37□□□□□ -0.43
TPM4-208ENST00000588410 OXTP01178 125 aa12.37□□□□□ -0.43
TPM4-208ENST00000588410 CAMK2N2Q96S95 79 aa12.37□□□□□ -0.43
TPM4-208ENST00000588410 TMEM218A2RU14 115 aa12.36□□□□□ -0.43
TPM4-208ENST00000588410 IMMP2LQ96T52 175 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 79.5 ms