RNA–Protein interactions for RNA: ENST00000587730.5

DDX39A-206, Transcript of DExD-box helicase 39A, humanhuman

TSL 1 (best)

Gene DDX39A, Length 1,813 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39A-206ENST00000587730 CSDC2Q9Y534 153 aaKnown RBP13.46□□□□□ -0.25
DDX39A-206ENST00000587730 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.46□□□□□ -0.26
DDX39A-206ENST00000587730 TRBV10-1A0A0K0K1A3 114 aa13.46□□□□□ -0.26
DDX39A-206ENST00000587730 IGKV2-29A2NJV5 120 aaPredicted RBP13.46□□□□□ -0.26
DDX39A-206ENST00000587730 IGHV4-31P0DP07 118 aa13.46□□□□□ -0.26
DDX39A-206ENST00000587730 ADAMTSL4-AS1Q5T5F5 129 aa13.46□□□□□ -0.26
DDX39A-206ENST00000587730 Q6ZSN1 163 aa13.46□□□□□ -0.26
DDX39A-206ENST00000587730 PPDPFQ9H3Y8 114 aa13.46□□□□□ -0.26
DDX39A-206ENST00000587730 MRPL23Q16540 153 aaKnown RBP13.45□□□□□ -0.26
DDX39A-206ENST00000587730 DEFB114Q30KQ6 69 aa13.45□□□□□ -0.26
DDX39A-206ENST00000587730 C2orf82Q6UX34 121 aa13.45□□□□□ -0.26
DDX39A-206ENST00000587730 SNCGO76070 127 aa13.44□□□□□ -0.26
DDX39A-206ENST00000587730 CITED1Q99966 193 aa13.44□□□□□ -0.26
DDX39A-206ENST00000587730 POLQO75417 2590 aa13.44□□□□□ -0.26
DDX39A-206ENST00000587730 TRAV8-4A0A0B4J246 113 aa13.43□□□□□ -0.26
DDX39A-206ENST00000587730 Q6Q795 121 aa13.43□□□□□ -0.26
DDX39A-206ENST00000587730 TMEM86BQ8N661 226 aa13.43□□□□□ -0.26
DDX39A-206ENST00000587730 BEX4Q9NWD9 120 aaPredicted RBP13.43□□□□□ -0.26
DDX39A-206ENST00000587730 ITPR2Q14571 2701 aa13.43□□□□□ -0.26
DDX39A-206ENST00000587730 IGLV5-39A0A0G2JS06 123 aa13.43□□□□□ -0.26
DDX39A-206ENST00000587730 LST1O00453 97 aa13.43□□□□□ -0.26
DDX39A-206ENST00000587730 MYO9AB2RTY4 2548 aa13.43□□□□□ -0.26
DDX39A-206ENST00000587730 APCP25054 2843 aa13.43□□□□□ -0.26
DDX39A-206ENST00000587730 FAM240AA0A1B0GVK7 77 aa13.42□□□□□ -0.26
DDX39A-206ENST00000587730 DAZ2Q13117 558 aaKnown RBP13.42□□□□□ -0.26
DDX39A-206ENST00000587730 DEFB136Q30KP8 78 aa13.42□□□□□ -0.26
DDX39A-206ENST00000587730 RNASE13Q5GAN3 156 aaKnown RBP13.42□□□□□ -0.26
DDX39A-206ENST00000587730 DAZ4Q86SG3 579 aaKnown RBP13.42□□□□□ -0.26
DDX39A-206ENST00000587730 DAZ3Q9NR90 486 aaKnown RBP13.42□□□□□ -0.26
DDX39A-206ENST00000587730 CDKN2A-AS1Q9UH64 79 aa13.42□□□□□ -0.26
DDX39A-206ENST00000587730 NRGNQ92686 78 aa13.41□□□□□ -0.26
DDX39A-206ENST00000587730 TMEM101Q96IK0 257 aa13.41□□□□□ -0.26
DDX39A-206ENST00000587730 CREBBPQ92793 2442 aa13.41□□□□□ -0.26
DDX39A-206ENST00000587730 RPL36AP83881 106 aaKnown RBP13.41□□□□□ -0.26
DDX39A-206ENST00000587730 LRRC75A-AS1Q8N1F1 130 aa13.41□□□□□ -0.26
DDX39A-206ENST00000587730 RPL36ALQ969Q0 106 aaKnown RBP13.41□□□□□ -0.26
DDX39A-206ENST00000587730 H7C423 109 aa13.4□□□□□ -0.26
DDX39A-206ENST00000587730 KRTAP10-9P60411 292 aa13.4□□□□□ -0.26
DDX39A-206ENST00000587730 GAGE2BQ13066 116 aa13.4□□□□□ -0.26
DDX39A-206ENST00000587730 GAGE2EQ4V326 116 aa13.4□□□□□ -0.26
DDX39A-206ENST00000587730 IL17DQ8TAD2 202 aa13.4□□□□□ -0.26
DDX39A-206ENST00000587730 GAGE2DQ9UEU5 116 aa13.4□□□□□ -0.26
DDX39A-206ENST00000587730 CMC4P56277 68 aaPredicted RBP13.39□□□□□ -0.27
DDX39A-206ENST00000587730 HERV-K104P63124 156 aa13.39□□□□□ -0.27
DDX39A-206ENST00000587730 DEFB121Q5J5C9 76 aa13.39□□□□□ -0.27
DDX39A-206ENST00000587730 ANAPC13Q9BS18 74 aa13.39□□□□□ -0.27
DDX39A-206ENST00000587730 C18orf65Q6ZTR6 163 aa13.39□□□□□ -0.27
DDX39A-206ENST00000587730 STHQ8IWL8 128 aa13.39□□□□□ -0.27
DDX39A-206ENST00000587730 IGHV3OR16-12A0A075B7B8 117 aa13.37□□□□□ -0.27
DDX39A-206ENST00000587730 IGHV3-38A0A0C4DH36 116 aa13.37□□□□□ -0.27
DDX39A-206ENST00000587730 KHDC1LQ5JSQ8 128 aa13.37□□□□□ -0.27
DDX39A-206ENST00000587730 Q9UF83 564 aa13.37□□□□□ -0.27
DDX39A-206ENST00000587730 MAP1AP78559 2803 aaPredicted RBP13.37□□□□□ -0.27
DDX39A-206ENST00000587730 TEX49A0A1B0GTD5 131 aa13.36□□□□□ -0.27
DDX39A-206ENST00000587730 K7EQD1 137 aa13.36□□□□□ -0.27
DDX39A-206ENST00000587730 LINC00242Q5T6M2 205 aa13.36□□□□□ -0.27
DDX39A-206ENST00000587730 LINC00308Q8TCZ7 52 aa13.36□□□□□ -0.27
DDX39A-206ENST00000587730 TRAV4A0A0B4J268 109 aa13.36□□□□□ -0.27
DDX39A-206ENST00000587730 MAPK1IP1LQ8NDC0 245 aa13.36□□□□□ -0.27
DDX39A-206ENST00000587730 SVEP1Q4LDE5 3571 aa13.36□□□□□ -0.27
DDX39A-206ENST00000587730 Q9H8V8 135 aa13.35□□□□□ -0.27
DDX39A-206ENST00000587730 TRAV26-1A0A087WT03 109 aa13.34□□□□□ -0.27
DDX39A-206ENST00000587730 A8MZ25 164 aa13.34□□□□□ -0.27
DDX39A-206ENST00000587730 PRM2P04554 102 aa13.34□□□□□ -0.27
DDX39A-206ENST00000587730 PRRC2AP48634 2157 aaKnown RBP13.34□□□□□ -0.27
DDX39A-206ENST00000587730 TRGV1A0A0A0MS02 117 aa13.34□□□□□ -0.27
DDX39A-206ENST00000587730 ACYP1P07311 99 aa13.34□□□□□ -0.27
DDX39A-206ENST00000587730 ODF3L2Q3SX64 289 aa13.34□□□□□ -0.27
DDX39A-206ENST00000587730 XCL2Q9UBD3 114 aa13.34□□□□□ -0.27
DDX39A-206ENST00000587730 SMIM1B2RUZ4 78 aa13.33□□□□□ -0.28
DDX39A-206ENST00000587730 ANKRD17O75179 2603 aaKnown RBP13.33□□□□□ -0.28
DDX39A-206ENST00000587730 COX7A2LO14548 114 aa13.32□□□□□ -0.28
DDX39A-206ENST00000587730 DEFB113Q30KQ7 82 aa13.32□□□□□ -0.28
DDX39A-206ENST00000587730 C1orf158Q8N1D5 194 aa13.32□□□□□ -0.28
DDX39A-206ENST00000587730 CSPG4Q6UVK1 2322 aa13.32□□□□□ -0.28
DDX39A-206ENST00000587730 NACAE9PAV3 2078 aa13.32□□□□□ -0.28
DDX39A-206ENST00000587730 NPC2P61916 151 aa13.32□□□□□ -0.28
DDX39A-206ENST00000587730 CLEC2BQ92478 149 aa13.32□□□□□ -0.28
DDX39A-206ENST00000587730 PF4P02776 101 aa13.31□□□□□ -0.28
DDX39A-206ENST00000587730 COX6A2Q02221 97 aa13.31□□□□□ -0.28
DDX39A-206ENST00000587730 TTC32Q5I0X7 151 aa13.31□□□□□ -0.28
DDX39A-206ENST00000587730 PRIMA1Q86XR5 153 aa13.31□□□□□ -0.28
DDX39A-206ENST00000587730 ZNF625Q96I27 306 aaPredicted RBP13.31□□□□□ -0.28
DDX39A-206ENST00000587730 CITED2Q99967 270 aaPredicted RBP13.31□□□□□ -0.28
DDX39A-206ENST00000587730 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP13.3□□□□□ -0.28
DDX39A-206ENST00000587730 CDC42SE2Q9NRR3 84 aa13.3□□□□□ -0.28
DDX39A-206ENST00000587730 TRACP01848 142 aa13.29□□□□□ -0.28
DDX39A-206ENST00000587730 SHISA2Q6UWI4 295 aa13.29□□□□□ -0.28
DDX39A-206ENST00000587730 C15orf53Q8NAA6 179 aa13.29□□□□□ -0.28
DDX39A-206ENST00000587730 PDZD2O15018 2839 aa13.29□□□□□ -0.28
DDX39A-206ENST00000587730 AKAP9Q99996 3911 aa13.29□□□□□ -0.28
DDX39A-206ENST00000587730 UBE2L6O14933 153 aa13.29□□□□□ -0.28
DDX39A-206ENST00000587730 NDUFV3P56181 108 aaKnown RBP13.29□□□□□ -0.28
DDX39A-206ENST00000587730 MEIG1Q5JSS6 88 aa13.29□□□□□ -0.28
DDX39A-206ENST00000587730 TMEM243Q9BU79 118 aa13.29□□□□□ -0.28
DDX39A-206ENST00000587730 GAGE5Q13069 117 aa13.28□□□□□ -0.28
DDX39A-206ENST00000587730 GAGE6Q13070 117 aa13.28□□□□□ -0.28
DDX39A-206ENST00000587730 CELSR1Q9NYQ6 3014 aa13.28□□□□□ -0.28
DDX39A-206ENST00000587730 FAM222AQ5U5X8 452 aa13.27□□□□□ -0.28
DDX39A-206ENST00000587730 C16orf74Q96GX8 76 aa13.27□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 67.2 ms