RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 MPV17L2Q567V2 206 aa7.33□□□□□ -1.24
SS18-213ENST00000579640 Q6ZN92 141 aa7.33□□□□□ -1.24
SS18-213ENST00000579640 STARD9Q9P2P6 4700 aa7.32□□□□□ -1.24
SS18-213ENST00000579640 IGLV4-3A0A075B6K6 122 aa7.32□□□□□ -1.24
SS18-213ENST00000579640 ZNF664Q8N3J9 261 aa7.32□□□□□ -1.24
SS18-213ENST00000579640 CDC42SE2Q9NRR3 84 aa7.32□□□□□ -1.24
SS18-213ENST00000579640 IFITM10A6NMD0 228 aa7.31□□□□□ -1.24
SS18-213ENST00000579640 K7EP13 123 aa7.31□□□□□ -1.24
SS18-213ENST00000579640 LGALS9CQ6DKI2 356 aa7.31□□□□□ -1.24
SS18-213ENST00000579640 Q8N976 141 aa7.31□□□□□ -1.24
SS18-213ENST00000579640 MAP1LC3CQ9BXW4 147 aa7.31□□□□□ -1.24
SS18-213ENST00000579640 VCX2Q9H322 139 aa7.31□□□□□ -1.24
SS18-213ENST00000579640 IGLV4-60A0A075B6I1 120 aa7.31□□□□□ -1.24
SS18-213ENST00000579640 TEX43Q6ZNM6 134 aa7.31□□□□□ -1.24
SS18-213ENST00000579640 Q6ZUT4 128 aa7.31□□□□□ -1.24
SS18-213ENST00000579640 LINC00173Q6ZV60 143 aa7.31□□□□□ -1.24
SS18-213ENST00000579640 BAALCQ8WXS3 180 aa7.31□□□□□ -1.24
SS18-213ENST00000579640 AMELXQ99217 191 aa7.31□□□□□ -1.24
SS18-213ENST00000579640 Q9H8V8 135 aa7.31□□□□□ -1.24
SS18-213ENST00000579640 PLECQ15149 4684 aaKnown RBP7.3□□□□□ -1.24
SS18-213ENST00000579640 IGHV3-30P01768 117 aa7.3□□□□□ -1.24
SS18-213ENST00000579640 IGHV3-33P01772 117 aa7.3□□□□□ -1.24
SS18-213ENST00000579640 PRSS1P07477 247 aa7.3□□□□□ -1.24
SS18-213ENST00000579640 IGHV3-30-3P0DP02 117 aa7.3□□□□□ -1.24
SS18-213ENST00000579640 IGHV3-30-5P0DP03 117 aa7.3□□□□□ -1.24
SS18-213ENST00000579640 PMVKQ15126 192 aa7.3□□□□□ -1.24
SS18-213ENST00000579640 C10orf126Q8N4M7 172 aa7.3□□□□□ -1.24
SS18-213ENST00000579640 FAM104AQ969W3 186 aa7.3□□□□□ -1.24
SS18-213ENST00000579640 OPRPNQ99935 248 aaPredicted RBP7.3□□□□□ -1.24
SS18-213ENST00000579640 C2orf88Q9BSF0 95 aa7.3□□□□□ -1.24
SS18-213ENST00000579640 TRAV9-2A0A087WT02 112 aa7.29□□□□□ -1.24
SS18-213ENST00000579640 TRAV12-1A0A0B4J245 112 aa7.29□□□□□ -1.24
SS18-213ENST00000579640 ANGP03950 147 aaKnown RBP7.29□□□□□ -1.24
SS18-213ENST00000579640 SPATA12Q7Z6I5 190 aa7.29□□□□□ -1.24
SS18-213ENST00000579640 Q8N3U1 123 aa7.29□□□□□ -1.24
SS18-213ENST00000579640 SYS1-DBNDD2H3BUS1 97 aa7.28□□□□□ -1.24
SS18-213ENST00000579640 CCL25O15444 150 aa7.28□□□□□ -1.24
SS18-213ENST00000579640 C3orf79P0CE67 100 aa7.28□□□□□ -1.24
SS18-213ENST00000579640 KRTDAPP60985 99 aa7.28□□□□□ -1.24
SS18-213ENST00000579640 PET117Q6UWS5 81 aa7.28□□□□□ -1.24
SS18-213ENST00000579640 OR10D4PQ8NGN7 298 aa7.28□□□□□ -1.24
SS18-213ENST00000579640 KRTAP3-3Q9BYR6 98 aa7.28□□□□□ -1.24
SS18-213ENST00000579640 KRTAP3-2Q9BYR7 98 aa7.28□□□□□ -1.24
SS18-213ENST00000579640 CST9LQ9H4G1 147 aa7.28□□□□□ -1.24
SS18-213ENST00000579640 KLK12Q9UKR0 248 aa7.28□□□□□ -1.24
SS18-213ENST00000579640 PRSS29PA6NIE9 313 aa7.27□□□□□ -1.25
SS18-213ENST00000579640 CRPP02741 224 aa7.27□□□□□ -1.25
SS18-213ENST00000579640 REG3AQ06141 175 aa7.27□□□□□ -1.25
SS18-213ENST00000579640 RNASE13Q5GAN3 156 aaKnown RBP7.27□□□□□ -1.25
SS18-213ENST00000579640 LINC00269Q8N2A0 174 aa7.27□□□□□ -1.25
SS18-213ENST00000579640 PRR34Q9NV39 138 aa7.27□□□□□ -1.25
SS18-213ENST00000579640 TTC32Q5I0X7 151 aa7.27□□□□□ -1.25
SS18-213ENST00000579640 LINC00476Q8WZB0 136 aa7.27□□□□□ -1.25
SS18-213ENST00000579640 C20orf202A1L168 122 aa7.26□□□□□ -1.25
SS18-213ENST00000579640 IBA57-AS1B1ANH7 110 aa7.26□□□□□ -1.25
SS18-213ENST00000579640 H0Y8G0 127 aa7.26□□□□□ -1.25
SS18-213ENST00000579640 UBE2D1P51668 147 aa7.26□□□□□ -1.25
SS18-213ENST00000579640 AKR1D1P51857 326 aa7.26□□□□□ -1.25
SS18-213ENST00000579640 SEC11AP67812 179 aa7.26□□□□□ -1.25
SS18-213ENST00000579640 MIAQ16674 131 aa7.26□□□□□ -1.25
SS18-213ENST00000579640 ZC2HC1BQ5TFG8 222 aa7.26□□□□□ -1.25
SS18-213ENST00000579640 CHTOPQ9Y3Y2 248 aaKnown RBP7.26□□□□□ -1.25
SS18-213ENST00000579640 TENM2Q9NT68 2774 aa7.25□□□□□ -1.25
SS18-213ENST00000579640 TRAV8-3A0A0A6YYJ7 113 aa7.25□□□□□ -1.25
SS18-213ENST00000579640 TRAV13-1A0A0B4J241 112 aa7.25□□□□□ -1.25
SS18-213ENST00000579640 TRAV8-4A0A0B4J246 113 aa7.25□□□□□ -1.25
SS18-213ENST00000579640 F8VRH5 84 aa7.25□□□□□ -1.25
SS18-213ENST00000579640 ODF1Q14990 250 aa7.25□□□□□ -1.25
SS18-213ENST00000579640 SS18Q15532 418 aa7.25□□□□□ -1.25
SS18-213ENST00000579640 LINC01545Q5VT33 79 aa7.25□□□□□ -1.25
SS18-213ENST00000579640 FAM19A3Q7Z5A8 133 aa7.25□□□□□ -1.25
SS18-213ENST00000579640 UBE2WQ96B02 151 aa7.25□□□□□ -1.25
SS18-213ENST00000579640 IGKV3OR2-268A0A0C4DH90 116 aa7.24□□□□□ -1.25
SS18-213ENST00000579640 LINC00959A0A1B0GUT2 108 aa7.24□□□□□ -1.25
SS18-213ENST00000579640 LY6G6CO95867 125 aa7.24□□□□□ -1.25
SS18-213ENST00000579640 CLPSL2Q6UWE3 100 aa7.24□□□□□ -1.25
SS18-213ENST00000579640 ENHOQ6UWT2 76 aa7.24□□□□□ -1.25
SS18-213ENST00000579640 NBDYA0A0U1RRE5 68 aa7.24□□□□□ -1.25
SS18-213ENST00000579640 MRPL35Q9NZE8 188 aaKnown RBP7.24□□□□□ -1.25
SS18-213ENST00000579640 TINCRA0A1B0GVN0 87 aa7.23□□□□□ -1.25
SS18-213ENST00000579640 IGLC3P0DOY3 106 aa7.23□□□□□ -1.25
SS18-213ENST00000579640 HERVK_113P63121 156 aa7.23□□□□□ -1.25
SS18-213ENST00000579640 RMI2Q96E14 147 aa7.23□□□□□ -1.25
SS18-213ENST00000579640 ALMS1Q8TCU4 4167 aa7.22□□□□□ -1.25
SS18-213ENST00000579640 IGLV4-69A0A075B6H9 119 aa7.22□□□□□ -1.25
SS18-213ENST00000579640 A0A0J9YXV3 536 aa7.22□□□□□ -1.25
SS18-213ENST00000579640 DPM2O94777 84 aa7.22□□□□□ -1.25
SS18-213ENST00000579640 PLNP26678 52 aa7.22□□□□□ -1.25
SS18-213ENST00000579640 LINC00242Q5T6M2 205 aa7.22□□□□□ -1.25
SS18-213ENST00000579640 NFE4Q86UQ8 179 aa7.22□□□□□ -1.25
SS18-213ENST00000579640 GEMIN7Q9H840 131 aaKnown RBP7.22□□□□□ -1.25
SS18-213ENST00000579640 LOC105371267A0A1B0GV96 52 aa7.22□□□□□ -1.25
SS18-213ENST00000579640 JOSD1Q15040 202 aaPredicted RBP7.22□□□□□ -1.25
SS18-213ENST00000579640 CHCHD10Q8WYQ3 142 aaPredicted RBP7.22□□□□□ -1.25
SS18-213ENST00000579640 CHAC1Q9BUX1 264 aa7.22□□□□□ -1.25
SS18-213ENST00000579640 C1orf43Q9BWL3 253 aa7.22□□□□□ -1.25
SS18-213ENST00000579640 VPS13DQ5THJ4 4388 aa7.22□□□□□ -1.25
SS18-213ENST00000579640 SCGB1D1O95968 90 aa7.21□□□□□ -1.26
SS18-213ENST00000579640 IGKCP01834 107 aa7.21□□□□□ -1.26
SS18-213ENST00000579640 CD164L2Q6UWJ8 174 aa7.21□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 125.5 ms