RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 CST9LQ9H4G1 147 aa9.43□□□□□ -0.9
CCDC40-209ENST00000573474 TRAV8-6A0A0B4J262 113 aa9.42□□□□□ -0.9
CCDC40-209ENST00000573474 TMEM262E9PQX1 116 aa9.42□□□□□ -0.9
CCDC40-209ENST00000573474 PKIAP61925 76 aa9.42□□□□□ -0.9
CCDC40-209ENST00000573474 ODF1Q14990 250 aa9.42□□□□□ -0.9
CCDC40-209ENST00000573474 AMELXQ99217 191 aa9.42□□□□□ -0.9
CCDC40-209ENST00000573474 A0A1B0GUV1 79 aa9.41□□□□□ -0.9
CCDC40-209ENST00000573474 ESRGQ1W209 222 aa9.41□□□□□ -0.9
CCDC40-209ENST00000573474 TEX43Q6ZNM6 134 aa9.41□□□□□ -0.9
CCDC40-209ENST00000573474 Q6ZUT4 128 aa9.41□□□□□ -0.9
CCDC40-209ENST00000573474 ZNF664Q8N3J9 261 aa9.41□□□□□ -0.9
CCDC40-209ENST00000573474 CDC42SE2Q9NRR3 84 aa9.41□□□□□ -0.9
CCDC40-209ENST00000573474 CHTOPQ9Y3Y2 248 aaKnown RBP9.41□□□□□ -0.9
CCDC40-209ENST00000573474 FBN3Q75N90 2809 aa9.4□□□□□ -0.9
CCDC40-209ENST00000573474 ZC2HC1BQ5TFG8 222 aa9.4□□□□□ -0.9
CCDC40-209ENST00000573474 LINC00518Q8N0U6 118 aa9.4□□□□□ -0.9
CCDC40-209ENST00000573474 PMCHL2Q9BQD1 86 aa9.4□□□□□ -0.9
CCDC40-209ENST00000573474 NUPR2A6NF83 97 aa9.39□□□□□ -0.91
CCDC40-209ENST00000573474 F8VRH5 84 aa9.39□□□□□ -0.91
CCDC40-209ENST00000573474 RBX1P62877 108 aa9.39□□□□□ -0.91
CCDC40-209ENST00000573474 RNASE13Q5GAN3 156 aaKnown RBP9.39□□□□□ -0.91
CCDC40-209ENST00000573474 C12orf57Q99622 126 aa9.39□□□□□ -0.91
CCDC40-209ENST00000573474 C2orf88Q9BSF0 95 aa9.39□□□□□ -0.91
CCDC40-209ENST00000573474 MRPL35Q9NZE8 188 aaKnown RBP9.39□□□□□ -0.91
CCDC40-209ENST00000573474 KLK5Q9Y337 293 aaPredicted RBP9.39□□□□□ -0.91
CCDC40-209ENST00000573474 IGLV4-60A0A075B6I1 120 aa9.38□□□□□ -0.91
CCDC40-209ENST00000573474 DPM2O94777 84 aa9.38□□□□□ -0.91
CCDC40-209ENST00000573474 DYNC2H1Q8NCM8 4307 aaKnown RBP9.37□□□□□ -0.91
CCDC40-209ENST00000573474 IGKCP01834 107 aa9.37□□□□□ -0.91
CCDC40-209ENST00000573474 PLNP26678 52 aa9.37□□□□□ -0.91
CCDC40-209ENST00000573474 CCL18P55774 89 aa9.37□□□□□ -0.91
CCDC40-209ENST00000573474 MPV17L2Q567V2 206 aa9.37□□□□□ -0.91
CCDC40-209ENST00000573474 CDPF1Q6NVV7 123 aa9.37□□□□□ -0.91
CCDC40-209ENST00000573474 ATOH7Q8N100 152 aa9.37□□□□□ -0.91
CCDC40-209ENST00000573474 TCTAP57738 103 aa9.36□□□□□ -0.91
CCDC40-209ENST00000573474 S100A12P80511 92 aa9.36□□□□□ -0.91
CCDC40-209ENST00000573474 APLNQ9ULZ1 77 aa9.36□□□□□ -0.91
CCDC40-209ENST00000573474 IGLV4-69A0A075B6H9 119 aa9.35□□□□□ -0.91
CCDC40-209ENST00000573474 TRAV9-2A0A087WT02 112 aa9.35□□□□□ -0.91
CCDC40-209ENST00000573474 UBE2D1P51668 147 aa9.35□□□□□ -0.91
CCDC40-209ENST00000573474 MRPS16Q9Y3D3 137 aaKnown RBP9.35□□□□□ -0.91
CCDC40-209ENST00000573474 LINC00588Q9Y4M8 146 aa9.35□□□□□ -0.91
CCDC40-209ENST00000573474 A0A0J9YXV3 536 aa9.34□□□□□ -0.91
CCDC40-209ENST00000573474 IGLC3P0DOY3 106 aa9.34□□□□□ -0.91
CCDC40-209ENST00000573474 NFE4Q86UQ8 179 aa9.34□□□□□ -0.91
CCDC40-209ENST00000573474 WFDC10BQ8IUB3 73 aa9.34□□□□□ -0.91
CCDC40-209ENST00000573474 VAMP8Q9BV40 100 aa9.34□□□□□ -0.91
CCDC40-209ENST00000573474 DNAH7Q8WXX0 4024 aa9.34□□□□□ -0.91
CCDC40-209ENST00000573474 TRAV13-1A0A0B4J241 112 aa9.33□□□□□ -0.92
CCDC40-209ENST00000573474 TINCRA0A1B0GVN0 87 aa9.33□□□□□ -0.92
CCDC40-209ENST00000573474 C11orf86A6NJI1 115 aa9.33□□□□□ -0.92
CCDC40-209ENST00000573474 HSBP1L1C9JCN9 74 aa9.33□□□□□ -0.92
CCDC40-209ENST00000573474 ANGP03950 147 aaKnown RBP9.33□□□□□ -0.92
CCDC40-209ENST00000573474 FAM19A3Q7Z5A8 133 aa9.33□□□□□ -0.92
CCDC40-209ENST00000573474 IGHV3-30P01768 117 aa9.32□□□□□ -0.92
CCDC40-209ENST00000573474 IGHV3-33P01772 117 aa9.32□□□□□ -0.92
CCDC40-209ENST00000573474 IGHV3-30-3P0DP02 117 aa9.32□□□□□ -0.92
CCDC40-209ENST00000573474 IGHV3-30-5P0DP03 117 aa9.32□□□□□ -0.92
CCDC40-209ENST00000573474 SEC11AP67812 179 aa9.32□□□□□ -0.92
CCDC40-209ENST00000573474 LINC01556Q5JQF7 62 aa9.32□□□□□ -0.92
CCDC40-209ENST00000573474 LINC00269Q8N2A0 174 aa9.32□□□□□ -0.92
CCDC40-209ENST00000573474 Q8N3U1 123 aa9.32□□□□□ -0.92
CCDC40-209ENST00000573474 UPK3BQ9BT76 320 aa9.32□□□□□ -0.92
CCDC40-209ENST00000573474 CHAC1Q9BUX1 264 aa9.32□□□□□ -0.92
CCDC40-209ENST00000573474 IGKV3OR2-268A0A0C4DH90 116 aa9.31□□□□□ -0.92
CCDC40-209ENST00000573474 hDV102S1A0JD36 115 aa9.31□□□□□ -0.92
CCDC40-209ENST00000573474 CCL25O15444 150 aa9.31□□□□□ -0.92
CCDC40-209ENST00000573474 MAJINQ3KP22 176 aa9.31□□□□□ -0.92
CCDC40-209ENST00000573474 MUC7Q8TAX7 377 aa9.31□□□□□ -0.92
CCDC40-209ENST00000573474 WWC2-AS2Q96NR7 200 aa9.31□□□□□ -0.92
CCDC40-209ENST00000573474 GEMIN7Q9H840 131 aaKnown RBP9.31□□□□□ -0.92
CCDC40-209ENST00000573474 PAM16Q9Y3D7 125 aa9.31□□□□□ -0.92
CCDC40-209ENST00000573474 LINC00959A0A1B0GUT2 108 aa9.3□□□□□ -0.92
CCDC40-209ENST00000573474 SIVA1O15304 175 aa9.3□□□□□ -0.92
CCDC40-209ENST00000573474 DNAH10OSP0CZ25 163 aa9.3□□□□□ -0.92
CCDC40-209ENST00000573474 HERVK_113P63121 156 aa9.3□□□□□ -0.92
CCDC40-209ENST00000573474 REG3AQ06141 175 aa9.3□□□□□ -0.92
CCDC40-209ENST00000573474 SPATA45Q537H7 98 aa9.3□□□□□ -0.92
CCDC40-209ENST00000573474 LINC00242Q5T6M2 205 aa9.3□□□□□ -0.92
CCDC40-209ENST00000573474 ZFAND6Q6FIF0 208 aa9.3□□□□□ -0.92
CCDC40-209ENST00000573474 STPG4Q8N801 248 aa9.3□□□□□ -0.92
CCDC40-209ENST00000573474 KLK12Q9UKR0 248 aa9.3□□□□□ -0.92
CCDC40-209ENST00000573474 SS18Q15532 418 aa9.29□□□□□ -0.92
CCDC40-209ENST00000573474 TMEM170BQ5T4T1 132 aa9.29□□□□□ -0.92
CCDC40-209ENST00000573474 PRR34Q9NV39 138 aa9.29□□□□□ -0.92
CCDC40-209ENST00000573474 IGLV5-45A0A087WSX0 123 aa9.28□□□□□ -0.92
CCDC40-209ENST00000573474 ZNF22P17026 224 aaPredicted RBP9.28□□□□□ -0.92
CCDC40-209ENST00000573474 COX6A2Q02221 97 aa9.28□□□□□ -0.92
CCDC40-209ENST00000573474 CLPSL2Q6UWE3 100 aa9.28□□□□□ -0.92
CCDC40-209ENST00000573474 UBE2DNLQ8IWF7 75 aa9.28□□□□□ -0.92
CCDC40-209ENST00000573474 LINC00469Q8N7U9 141 aa9.28□□□□□ -0.92
CCDC40-209ENST00000573474 HERVK_113P61574 105 aa9.27□□□□□ -0.93
CCDC40-209ENST00000573474 ANKRD39Q53RE8 183 aa9.27□□□□□ -0.93
CCDC40-209ENST00000573474 TMEM223A0PJW6 202 aa9.26□□□□□ -0.93
CCDC40-209ENST00000573474 H3BRM9 83 aa9.26□□□□□ -0.93
CCDC40-209ENST00000573474 CRPP02741 224 aa9.26□□□□□ -0.93
CCDC40-209ENST00000573474 ENHOQ6UWT2 76 aa9.26□□□□□ -0.93
CCDC40-209ENST00000573474 Q9H8V8 135 aa9.26□□□□□ -0.93
CCDC40-209ENST00000573474 CDKN2A-AS1Q9UH64 79 aa9.26□□□□□ -0.93
CCDC40-209ENST00000573474 UBE2WQ96B02 151 aa9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 96.2 ms