RNA–Protein interactions for RNA: ENST00000571409.1

CTDNEP1-206, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

TSL 5

Gene CTDNEP1, Length 741 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-206ENST00000571409 PPP1R17O96001 155 aa19.42■□□□□ 0.7
CTDNEP1-206ENST00000571409 HIGD2BQ4VC39 106 aa19.42■□□□□ 0.7
CTDNEP1-206ENST00000571409 J3QL48 77 aa19.41■□□□□ 0.7
CTDNEP1-206ENST00000571409 VCYO14598 125 aa19.41■□□□□ 0.7
CTDNEP1-206ENST00000571409 CAMPP49913 170 aa19.41■□□□□ 0.7
CTDNEP1-206ENST00000571409 SUMO2P61956 95 aaKnown RBP19.41■□□□□ 0.7
CTDNEP1-206ENST00000571409 FOXI1Q12951 378 aa19.41■□□□□ 0.7
CTDNEP1-206ENST00000571409 FAM104BQ5XKR9 115 aa19.41■□□□□ 0.7
CTDNEP1-206ENST00000571409 MRPL52Q86TS9 123 aaKnown RBP19.41■□□□□ 0.7
CTDNEP1-206ENST00000571409 FCER1GP30273 86 aa19.4■□□□□ 0.7
CTDNEP1-206ENST00000571409 MRPL51Q4U2R6 128 aaKnown RBP19.4■□□□□ 0.7
CTDNEP1-206ENST00000571409 LINC00959A0A1B0GUT2 108 aa19.39■□□□□ 0.69
CTDNEP1-206ENST00000571409 XCL1P47992 114 aa19.39■□□□□ 0.69
CTDNEP1-206ENST00000571409 CIRBPQ14011 172 aaKnown RBP19.39■□□□□ 0.69
CTDNEP1-206ENST00000571409 CCL25O15444 150 aa19.38■□□□□ 0.69
CTDNEP1-206ENST00000571409 RPL37AP61513 92 aaKnown RBP19.38■□□□□ 0.69
CTDNEP1-206ENST00000571409 CDC42SE2Q9NRR3 84 aa19.38■□□□□ 0.69
CTDNEP1-206ENST00000571409 A0A1B0GW15 77 aa19.37■□□□□ 0.69
CTDNEP1-206ENST00000571409 KIR2DL4Q99706 377 aa19.37■□□□□ 0.69
CTDNEP1-206ENST00000571409 GVQW2A0A096LPI5 108 aaPredicted RBP19.36■□□□□ 0.69
CTDNEP1-206ENST00000571409 KRTAP29-1A8MX34 341 aaPredicted RBP19.36■□□□□ 0.69
CTDNEP1-206ENST00000571409 PPP1R2P9O14990 202 aa19.36■□□□□ 0.69
CTDNEP1-206ENST00000571409 ZNF664Q8N3J9 261 aa19.36■□□□□ 0.69
CTDNEP1-206ENST00000571409 CHTF8P0CG12 524 aa19.35■□□□□ 0.69
CTDNEP1-206ENST00000571409 LINC00862A6NCI5 91 aa19.34■□□□□ 0.69
CTDNEP1-206ENST00000571409 SS18Q15532 418 aa19.34■□□□□ 0.69
CTDNEP1-206ENST00000571409 DPH3Q96FX2 82 aa19.34■□□□□ 0.69
CTDNEP1-206ENST00000571409 MRPL54Q6P161 138 aaKnown RBP19.33■□□□□ 0.68
CTDNEP1-206ENST00000571409 CKS2P33552 79 aa19.32■□□□□ 0.68
CTDNEP1-206ENST00000571409 HBBP68871 147 aa19.32■□□□□ 0.68
CTDNEP1-206ENST00000571409 SPACA4Q8TDM5 124 aa19.32■□□□□ 0.68
CTDNEP1-206ENST00000571409 UBE2D4Q9Y2X8 147 aa19.31■□□□□ 0.68
CTDNEP1-206ENST00000571409 S100A8P05109 93 aa19.3■□□□□ 0.68
CTDNEP1-206ENST00000571409 COX6A2Q02221 97 aa19.3■□□□□ 0.68
CTDNEP1-206ENST00000571409 SMAGPQ0VAQ4 97 aa19.3■□□□□ 0.68
CTDNEP1-206ENST00000571409 C20orf78Q9BR46 151 aa19.3■□□□□ 0.68
CTDNEP1-206ENST00000571409 CSDC2Q9Y534 153 aaKnown RBP19.3■□□□□ 0.68
CTDNEP1-206ENST00000571409 TRBV24-1A0A075B6N3 115 aa19.29■□□□□ 0.68
CTDNEP1-206ENST00000571409 A0A087WYN8 130 aa19.29■□□□□ 0.68
CTDNEP1-206ENST00000571409 IGHV1-58A0A0C4DH39 117 aa19.29■□□□□ 0.68
CTDNEP1-206ENST00000571409 A0A1B0GXF2 115 aa19.29■□□□□ 0.68
CTDNEP1-206ENST00000571409 CD164L2Q6UWJ8 174 aa19.29■□□□□ 0.68
CTDNEP1-206ENST00000571409 F8W036 122 aa19.28■□□□□ 0.68
CTDNEP1-206ENST00000571409 TNFRSF6BO95407 300 aa19.27■□□□□ 0.68
CTDNEP1-206ENST00000571409 PRSS3P2Q8NHM4 247 aa19.27■□□□□ 0.68
CTDNEP1-206ENST00000571409 D6R8Y8 96 aa19.26■□□□□ 0.67
CTDNEP1-206ENST00000571409 RPL32P62910 135 aaKnown RBP19.26■□□□□ 0.67
CTDNEP1-206ENST00000571409 RNASE13Q5GAN3 156 aaKnown RBP19.26■□□□□ 0.67
CTDNEP1-206ENST00000571409 TMEM18Q96B42 140 aa19.26■□□□□ 0.67
CTDNEP1-206ENST00000571409 LINC00526Q96FQ7 95 aa19.25■□□□□ 0.67
CTDNEP1-206ENST00000571409 C1orf196B1AJZ1 125 aa19.24■□□□□ 0.67
CTDNEP1-206ENST00000571409 HNRNPA3P51991 378 aaKnown RBP19.24■□□□□ 0.67
CTDNEP1-206ENST00000571409 SMIM2Q9BVW6 85 aa19.24■□□□□ 0.67
CTDNEP1-206ENST00000571409 IGKV2-24A0A0C4DH68 120 aa19.23■□□□□ 0.67
CTDNEP1-206ENST00000571409 Q6ZUT4 128 aa19.23■□□□□ 0.67
CTDNEP1-206ENST00000571409 PLAC8Q9NZF1 115 aa19.23■□□□□ 0.67
CTDNEP1-206ENST00000571409 TCAPO15273 167 aa19.22■□□□□ 0.67
CTDNEP1-206ENST00000571409 TIMM21Q9BVV7 248 aa19.22■□□□□ 0.67
CTDNEP1-206ENST00000571409 NPYP01303 97 aa19.21■□□□□ 0.67
CTDNEP1-206ENST00000571409 RAB14P61106 215 aa19.21■□□□□ 0.67
CTDNEP1-206ENST00000571409 MAJINQ3KP22 176 aa19.21■□□□□ 0.67
CTDNEP1-206ENST00000571409 TRAV13-1A0A0B4J241 112 aa19.2■□□□□ 0.66
CTDNEP1-206ENST00000571409 ZNF561-AS1K7EIQ3 104 aa19.2■□□□□ 0.66
CTDNEP1-206ENST00000571409 OXTP01178 125 aa19.2■□□□□ 0.66
CTDNEP1-206ENST00000571409 PPBPP02775 128 aa19.2■□□□□ 0.66
CTDNEP1-206ENST00000571409 ATP5L2Q7Z4Y8 100 aa19.2■□□□□ 0.66
CTDNEP1-206ENST00000571409 CARD19Q96LW7 228 aa19.2■□□□□ 0.66
CTDNEP1-206ENST00000571409 RPL39P62891 51 aaKnown RBP19.19■□□□□ 0.66
CTDNEP1-206ENST00000571409 LRP1Q07954 4544 aaKnown RBP19.18■□□□□ 0.66
CTDNEP1-206ENST00000571409 A0A096LNI7 61 aa19.18■□□□□ 0.66
CTDNEP1-206ENST00000571409 PHOX2AO14813 284 aa19.18■□□□□ 0.66
CTDNEP1-206ENST00000571409 MALP21145 153 aa19.18■□□□□ 0.66
CTDNEP1-206ENST00000571409 PKHD1L1Q86WI1 4243 aa19.18■□□□□ 0.66
CTDNEP1-206ENST00000571409 COX7A2LO14548 114 aa19.17■□□□□ 0.66
CTDNEP1-206ENST00000571409 PNRC1Q12796 327 aaPredicted RBP19.17■□□□□ 0.66
CTDNEP1-206ENST00000571409 ORMDL3Q8N138 153 aa19.16■□□□□ 0.66
CTDNEP1-206ENST00000571409 SYCNQ0VAF6 134 aa19.15■□□□□ 0.66
CTDNEP1-206ENST00000571409 STPG4Q8N801 248 aa19.15■□□□□ 0.66
CTDNEP1-206ENST00000571409 PKIGQ9Y2B9 76 aa19.15■□□□□ 0.66
CTDNEP1-206ENST00000571409 TMEM136Q6ZRR5 245 aa19.14■□□□□ 0.65
CTDNEP1-206ENST00000571409 ANAPC16Q96DE5 110 aa19.14■□□□□ 0.65
CTDNEP1-206ENST00000571409 C7orf33Q8WU49 177 aa19.13■□□□□ 0.65
CTDNEP1-206ENST00000571409 PRELID3AQ96N28 172 aa19.13■□□□□ 0.65
CTDNEP1-206ENST00000571409 SPANXA1Q9NS26 97 aa19.13■□□□□ 0.65
CTDNEP1-206ENST00000571409 FAT3Q8TDW7 4589 aa19.13■□□□□ 0.65
CTDNEP1-206ENST00000571409 IGLV4-69A0A075B6H9 119 aa19.12■□□□□ 0.65
CTDNEP1-206ENST00000571409 MT-ND4LP03901 98 aa19.12■□□□□ 0.65
CTDNEP1-206ENST00000571409 C5orf38Q86SI9 138 aa19.12■□□□□ 0.65
CTDNEP1-206ENST00000571409 FAM104AQ969W3 186 aa19.11■□□□□ 0.65
CTDNEP1-206ENST00000571409 LINC00474Q9P2X8 69 aa19.11■□□□□ 0.65
CTDNEP1-206ENST00000571409 OPRPNQ99935 248 aaPredicted RBP19.1■□□□□ 0.65
CTDNEP1-206ENST00000571409 RAB5AP20339 215 aa19.08■□□□□ 0.64
CTDNEP1-206ENST00000571409 MRPS36P82909 103 aaKnown RBP19.08■□□□□ 0.64
CTDNEP1-206ENST00000571409 Q6ZRU5 148 aa19.08■□□□□ 0.64
CTDNEP1-206ENST00000571409 APOMO95445 188 aa19.07■□□□□ 0.64
CTDNEP1-206ENST00000571409 CLLU1Q5K131 121 aa19.07■□□□□ 0.64
CTDNEP1-206ENST00000571409 CAMK2N2Q96S95 79 aa19.06■□□□□ 0.64
CTDNEP1-206ENST00000571409 C2orf48Q96LS8 159 aa19.04■□□□□ 0.64
CTDNEP1-206ENST00000571409 LAMTOR2Q9Y2Q5 125 aa19.04■□□□□ 0.64
CTDNEP1-206ENST00000571409 LOC389332A0A1B0GUA5 103 aa19.03■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms