RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 CLRN3Q8NCR9 226 aa9.73□□□□□ -0.85
VPS39-210ENST00000568357 CHCHD10Q8WYQ3 142 aaPredicted RBP9.73□□□□□ -0.85
VPS39-210ENST00000568357 ANAPC16Q96DE5 110 aa9.73□□□□□ -0.85
VPS39-210ENST00000568357 TMEM101Q96IK0 257 aa9.73□□□□□ -0.85
VPS39-210ENST00000568357 BTF3L4Q96K17 158 aa9.73□□□□□ -0.85
VPS39-210ENST00000568357 C20orf78Q9BR46 151 aa9.73□□□□□ -0.85
VPS39-210ENST00000568357 D6R8Y8 96 aa9.72□□□□□ -0.85
VPS39-210ENST00000568357 FCER1GP30273 86 aa9.72□□□□□ -0.85
VPS39-210ENST00000568357 ATP5L2Q7Z4Y8 100 aa9.72□□□□□ -0.85
VPS39-210ENST00000568357 MRPL52Q86TS9 123 aaKnown RBP9.72□□□□□ -0.85
VPS39-210ENST00000568357 OR5A1Q8NGJ0 315 aa9.72□□□□□ -0.85
VPS39-210ENST00000568357 CDC42SE2Q9NRR3 84 aa9.72□□□□□ -0.85
VPS39-210ENST00000568357 hDV102S1A0JD36 115 aa9.71□□□□□ -0.86
VPS39-210ENST00000568357 SLPIP03973 132 aa9.71□□□□□ -0.86
VPS39-210ENST00000568357 ADCYAP1P18509 176 aa9.71□□□□□ -0.86
VPS39-210ENST00000568357 RPL32P62910 135 aaKnown RBP9.71□□□□□ -0.86
VPS39-210ENST00000568357 SCXQ7RTU7 201 aa9.71□□□□□ -0.86
VPS39-210ENST00000568357 C9orf163Q8N9P6 203 aa9.71□□□□□ -0.86
VPS39-210ENST00000568357 KIR2DL4Q99706 377 aa9.71□□□□□ -0.86
VPS39-210ENST00000568357 LINC00959A0A1B0GUT2 108 aa9.7□□□□□ -0.86
VPS39-210ENST00000568357 TMEM218A2RU14 115 aa9.7□□□□□ -0.86
VPS39-210ENST00000568357 NPYP01303 97 aa9.7□□□□□ -0.86
VPS39-210ENST00000568357 UQCC3Q6UW78 93 aa9.7□□□□□ -0.86
VPS39-210ENST00000568357 ZNF664Q8N3J9 261 aa9.7□□□□□ -0.86
VPS39-210ENST00000568357 C15orf56Q8N910 161 aa9.7□□□□□ -0.86
VPS39-210ENST00000568357 CHAC1Q9BUX1 264 aa9.7□□□□□ -0.86
VPS39-210ENST00000568357 FAM229AH3BQW9 127 aa9.69□□□□□ -0.86
VPS39-210ENST00000568357 PPBPP02775 128 aa9.69□□□□□ -0.86
VPS39-210ENST00000568357 CNBPP62633 177 aaKnown RBP9.69□□□□□ -0.86
VPS39-210ENST00000568357 FOXI1Q12951 378 aa9.69□□□□□ -0.86
VPS39-210ENST00000568357 UBE2D4Q9Y2X8 147 aa9.69□□□□□ -0.86
VPS39-210ENST00000568357 XCL1P47992 114 aa9.68□□□□□ -0.86
VPS39-210ENST00000568357 SDIM1Q6ZPB5 146 aa9.68□□□□□ -0.86
VPS39-210ENST00000568357 TMEM136Q6ZRR5 245 aa9.68□□□□□ -0.86
VPS39-210ENST00000568357 CIRBP-AS1Q8TBR5 109 aa9.68□□□□□ -0.86
VPS39-210ENST00000568357 SMIM2Q9BVW6 85 aa9.68□□□□□ -0.86
VPS39-210ENST00000568357 CSDC2Q9Y534 153 aaKnown RBP9.68□□□□□ -0.86
VPS39-210ENST00000568357 J3QL48 77 aa9.67□□□□□ -0.86
VPS39-210ENST00000568357 PHOX2AO14813 284 aa9.67□□□□□ -0.86
VPS39-210ENST00000568357 CCL25O15444 150 aa9.67□□□□□ -0.86
VPS39-210ENST00000568357 CFAP161Q6P656 301 aa9.67□□□□□ -0.86
VPS39-210ENST00000568357 ORMDL3Q8N138 153 aa9.67□□□□□ -0.86
VPS39-210ENST00000568357 TCAPO15273 167 aa9.66□□□□□ -0.86
VPS39-210ENST00000568357 SS18Q15532 418 aa9.66□□□□□ -0.86
VPS39-210ENST00000568357 HIGD2BQ4VC39 106 aa9.66□□□□□ -0.86
VPS39-210ENST00000568357 RNASE13Q5GAN3 156 aaKnown RBP9.66□□□□□ -0.86
VPS39-210ENST00000568357 PRELID3AQ96N28 172 aa9.66□□□□□ -0.86
VPS39-210ENST00000568357 AP5S1Q9NUS5 200 aa9.66□□□□□ -0.86
VPS39-210ENST00000568357 PANO1I0J062 215 aa9.65□□□□□ -0.86
VPS39-210ENST00000568357 RPL39P62891 51 aaKnown RBP9.65□□□□□ -0.86
VPS39-210ENST00000568357 COMMD7Q86VX2 200 aa9.65□□□□□ -0.86
VPS39-210ENST00000568357 LINC00528Q8N1L1 170 aa9.65□□□□□ -0.86
VPS39-210ENST00000568357 FAM104AQ969W3 186 aa9.65□□□□□ -0.86
VPS39-210ENST00000568357 TIMM21Q9BVV7 248 aa9.65□□□□□ -0.86
VPS39-210ENST00000568357 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.65□□□□□ -0.86
VPS39-210ENST00000568357 SMAGPQ0VAQ4 97 aa9.64□□□□□ -0.87
VPS39-210ENST00000568357 CD164L2Q6UWJ8 174 aa9.64□□□□□ -0.87
VPS39-210ENST00000568357 TMEM18Q96B42 140 aa9.64□□□□□ -0.87
VPS39-210ENST00000568357 IMMP2LQ96T52 175 aa9.64□□□□□ -0.87
VPS39-210ENST00000568357 SEC11CQ9BY50 192 aa9.64□□□□□ -0.87
VPS39-210ENST00000568357 SRRM2Q9UQ35 2752 aaKnown RBP9.64□□□□□ -0.87
VPS39-210ENST00000568357 GVQW2A0A096LPI5 108 aaPredicted RBP9.63□□□□□ -0.87
VPS39-210ENST00000568357 PRSS47A8MTI9 375 aa9.63□□□□□ -0.87
VPS39-210ENST00000568357 Q6ZUT4 128 aa9.63□□□□□ -0.87
VPS39-210ENST00000568357 OPRPNQ99935 248 aaPredicted RBP9.63□□□□□ -0.87
VPS39-210ENST00000568357 CTDSP1Q9GZU7 261 aa9.63□□□□□ -0.87
VPS39-210ENST00000568357 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.62□□□□□ -0.87
VPS39-210ENST00000568357 TRAV13-1A0A0B4J241 112 aa9.62□□□□□ -0.87
VPS39-210ENST00000568357 LOC389332A0A1B0GUA5 103 aa9.62□□□□□ -0.87
VPS39-210ENST00000568357 C1orf196B1AJZ1 125 aa9.62□□□□□ -0.87
VPS39-210ENST00000568357 IGHV3-64A0A075B6Q5 118 aa9.61□□□□□ -0.87
VPS39-210ENST00000568357 RAB5AP20339 215 aa9.61□□□□□ -0.87
VPS39-210ENST00000568357 LINC00526Q96FQ7 95 aa9.61□□□□□ -0.87
VPS39-210ENST00000568357 LAMTOR2Q9Y2Q5 125 aa9.61□□□□□ -0.87
VPS39-210ENST00000568357 IGHV1-58A0A0C4DH39 117 aa9.6□□□□□ -0.87
VPS39-210ENST00000568357 PLA2G1BP04054 148 aaKnown RBP9.6□□□□□ -0.87
VPS39-210ENST00000568357 C10orf91Q5T1B1 145 aa9.6□□□□□ -0.87
VPS39-210ENST00000568357 SPANXA1Q9NS26 97 aa9.6□□□□□ -0.87
VPS39-210ENST00000568357 CIRBPQ14011 172 aaKnown RBP9.59□□□□□ -0.87
VPS39-210ENST00000568357 MAP1LC3AQ9H492 121 aa9.59□□□□□ -0.87
VPS39-210ENST00000568357 CHTF8P0CG12 524 aa9.58□□□□□ -0.88
VPS39-210ENST00000568357 KRTAP10-4P60372 401 aaPredicted RBP9.58□□□□□ -0.88
VPS39-210ENST00000568357 MRPS36P82909 103 aaKnown RBP9.58□□□□□ -0.88
VPS39-210ENST00000568357 COX6A2Q02221 97 aa9.58□□□□□ -0.88
VPS39-210ENST00000568357 Q8N8P6 123 aa9.58□□□□□ -0.88
VPS39-210ENST00000568357 TRAV9-1A0A075B6T8 112 aa9.57□□□□□ -0.88
VPS39-210ENST00000568357 COX7A2LO14548 114 aa9.57□□□□□ -0.88
VPS39-210ENST00000568357 KIAA1644Q3SXP7 199 aa9.57□□□□□ -0.88
VPS39-210ENST00000568357 C5orf38Q86SI9 138 aa9.57□□□□□ -0.88
VPS39-210ENST00000568357 PRSS3P2Q8NHM4 247 aa9.57□□□□□ -0.88
VPS39-210ENST00000568357 DPH3Q96FX2 82 aa9.57□□□□□ -0.88
VPS39-210ENST00000568357 CARHSP1Q9Y2V2 147 aaKnown RBP9.57□□□□□ -0.88
VPS39-210ENST00000568357 MALP21145 153 aa9.56□□□□□ -0.88
VPS39-210ENST00000568357 PYGO1Q9Y3Y4 419 aa9.56□□□□□ -0.88
VPS39-210ENST00000568357 ZNF561-AS1K7EIQ3 104 aa9.55□□□□□ -0.88
VPS39-210ENST00000568357 SPACA4Q8TDM5 124 aa9.55□□□□□ -0.88
VPS39-210ENST00000568357 IGLV4-69A0A075B6H9 119 aa9.54□□□□□ -0.88
VPS39-210ENST00000568357 IGLV4-3A0A075B6K6 122 aa9.54□□□□□ -0.88
VPS39-210ENST00000568357 A0A087WYN8 130 aa9.54□□□□□ -0.88
VPS39-210ENST00000568357 IGHV3OR16-9A0A0B4J2B5 98 aa9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 72.4 ms