RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 SLC7A5P1Q8MH63 180 aa10.15□□□□□ -0.78
CLN3-229ENST00000567963 UBR4Q5T4S7 5183 aa10.14□□□□□ -0.79
CLN3-229ENST00000567963 ZNF727A8MUV8 499 aa10.14□□□□□ -0.79
CLN3-229ENST00000567963 PHOX2AO14813 284 aa10.14□□□□□ -0.79
CLN3-229ENST00000567963 ESDP10768 282 aa10.14□□□□□ -0.79
CLN3-229ENST00000567963 BORCS7Q96B45 105 aa10.14□□□□□ -0.79
CLN3-229ENST00000567963 TMEM101Q96IK0 257 aa10.14□□□□□ -0.79
CLN3-229ENST00000567963 BTF3L4Q96K17 158 aa10.14□□□□□ -0.79
CLN3-229ENST00000567963 ST20Q9HBF5 79 aa10.14□□□□□ -0.79
CLN3-229ENST00000567963 LINC00959A0A1B0GUT2 108 aa10.13□□□□□ -0.79
CLN3-229ENST00000567963 HIGD1CA8MV81 97 aa10.13□□□□□ -0.79
CLN3-229ENST00000567963 TSHBP01222 138 aa10.13□□□□□ -0.79
CLN3-229ENST00000567963 XCL1P47992 114 aa10.13□□□□□ -0.79
CLN3-229ENST00000567963 MAJINQ3KP22 176 aa10.13□□□□□ -0.79
CLN3-229ENST00000567963 C10orf91Q5T1B1 145 aa10.13□□□□□ -0.79
CLN3-229ENST00000567963 C7orf33Q8WU49 177 aa10.13□□□□□ -0.79
CLN3-229ENST00000567963 TSKUQ8WUA8 353 aa10.13□□□□□ -0.79
CLN3-229ENST00000567963 SEC11CQ9BY50 192 aa10.13□□□□□ -0.79
CLN3-229ENST00000567963 TMEM191AQ9H0A3 160 aa10.13□□□□□ -0.79
CLN3-229ENST00000567963 IGKV2-24A0A0C4DH68 120 aa10.12□□□□□ -0.79
CLN3-229ENST00000567963 A0A1B0GUT8 65 aa10.12□□□□□ -0.79
CLN3-229ENST00000567963 POLR2KP53803 58 aaKnown RBP10.12□□□□□ -0.79
CLN3-229ENST00000567963 LINC01551Q86U37 167 aa10.12□□□□□ -0.79
CLN3-229ENST00000567963 CCL25O15444 150 aa10.11□□□□□ -0.79
CLN3-229ENST00000567963 RAB4AP20338 218 aa10.11□□□□□ -0.79
CLN3-229ENST00000567963 MRAP2Q96G30 205 aa10.11□□□□□ -0.79
CLN3-229ENST00000567963 TMEM242Q9NWH2 141 aa10.11□□□□□ -0.79
CLN3-229ENST00000567963 NAT8Q9UHE5 227 aa10.11□□□□□ -0.79
CLN3-229ENST00000567963 CARHSP1Q9Y2V2 147 aaKnown RBP10.11□□□□□ -0.79
CLN3-229ENST00000567963 TRBV27A0A0K0K1C4 114 aa10.1□□□□□ -0.79
CLN3-229ENST00000567963 F8W036 122 aa10.1□□□□□ -0.79
CLN3-229ENST00000567963 MRPL52Q86TS9 123 aaKnown RBP10.1□□□□□ -0.79
CLN3-229ENST00000567963 STPG4Q8N801 248 aa10.1□□□□□ -0.79
CLN3-229ENST00000567963 CDC42SE2Q9NRR3 84 aa10.1□□□□□ -0.79
CLN3-229ENST00000567963 A0A096LNI7 61 aa10.1□□□□□ -0.79
CLN3-229ENST00000567963 RPL23P62829 140 aaKnown RBP10.1□□□□□ -0.79
CLN3-229ENST00000567963 TMEM241Q24JQ0 296 aa10.1□□□□□ -0.79
CLN3-229ENST00000567963 OSTCQ9NRP0 149 aa10.1□□□□□ -0.79
CLN3-229ENST00000567963 IGHV1-58A0A0C4DH39 117 aa10.09□□□□□ -0.79
CLN3-229ENST00000567963 PNRC1Q12796 327 aaPredicted RBP10.09□□□□□ -0.79
CLN3-229ENST00000567963 SS18Q15532 418 aa10.09□□□□□ -0.79
CLN3-229ENST00000567963 AMN1Q8IY45 258 aa10.09□□□□□ -0.79
CLN3-229ENST00000567963 ZNF664Q8N3J9 261 aa10.09□□□□□ -0.79
CLN3-229ENST00000567963 LINC00526Q96FQ7 95 aa10.09□□□□□ -0.79
CLN3-229ENST00000567963 CD164L2Q6UWJ8 174 aa10.08□□□□□ -0.8
CLN3-229ENST00000567963 LINC00474Q9P2X8 69 aa10.08□□□□□ -0.8
CLN3-229ENST00000567963 TNXBP22105 4242 aa10.07□□□□□ -0.8
CLN3-229ENST00000567963 C7orf77A4D0Y5 90 aa10.07□□□□□ -0.8
CLN3-229ENST00000567963 ISOC2Q96AB3 205 aa10.07□□□□□ -0.8
CLN3-229ENST00000567963 VCYO14598 125 aa10.06□□□□□ -0.8
CLN3-229ENST00000567963 PRR3P79522 188 aaKnown RBP10.06□□□□□ -0.8
CLN3-229ENST00000567963 NUP35Q8NFH5 326 aa10.06□□□□□ -0.8
CLN3-229ENST00000567963 CARD19Q96LW7 228 aa10.06□□□□□ -0.8
CLN3-229ENST00000567963 PKIGQ9Y2B9 76 aa10.06□□□□□ -0.8
CLN3-229ENST00000567963 V9GYV3 84 aa10.06□□□□□ -0.8
CLN3-229ENST00000567963 SMKR1H3BMG3 65 aa10.05□□□□□ -0.8
CLN3-229ENST00000567963 ZNF561-AS1K7EIQ3 104 aa10.05□□□□□ -0.8
CLN3-229ENST00000567963 RIGQ13278 110 aa10.05□□□□□ -0.8
CLN3-229ENST00000567963 ADIRFQ15847 76 aa10.05□□□□□ -0.8
CLN3-229ENST00000567963 PPP1R17O96001 155 aa10.04□□□□□ -0.8
CLN3-229ENST00000567963 CSDC2Q9Y534 153 aaKnown RBP10.04□□□□□ -0.8
CLN3-229ENST00000567963 C1orf196B1AJZ1 125 aa10.04□□□□□ -0.8
CLN3-229ENST00000567963 FCER1GP30273 86 aa10.04□□□□□ -0.8
CLN3-229ENST00000567963 SUMO2P61956 95 aaKnown RBP10.04□□□□□ -0.8
CLN3-229ENST00000567963 SYCNQ0VAF6 134 aa10.04□□□□□ -0.8
CLN3-229ENST00000567963 NRACQ8N912 160 aa10.04□□□□□ -0.8
CLN3-229ENST00000567963 LINC01600Q96MT4 127 aa10.04□□□□□ -0.8
CLN3-229ENST00000567963 NAT8BQ9UHF3 227 aa10.03□□□□□ -0.8
CLN3-229ENST00000567963 UBE2D4Q9Y2X8 147 aa10.03□□□□□ -0.8
CLN3-229ENST00000567963 APOC3P02656 99 aa10.02□□□□□ -0.81
CLN3-229ENST00000567963 CAMPP49913 170 aa10.02□□□□□ -0.81
CLN3-229ENST00000567963 SVBPQ8N300 66 aa10.02□□□□□ -0.81
CLN3-229ENST00000567963 KIR2DL4Q99706 377 aa10.02□□□□□ -0.81
CLN3-229ENST00000567963 IGLV4-69A0A075B6H9 119 aa10.01□□□□□ -0.81
CLN3-229ENST00000567963 ATP6V1G1O75348 118 aa10.01□□□□□ -0.81
CLN3-229ENST00000567963 MALP21145 153 aa10.01□□□□□ -0.81
CLN3-229ENST00000567963 SMAGPQ0VAQ4 97 aa10.01□□□□□ -0.81
CLN3-229ENST00000567963 COX7A2LO14548 114 aa10□□□□□ -0.81
CLN3-229ENST00000567963 PPP1R2P9O14990 202 aa10□□□□□ -0.81
CLN3-229ENST00000567963 PTTG1IPP53801 180 aa10□□□□□ -0.81
CLN3-229ENST00000567963 RHEBQ15382 184 aa10□□□□□ -0.81
CLN3-229ENST00000567963 MRPL51Q4U2R6 128 aaKnown RBP10□□□□□ -0.81
CLN3-229ENST00000567963 RNASE13Q5GAN3 156 aaKnown RBP10□□□□□ -0.81
CLN3-229ENST00000567963 FAM104BQ5XKR9 115 aa10□□□□□ -0.81
CLN3-229ENST00000567963 SNAPINO95295 136 aa9.99□□□□□ -0.81
CLN3-229ENST00000567963 SPINK6Q6UWN8 80 aa9.99□□□□□ -0.81
CLN3-229ENST00000567963 ANAPC16Q96DE5 110 aa9.99□□□□□ -0.81
CLN3-229ENST00000567963 TRAV13-1A0A0B4J241 112 aa9.98□□□□□ -0.81
CLN3-229ENST00000567963 LOC107984640A0A0U1RRK4 108 aa9.98□□□□□ -0.81
CLN3-229ENST00000567963 SMIM27A0A1W2PRY6 76 aa9.98□□□□□ -0.81
CLN3-229ENST00000567963 Q6ZRP5 223 aa9.98□□□□□ -0.81
CLN3-229ENST00000567963 TRBV24-1A0A075B6N3 115 aa9.98□□□□□ -0.81
CLN3-229ENST00000567963 MT-ND4LP03901 98 aa9.98□□□□□ -0.81
CLN3-229ENST00000567963 GAGE2BQ13066 116 aa9.98□□□□□ -0.81
CLN3-229ENST00000567963 SRSF9Q13242 221 aaKnown RBP eCLIP9.98□□□□□ -0.81
CLN3-229ENST00000567963 TMEM18Q96B42 140 aa9.98□□□□□ -0.81
CLN3-229ENST00000567963 C20orf78Q9BR46 151 aa9.98□□□□□ -0.81
CLN3-229ENST00000567963 TIMM21Q9BVV7 248 aa9.98□□□□□ -0.81
CLN3-229ENST00000567963 CTDSP1Q9GZU7 261 aa9.98□□□□□ -0.81
CLN3-229ENST00000567963 S100A1P23297 94 aa9.97□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms