RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 LRP2P98164 4655 aa10.71□□□□□ -0.69
CLN3-216ENST00000565316 A0A1B0GUT8 65 aa10.71□□□□□ -0.69
CLN3-216ENST00000565316 TSKUQ8WUA8 353 aa10.71□□□□□ -0.69
CLN3-216ENST00000565316 MRAP2Q96G30 205 aa10.71□□□□□ -0.69
CLN3-216ENST00000565316 CDC42SE2Q9NRR3 84 aa10.71□□□□□ -0.69
CLN3-216ENST00000565316 TMEM242Q9NWH2 141 aa10.71□□□□□ -0.69
CLN3-216ENST00000565316 TRBV27A0A0K0K1C4 114 aa10.7□□□□□ -0.7
CLN3-216ENST00000565316 ALKAL2Q6UX46 152 aa10.7□□□□□ -0.7
CLN3-216ENST00000565316 BORCS7Q96B45 105 aa10.7□□□□□ -0.7
CLN3-216ENST00000565316 LINC01600Q96MT4 127 aa10.7□□□□□ -0.7
CLN3-216ENST00000565316 PKIGQ9Y2B9 76 aa10.7□□□□□ -0.7
CLN3-216ENST00000565316 HIGD1CA8MV81 97 aa10.69□□□□□ -0.7
CLN3-216ENST00000565316 RAB4AP20338 218 aa10.69□□□□□ -0.7
CLN3-216ENST00000565316 CD164L2Q6UWJ8 174 aa10.69□□□□□ -0.7
CLN3-216ENST00000565316 LINC01551Q86U37 167 aa10.69□□□□□ -0.7
CLN3-216ENST00000565316 SS18Q15532 418 aa10.68□□□□□ -0.7
CLN3-216ENST00000565316 ZNF664Q8N3J9 261 aa10.68□□□□□ -0.7
CLN3-216ENST00000565316 LINC00526Q96FQ7 95 aa10.68□□□□□ -0.7
CLN3-216ENST00000565316 CARD19Q96LW7 228 aa10.68□□□□□ -0.7
CLN3-216ENST00000565316 SMIM7Q9BQ49 75 aa10.68□□□□□ -0.7
CLN3-216ENST00000565316 OSTCQ9NRP0 149 aa10.68□□□□□ -0.7
CLN3-216ENST00000565316 CEBPGP53567 150 aa10.67□□□□□ -0.7
CLN3-216ENST00000565316 C7orf77A4D0Y5 90 aa10.66□□□□□ -0.7
CLN3-216ENST00000565316 AMN1Q8IY45 258 aa10.66□□□□□ -0.7
CLN3-216ENST00000565316 VCYO14598 125 aa10.65□□□□□ -0.7
CLN3-216ENST00000565316 SYCNQ0VAF6 134 aa10.65□□□□□ -0.7
CLN3-216ENST00000565316 AKAP14Q86UN6 197 aa10.65□□□□□ -0.7
CLN3-216ENST00000565316 CSDC2Q9Y534 153 aaKnown RBP10.65□□□□□ -0.7
CLN3-216ENST00000565316 ZNF561-AS1K7EIQ3 104 aa10.64□□□□□ -0.71
CLN3-216ENST00000565316 SPINK6Q6UWN8 80 aa10.64□□□□□ -0.71
CLN3-216ENST00000565316 EIF5A2Q9GZV4 153 aaKnown RBP10.64□□□□□ -0.71
CLN3-216ENST00000565316 ZNF727A8MUV8 499 aa10.63□□□□□ -0.71
CLN3-216ENST00000565316 C1orf196B1AJZ1 125 aa10.63□□□□□ -0.71
CLN3-216ENST00000565316 PPP1R17O96001 155 aa10.63□□□□□ -0.71
CLN3-216ENST00000565316 CAMPP49913 170 aa10.63□□□□□ -0.71
CLN3-216ENST00000565316 SRSF9Q13242 221 aaKnown RBP eCLIP10.63□□□□□ -0.71
CLN3-216ENST00000565316 NRACQ8N912 160 aa10.63□□□□□ -0.71
CLN3-216ENST00000565316 V9GYV3 84 aa10.63□□□□□ -0.71
CLN3-216ENST00000565316 A0A0J9YXV3 536 aa10.62□□□□□ -0.71
CLN3-216ENST00000565316 SMKR1H3BMG3 65 aa10.62□□□□□ -0.71
CLN3-216ENST00000565316 SRP19P09132 144 aaKnown RBP10.62□□□□□ -0.71
CLN3-216ENST00000565316 PTTG1IPP53801 180 aa10.62□□□□□ -0.71
CLN3-216ENST00000565316 KRTAP10-8P60410 259 aa10.62□□□□□ -0.71
CLN3-216ENST00000565316 RIGQ13278 110 aa10.62□□□□□ -0.71
CLN3-216ENST00000565316 NUP35Q8NFH5 326 aa10.62□□□□□ -0.71
CLN3-216ENST00000565316 FCER1GP30273 86 aa10.61□□□□□ -0.71
CLN3-216ENST00000565316 SUMO2P61956 95 aaKnown RBP10.61□□□□□ -0.71
CLN3-216ENST00000565316 Q6ZRP5 223 aa10.61□□□□□ -0.71
CLN3-216ENST00000565316 ISOC2Q96AB3 205 aa10.61□□□□□ -0.71
CLN3-216ENST00000565316 UBE2D4Q9Y2X8 147 aa10.61□□□□□ -0.71
CLN3-216ENST00000565316 IGLV4-69A0A075B6H9 119 aa10.6□□□□□ -0.71
CLN3-216ENST00000565316 LOC107984640A0A0U1RRK4 108 aa10.6□□□□□ -0.71
CLN3-216ENST00000565316 COX7A2LO14548 114 aa10.6□□□□□ -0.71
CLN3-216ENST00000565316 SMAGPQ0VAQ4 97 aa10.6□□□□□ -0.71
CLN3-216ENST00000565316 REG3GQ6UW15 175 aa10.6□□□□□ -0.71
CLN3-216ENST00000565316 MALP21145 153 aa10.59□□□□□ -0.71
CLN3-216ENST00000565316 KIR2DL4Q99706 377 aa10.59□□□□□ -0.71
CLN3-216ENST00000565316 RNF213Q63HN8 5207 aa10.59□□□□□ -0.71
CLN3-216ENST00000565316 hCG_2014768A0A024R1R8 64 aa10.58□□□□□ -0.71
CLN3-216ENST00000565316 PPP1R2P9O14990 202 aa10.58□□□□□ -0.71
CLN3-216ENST00000565316 FAM104BQ5XKR9 115 aa10.58□□□□□ -0.71
CLN3-216ENST00000565316 C2orf48Q96LS8 159 aa10.58□□□□□ -0.71
CLN3-216ENST00000565316 TIMM21Q9BVV7 248 aa10.58□□□□□ -0.71
CLN3-216ENST00000565316 NAT8BQ9UHF3 227 aa10.58□□□□□ -0.71
CLN3-216ENST00000565316 GAGE2BQ13066 116 aa10.58□□□□□ -0.72
CLN3-216ENST00000565316 ODF1Q14990 250 aa10.58□□□□□ -0.72
CLN3-216ENST00000565316 MRPL51Q4U2R6 128 aaKnown RBP10.58□□□□□ -0.72
CLN3-216ENST00000565316 TRAV13-1A0A0B4J241 112 aa10.57□□□□□ -0.72
CLN3-216ENST00000565316 A0A1W2PNN7 141 aa10.57□□□□□ -0.72
CLN3-216ENST00000565316 APOMO95445 188 aa10.57□□□□□ -0.72
CLN3-216ENST00000565316 RPL32P62910 135 aaKnown RBP10.57□□□□□ -0.72
CLN3-216ENST00000565316 TMEM241Q24JQ0 296 aa10.57□□□□□ -0.72
CLN3-216ENST00000565316 FAM74A3Q4VXF1 159 aa10.57□□□□□ -0.72
CLN3-216ENST00000565316 RNASE13Q5GAN3 156 aaKnown RBP10.57□□□□□ -0.72
CLN3-216ENST00000565316 C20orf78Q9BR46 151 aa10.57□□□□□ -0.72
CLN3-216ENST00000565316 TRBV24-1A0A075B6N3 115 aa10.56□□□□□ -0.72
CLN3-216ENST00000565316 LINC00862A6NCI5 91 aa10.56□□□□□ -0.72
CLN3-216ENST00000565316 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP10.56□□□□□ -0.72
CLN3-216ENST00000565316 RPL23P62829 140 aaKnown RBP10.56□□□□□ -0.72
CLN3-216ENST00000565316 Q6ZUT4 128 aa10.56□□□□□ -0.72
CLN3-216ENST00000565316 CAMK2N2Q96S95 79 aa10.56□□□□□ -0.72
CLN3-216ENST00000565316 A0A1B0GVG6 124 aa10.55□□□□□ -0.72
CLN3-216ENST00000565316 SMIM27A0A1W2PRY6 76 aa10.55□□□□□ -0.72
CLN3-216ENST00000565316 RNF151Q2KHN1 245 aa10.55□□□□□ -0.72
CLN3-216ENST00000565316 C5orf38Q86SI9 138 aa10.55□□□□□ -0.72
CLN3-216ENST00000565316 FAM104AQ969W3 186 aa10.55□□□□□ -0.72
CLN3-216ENST00000565316 TMEM18Q96B42 140 aa10.55□□□□□ -0.72
CLN3-216ENST00000565316 A0A1B0GW15 77 aa10.53□□□□□ -0.72
CLN3-216ENST00000565316 TCAPO15273 167 aa10.53□□□□□ -0.72
CLN3-216ENST00000565316 C9orf116Q5BN46 136 aaPredicted RBP10.53□□□□□ -0.72
CLN3-216ENST00000565316 C9JQL5 133 aa10.52□□□□□ -0.73
CLN3-216ENST00000565316 SPAG11BQ08648 103 aa10.52□□□□□ -0.73
CLN3-216ENST00000565316 ADIRFQ15847 76 aa10.52□□□□□ -0.73
CLN3-216ENST00000565316 OR10D4PQ8NGN7 298 aa10.52□□□□□ -0.73
CLN3-216ENST00000565316 NAT8Q9UHE5 227 aa10.52□□□□□ -0.73
CLN3-216ENST00000565316 PSORS1C2Q9UIG4 136 aa10.52□□□□□ -0.73
CLN3-216ENST00000565316 TNFRSF6BO95407 300 aa10.51□□□□□ -0.73
CLN3-216ENST00000565316 CKS2P33552 79 aa10.51□□□□□ -0.73
CLN3-216ENST00000565316 RPL39P62891 51 aaKnown RBP10.51□□□□□ -0.73
CLN3-216ENST00000565316 IGHV3OR16-9A0A0B4J2B5 98 aa10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 137.9 ms