RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 MPV17L2Q567V2 206 aa8.8□□□□□ -1
CLK3-214ENST00000564096 UPK3BQ9BT76 320 aa8.8□□□□□ -1
CLK3-214ENST00000564096 LINC00588Q9Y4M8 146 aa8.8□□□□□ -1
CLK3-214ENST00000564096 PRSS1P07477 247 aa8.79□□□□□ -1
CLK3-214ENST00000564096 AKR1D1P51857 326 aa8.79□□□□□ -1
CLK3-214ENST00000564096 RBX1P62877 108 aa8.79□□□□□ -1
CLK3-214ENST00000564096 Q6ZUT4 128 aa8.79□□□□□ -1
CLK3-214ENST00000564096 WFDC10BQ8IUB3 73 aa8.79□□□□□ -1
CLK3-214ENST00000564096 OR10D4PQ8NGN7 298 aa8.79□□□□□ -1
CLK3-214ENST00000564096 VCX2Q9H322 139 aa8.79□□□□□ -1
CLK3-214ENST00000564096 H0Y8G0 127 aa8.78□□□□□ -1
CLK3-214ENST00000564096 PMVKQ15126 192 aa8.78□□□□□ -1
CLK3-214ENST00000564096 LINC01556Q5JQF7 62 aa8.78□□□□□ -1
CLK3-214ENST00000564096 PET117Q6UWS5 81 aa8.78□□□□□ -1
CLK3-214ENST00000564096 LINC00173Q6ZV60 143 aa8.78□□□□□ -1
CLK3-214ENST00000564096 ZNF664Q8N3J9 261 aa8.78□□□□□ -1
CLK3-214ENST00000564096 BAALCQ8WXS3 180 aa8.78□□□□□ -1
CLK3-214ENST00000564096 TRAV12-1A0A0B4J245 112 aa8.77□□□□□ -1.01
CLK3-214ENST00000564096 SYS1-DBNDD2H3BUS1 97 aa8.77□□□□□ -1.01
CLK3-214ENST00000564096 SIVA1O15304 175 aa8.77□□□□□ -1.01
CLK3-214ENST00000564096 CRPP02741 224 aa8.77□□□□□ -1.01
CLK3-214ENST00000564096 ANGP03950 147 aaKnown RBP8.77□□□□□ -1.01
CLK3-214ENST00000564096 C3orf79P0CE67 100 aa8.77□□□□□ -1.01
CLK3-214ENST00000564096 C10orf126Q8N4M7 172 aa8.77□□□□□ -1.01
CLK3-214ENST00000564096 DNAH10OSP0CZ25 163 aa8.76□□□□□ -1.01
CLK3-214ENST00000564096 SPATA12Q7Z6I5 190 aa8.76□□□□□ -1.01
CLK3-214ENST00000564096 Q8N976 141 aa8.76□□□□□ -1.01
CLK3-214ENST00000564096 CDC42SE2Q9NRR3 84 aa8.76□□□□□ -1.01
CLK3-214ENST00000564096 IGLV4-60A0A075B6I1 120 aa8.75□□□□□ -1.01
CLK3-214ENST00000564096 TRAV9-2A0A087WT02 112 aa8.75□□□□□ -1.01
CLK3-214ENST00000564096 J3QL48 77 aa8.75□□□□□ -1.01
CLK3-214ENST00000564096 K7EP13 123 aa8.75□□□□□ -1.01
CLK3-214ENST00000564096 IGHV3-30P01768 117 aa8.75□□□□□ -1.01
CLK3-214ENST00000564096 IGHV3-33P01772 117 aa8.75□□□□□ -1.01
CLK3-214ENST00000564096 IGHV3-30-3P0DP02 117 aa8.75□□□□□ -1.01
CLK3-214ENST00000564096 IGHV3-30-5P0DP03 117 aa8.75□□□□□ -1.01
CLK3-214ENST00000564096 CASC10Q5T4H9 136 aa8.75□□□□□ -1.01
CLK3-214ENST00000564096 AMELXQ99217 191 aa8.75□□□□□ -1.01
CLK3-214ENST00000564096 F8VRH5 84 aa8.74□□□□□ -1.01
CLK3-214ENST00000564096 PLNP26678 52 aa8.74□□□□□ -1.01
CLK3-214ENST00000564096 SEC11AP67812 179 aa8.74□□□□□ -1.01
CLK3-214ENST00000564096 RNASE13Q5GAN3 156 aaKnown RBP8.74□□□□□ -1.01
CLK3-214ENST00000564096 LGALS9CQ6DKI2 356 aa8.74□□□□□ -1.01
CLK3-214ENST00000564096 OPRPNQ99935 248 aaPredicted RBP8.74□□□□□ -1.01
CLK3-214ENST00000564096 CST9LQ9H4G1 147 aa8.74□□□□□ -1.01
CLK3-214ENST00000564096 PGPEP1Q9NXJ5 209 aa8.74□□□□□ -1.01
CLK3-214ENST00000564096 CHTOPQ9Y3Y2 248 aaKnown RBP8.74□□□□□ -1.01
CLK3-214ENST00000564096 PRSS29PA6NIE9 313 aa8.73□□□□□ -1.01
CLK3-214ENST00000564096 REG3AQ06141 175 aa8.73□□□□□ -1.01
CLK3-214ENST00000564096 TTC32Q5I0X7 151 aa8.73□□□□□ -1.01
CLK3-214ENST00000564096 LINC01545Q5VT33 79 aa8.73□□□□□ -1.01
CLK3-214ENST00000564096 LINC00269Q8N2A0 174 aa8.73□□□□□ -1.01
CLK3-214ENST00000564096 Q9H8V8 135 aa8.73□□□□□ -1.01
CLK3-214ENST00000564096 DNAH7Q8WXX0 4024 aa8.72□□□□□ -1.01
CLK3-214ENST00000564096 TRAV13-1A0A0B4J241 112 aa8.72□□□□□ -1.01
CLK3-214ENST00000564096 IGKV3OR2-268A0A0C4DH90 116 aa8.72□□□□□ -1.01
CLK3-214ENST00000564096 CCL25O15444 150 aa8.72□□□□□ -1.01
CLK3-214ENST00000564096 SCGB1D1O95968 90 aa8.72□□□□□ -1.01
CLK3-214ENST00000564096 ODF1Q14990 250 aa8.72□□□□□ -1.01
CLK3-214ENST00000564096 SS18Q15532 418 aa8.72□□□□□ -1.01
CLK3-214ENST00000564096 KLK12Q9UKR0 248 aa8.72□□□□□ -1.01
CLK3-214ENST00000564096 LOC105371267A0A1B0GV96 52 aa8.71□□□□□ -1.02
CLK3-214ENST00000564096 DPM2O94777 84 aa8.71□□□□□ -1.02
CLK3-214ENST00000564096 UBE2D1P51668 147 aa8.71□□□□□ -1.02
CLK3-214ENST00000564096 CLPSL2Q6UWE3 100 aa8.71□□□□□ -1.02
CLK3-214ENST00000564096 Q8N3U1 123 aa8.71□□□□□ -1.02
CLK3-214ENST00000564096 CHAC1Q9BUX1 264 aa8.71□□□□□ -1.02
CLK3-214ENST00000564096 GEMIN7Q9H840 131 aaKnown RBP8.71□□□□□ -1.02
CLK3-214ENST00000564096 DYNC2H1Q8NCM8 4307 aaKnown RBP8.71□□□□□ -1.02
CLK3-214ENST00000564096 IGKCP01834 107 aa8.7□□□□□ -1.02
CLK3-214ENST00000564096 IGLC3P0DOY3 106 aa8.7□□□□□ -1.02
CLK3-214ENST00000564096 HERVK_113P63121 156 aa8.7□□□□□ -1.02
CLK3-214ENST00000564096 JOSD1Q15040 202 aaPredicted RBP8.7□□□□□ -1.02
CLK3-214ENST00000564096 MIAQ16674 131 aa8.7□□□□□ -1.02
CLK3-214ENST00000564096 FAM104AQ969W3 186 aa8.7□□□□□ -1.02
CLK3-214ENST00000564096 UBE2WQ96B02 151 aa8.7□□□□□ -1.02
CLK3-214ENST00000564096 PRR34Q9NV39 138 aa8.7□□□□□ -1.02
CLK3-214ENST00000564096 MRPL35Q9NZE8 188 aaKnown RBP8.7□□□□□ -1.02
CLK3-214ENST00000564096 STARD9Q9P2P6 4700 aa8.69□□□□□ -1.02
CLK3-214ENST00000564096 TRAV8-3A0A0A6YYJ7 113 aa8.69□□□□□ -1.02
CLK3-214ENST00000564096 TRAV8-4A0A0B4J246 113 aa8.69□□□□□ -1.02
CLK3-214ENST00000564096 LINC00959A0A1B0GUT2 108 aa8.69□□□□□ -1.02
CLK3-214ENST00000564096 TINCRA0A1B0GVN0 87 aa8.69□□□□□ -1.02
CLK3-214ENST00000564096 SMIM6P0DI80 62 aa8.69□□□□□ -1.02
CLK3-214ENST00000564096 ZC2HC1BQ5TFG8 222 aa8.69□□□□□ -1.02
CLK3-214ENST00000564096 RMI2Q96E14 147 aa8.69□□□□□ -1.02
CLK3-214ENST00000564096 IGLV4-69A0A075B6H9 119 aa8.68□□□□□ -1.02
CLK3-214ENST00000564096 H3BRM9 83 aa8.68□□□□□ -1.02
CLK3-214ENST00000564096 FAM19A3Q7Z5A8 133 aa8.68□□□□□ -1.02
CLK3-214ENST00000564096 NFE4Q86UQ8 179 aa8.68□□□□□ -1.02
CLK3-214ENST00000564096 PMCHL2Q9BQD1 86 aa8.68□□□□□ -1.02
CLK3-214ENST00000564096 A0A0J9YXV3 536 aa8.67□□□□□ -1.02
CLK3-214ENST00000564096 IBA57-AS1B1ANH7 110 aa8.67□□□□□ -1.02
CLK3-214ENST00000564096 HSBP1L1C9JCN9 74 aa8.67□□□□□ -1.02
CLK3-214ENST00000564096 HERVK_113P61574 105 aa8.67□□□□□ -1.02
CLK3-214ENST00000564096 LINC00469Q8N7U9 141 aa8.67□□□□□ -1.02
CLK3-214ENST00000564096 LINC00476Q8WZB0 136 aa8.67□□□□□ -1.02
CLK3-214ENST00000564096 C1orf43Q9BWL3 253 aa8.67□□□□□ -1.02
CLK3-214ENST00000564096 C11orf86A6NJI1 115 aa8.66□□□□□ -1.02
CLK3-214ENST00000564096 LY6G6CO95867 125 aa8.66□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 1052.9 ms