RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 Q6ZTC4 211 aa14.85□□□□□ -0.03
CLN3-209ENST00000561689 LINC00469Q8N7U9 141 aa14.85□□□□□ -0.03
CLN3-209ENST00000561689 FAM104AQ969W3 186 aa14.85□□□□□ -0.03
CLN3-209ENST00000561689 DPM2O94777 84 aa14.84□□□□□ -0.03
CLN3-209ENST00000561689 IGKCP01834 107 aa14.84□□□□□ -0.03
CLN3-209ENST00000561689 F8VRH5 84 aa14.84□□□□□ -0.03
CLN3-209ENST00000561689 NANOS2P60321 138 aaKnown RBP14.84□□□□□ -0.03
CLN3-209ENST00000561689 RNASE13Q5GAN3 156 aaKnown RBP14.83□□□□□ -0.04
CLN3-209ENST00000561689 TMEM243Q9BU79 118 aa14.83□□□□□ -0.04
CLN3-209ENST00000561689 SPANXA1Q9NS26 97 aa14.83□□□□□ -0.04
CLN3-209ENST00000561689 TRBV25-1A0A075B6N4 114 aa14.82□□□□□ -0.04
CLN3-209ENST00000561689 TRBV6-8A0A0A6YYG3 113 aa14.82□□□□□ -0.04
CLN3-209ENST00000561689 COX8AP10176 69 aa14.82□□□□□ -0.04
CLN3-209ENST00000561689 COL5A1-AS1Q5SY13 56 aa14.82□□□□□ -0.04
CLN3-209ENST00000561689 C11orf45Q8TAV5 145 aa14.82□□□□□ -0.04
CLN3-209ENST00000561689 VCX2Q9H322 139 aa14.82□□□□□ -0.04
CLN3-209ENST00000561689 FGF6P10767 208 aa14.81□□□□□ -0.04
CLN3-209ENST00000561689 PLNP26678 52 aa14.8□□□□□ -0.04
CLN3-209ENST00000561689 HUWE1Q7Z6Z7 4374 aaKnown RBP14.8□□□□□ -0.04
CLN3-209ENST00000561689 UBE2L6O14933 153 aa14.8□□□□□ -0.04
CLN3-209ENST00000561689 DGAT2L7PQ6IED9 249 aa14.8□□□□□ -0.04
CLN3-209ENST00000561689 Q6ZUT4 128 aa14.8□□□□□ -0.04
CLN3-209ENST00000561689 PAPPA-AS1Q5QFB9 102 aa14.79□□□□□ -0.04
CLN3-209ENST00000561689 C2orf91Q6ZV80 131 aa14.79□□□□□ -0.04
CLN3-209ENST00000561689 IGLV4-69A0A075B6H9 119 aa14.78□□□□□ -0.04
CLN3-209ENST00000561689 MPV17L2Q567V2 206 aa14.78□□□□□ -0.04
CLN3-209ENST00000561689 AMELXQ99217 191 aa14.78□□□□□ -0.04
CLN3-209ENST00000561689 CHCHD5Q9BSY4 110 aa14.78□□□□□ -0.04
CLN3-209ENST00000561689 TIMM21Q9BVV7 248 aa14.78□□□□□ -0.04
CLN3-209ENST00000561689 GAGE6Q13070 117 aa14.77□□□□□ -0.04
CLN3-209ENST00000561689 KRTAP21-3Q3LHN1 58 aa14.77□□□□□ -0.04
CLN3-209ENST00000561689 TMEM97Q5BJF2 176 aa14.77□□□□□ -0.04
CLN3-209ENST00000561689 NPSP0C0P6 89 aa14.76□□□□□ -0.05
CLN3-209ENST00000561689 MRPL23Q16540 153 aaKnown RBP14.76□□□□□ -0.05
CLN3-209ENST00000561689 AMMECR1LQ6DCA0 310 aa14.76□□□□□ -0.05
CLN3-209ENST00000561689 ICOSQ9Y6W8 199 aa14.76□□□□□ -0.05
CLN3-209ENST00000561689 ZNF25P17030 456 aaPredicted RBP14.76□□□□□ -0.05
CLN3-209ENST00000561689 C11orf86A6NJI1 115 aa14.75□□□□□ -0.05
CLN3-209ENST00000561689 MRPS36P82909 103 aaKnown RBP14.74□□□□□ -0.05
CLN3-209ENST00000561689 Q6ZVH6 145 aa14.74□□□□□ -0.05
CLN3-209ENST00000561689 DEFB131BA0A096LNP1 70 aa14.74□□□□□ -0.05
CLN3-209ENST00000561689 PCP2Q8IVA1 136 aa14.74□□□□□ -0.05
CLN3-209ENST00000561689 OR5A1Q8NGJ0 315 aa14.74□□□□□ -0.05
CLN3-209ENST00000561689 CSDC2Q9Y534 153 aaKnown RBP14.74□□□□□ -0.05
CLN3-209ENST00000561689 IGKV2D-26A0A0A0MRZ7 120 aa14.73□□□□□ -0.05
CLN3-209ENST00000561689 A0A0J9YXV3 536 aa14.73□□□□□ -0.05
CLN3-209ENST00000561689 H7C423 109 aa14.73□□□□□ -0.05
CLN3-209ENST00000561689 NMUP48645 174 aa14.73□□□□□ -0.05
CLN3-209ENST00000561689 BVES-AS1Q5T3Y7 98 aa14.73□□□□□ -0.05
CLN3-209ENST00000561689 BOD1L2Q8IYS8 172 aa14.73□□□□□ -0.05
CLN3-209ENST00000561689 B9D2Q9BPU9 175 aa14.73□□□□□ -0.05
CLN3-209ENST00000561689 TMEM101Q96IK0 257 aa14.72□□□□□ -0.05
CLN3-209ENST00000561689 CDC42SE2Q9NRR3 84 aa14.72□□□□□ -0.05
CLN3-209ENST00000561689 SMAGPQ0VAQ4 97 aa14.71□□□□□ -0.05
CLN3-209ENST00000561689 CHAC1Q9BUX1 264 aa14.71□□□□□ -0.05
CLN3-209ENST00000561689 COL7A1Q02388 2944 aa14.71□□□□□ -0.05
CLN3-209ENST00000561689 TMEM262E9PQX1 116 aa14.7□□□□□ -0.06
CLN3-209ENST00000561689 TTTY13Q9BZ97 58 aa14.7□□□□□ -0.06
CLN3-209ENST00000561689 DNAH9Q9NYC9 4486 aa14.7□□□□□ -0.06
CLN3-209ENST00000561689 IGLV4-60A0A075B6I1 120 aa14.69□□□□□ -0.06
CLN3-209ENST00000561689 TMEM170BQ5T4T1 132 aa14.69□□□□□ -0.06
CLN3-209ENST00000561689 SH2D6Q7Z4S9 175 aa14.69□□□□□ -0.06
CLN3-209ENST00000561689 NFE4Q86UQ8 179 aa14.69□□□□□ -0.06
CLN3-209ENST00000561689 H3BNG1 76 aa14.69□□□□□ -0.06
CLN3-209ENST00000561689 MEGF8Q7Z7M0 2845 aa14.68□□□□□ -0.06
CLN3-209ENST00000561689 UBE2D1P51668 147 aa14.67□□□□□ -0.06
CLN3-209ENST00000561689 TRAV13-1A0A0B4J241 112 aa14.66□□□□□ -0.06
CLN3-209ENST00000561689 DLEU1O43261 78 aa14.66□□□□□ -0.06
CLN3-209ENST00000561689 ZNF22P17026 224 aaPredicted RBP14.65□□□□□ -0.06
CLN3-209ENST00000561689 LYPD5Q6UWN5 251 aa14.65□□□□□ -0.06
CLN3-209ENST00000561689 TRAV10A0A0B4J240 114 aa14.65□□□□□ -0.06
CLN3-209ENST00000561689 RBX1P62877 108 aa14.65□□□□□ -0.06
CLN3-209ENST00000561689 LELP1Q5T871 98 aa14.64□□□□□ -0.07
CLN3-209ENST00000561689 STAB2Q8WWQ8 2551 aa14.64□□□□□ -0.07
CLN3-209ENST00000561689 IGKV3OR2-268A0A0C4DH90 116 aa14.64□□□□□ -0.07
CLN3-209ENST00000561689 TINCRA0A1B0GVN0 87 aa14.64□□□□□ -0.07
CLN3-209ENST00000561689 COX11Q9Y6N1 276 aa14.64□□□□□ -0.07
CLN3-209ENST00000561689 Q8N3U1 123 aa14.63□□□□□ -0.07
CLN3-209ENST00000561689 TRAV8-6A0A0B4J262 113 aa14.62□□□□□ -0.07
CLN3-209ENST00000561689 TAX1BP3O14907 124 aa14.62□□□□□ -0.07
CLN3-209ENST00000561689 GEMIN7Q9H840 131 aaKnown RBP14.62□□□□□ -0.07
CLN3-209ENST00000561689 A0A1B0GUV1 79 aa14.62□□□□□ -0.07
CLN3-209ENST00000561689 E9PLD3 99 aa14.62□□□□□ -0.07
CLN3-209ENST00000561689 SIVA1O15304 175 aa14.62□□□□□ -0.07
CLN3-209ENST00000561689 LINC00242Q5T6M2 205 aa14.62□□□□□ -0.07
CLN3-209ENST00000561689 HERVK_113P61574 105 aa14.61□□□□□ -0.07
CLN3-209ENST00000561689 COX6A2Q02221 97 aa14.61□□□□□ -0.07
CLN3-209ENST00000561689 TMEM223A0PJW6 202 aa14.6□□□□□ -0.07
CLN3-209ENST00000561689 MAPKAPK5-AS1Q8N8E1 139 aa14.6□□□□□ -0.07
CLN3-209ENST00000561689 ORAOV1Q8WV07 137 aa14.6□□□□□ -0.07
CLN3-209ENST00000561689 IGHV3-64A0A075B6Q5 118 aa14.6□□□□□ -0.07
CLN3-209ENST00000561689 TIRAPP58753 221 aa14.58□□□□□ -0.07
CLN3-209ENST00000561689 CDKN2A-AS1Q9UH64 79 aa14.58□□□□□ -0.07
CLN3-209ENST00000561689 PRKDCP78527 4128 aaKnown RBP14.58□□□□□ -0.08
CLN3-209ENST00000561689 HSD52Q0P140 79 aa14.58□□□□□ -0.08
CLN3-209ENST00000561689 ESRGQ1W209 222 aa14.58□□□□□ -0.08
CLN3-209ENST00000561689 NHLRC4P0CG21 123 aaPredicted RBP14.57□□□□□ -0.08
CLN3-209ENST00000561689 CLPSL2Q6UWE3 100 aa14.57□□□□□ -0.08
CLN3-209ENST00000561689 HERVK_113P63121 156 aa14.56□□□□□ -0.08
CLN3-209ENST00000561689 FAM19A3Q7Z5A8 133 aa14.56□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 126.9 ms