RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 RBMY1A1P0DJD3 496 aaKnown RBP8.3□□□□□ -1.08
LDLR-208ENST00000558518 RBMY1CP0DJD4 496 aa8.3□□□□□ -1.08
LDLR-208ENST00000558518 RBMY1FQ15415 496 aaKnown RBP8.3□□□□□ -1.08
LDLR-208ENST00000558518 PIMREGQ9BSJ6 248 aa8.3□□□□□ -1.08
LDLR-208ENST00000558518 TEX15Q9BXT5 2789 aa8.3□□□□□ -1.08
LDLR-208ENST00000558518 AVPP01185 164 aa8.29□□□□□ -1.08
LDLR-208ENST00000558518 SLURP1P55000 103 aa8.29□□□□□ -1.08
LDLR-208ENST00000558518 C18orf65Q6ZTR6 163 aa8.29□□□□□ -1.08
LDLR-208ENST00000558518 TMEM61Q8N0U2 210 aa8.29□□□□□ -1.08
LDLR-208ENST00000558518 OR13C6PQ8NH95 151 aa8.29□□□□□ -1.08
LDLR-208ENST00000558518 TMEM101Q96IK0 257 aa8.29□□□□□ -1.08
LDLR-208ENST00000558518 C9orf85Q96MD7 179 aa8.29□□□□□ -1.08
LDLR-208ENST00000558518 TRGV1A0A0A0MS02 117 aa8.29□□□□□ -1.08
LDLR-208ENST00000558518 A0A1W2PRX2 142 aa8.29□□□□□ -1.08
LDLR-208ENST00000558518 COX6A2Q02221 97 aa8.29□□□□□ -1.08
LDLR-208ENST00000558518 Q8N2B8 174 aa8.29□□□□□ -1.08
LDLR-208ENST00000558518 CCL19Q99731 98 aa8.29□□□□□ -1.08
LDLR-208ENST00000558518 MXRA5Q9NR99 2828 aa8.29□□□□□ -1.08
LDLR-208ENST00000558518 FAM19A4Q96LR4 140 aa8.29□□□□□ -1.08
LDLR-208ENST00000558518 BAALC-AS2P0C853 105 aa8.28□□□□□ -1.08
LDLR-208ENST00000558518 GNLYP22749 145 aa8.28□□□□□ -1.08
LDLR-208ENST00000558518 TRBV6-5A0A0K0K1A5 114 aa8.28□□□□□ -1.08
LDLR-208ENST00000558518 DAZ2Q13117 558 aaKnown RBP8.28□□□□□ -1.08
LDLR-208ENST00000558518 FBXL19-AS1Q494R0 122 aa8.28□□□□□ -1.08
LDLR-208ENST00000558518 DAZ4Q86SG3 579 aaKnown RBP8.28□□□□□ -1.08
LDLR-208ENST00000558518 DAZ3Q9NR90 486 aaKnown RBP8.28□□□□□ -1.08
LDLR-208ENST00000558518 IGKV3D-7A0A0C4DH55 119 aa8.28□□□□□ -1.08
LDLR-208ENST00000558518 DEFB112Q30KQ8 113 aa8.27□□□□□ -1.09
LDLR-208ENST00000558518 LITAFQ99732 161 aa8.27□□□□□ -1.09
LDLR-208ENST00000558518 YAE1D1Q9NRH1 226 aa8.27□□□□□ -1.09
LDLR-208ENST00000558518 LST1O00453 97 aa8.27□□□□□ -1.09
LDLR-208ENST00000558518 DYNLRB2Q8TF09 96 aa8.27□□□□□ -1.09
LDLR-208ENST00000558518 ATP5G1P05496 136 aa8.27□□□□□ -1.09
LDLR-208ENST00000558518 PFN2P35080 140 aa8.27□□□□□ -1.09
LDLR-208ENST00000558518 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP8.27□□□□□ -1.09
LDLR-208ENST00000558518 LOC107984640A0A0U1RRK4 108 aa8.26□□□□□ -1.09
LDLR-208ENST00000558518 TINCRA0A1B0GVN0 87 aa8.26□□□□□ -1.09
LDLR-208ENST00000558518 C19orf54Q5BKX5 351 aa8.26□□□□□ -1.09
LDLR-208ENST00000558518 H3BT86 120 aa8.25□□□□□ -1.09
LDLR-208ENST00000558518 PPDPFQ9H3Y8 114 aa8.25□□□□□ -1.09
LDLR-208ENST00000558518 GCN1Q92616 2671 aaKnown RBP8.25□□□□□ -1.09
LDLR-208ENST00000558518 K7EQG2 157 aa8.25□□□□□ -1.09
LDLR-208ENST00000558518 DNAL4O96015 105 aa8.25□□□□□ -1.09
LDLR-208ENST00000558518 MRPS36P82909 103 aaKnown RBP8.25□□□□□ -1.09
LDLR-208ENST00000558518 LINC00308Q8TCZ7 52 aa8.25□□□□□ -1.09
LDLR-208ENST00000558518 CFAP46Q8IYW2 2715 aa8.25□□□□□ -1.09
LDLR-208ENST00000558518 A6NDX4 124 aa8.25□□□□□ -1.09
LDLR-208ENST00000558518 LINC00694P0DN24 101 aa8.25□□□□□ -1.09
LDLR-208ENST00000558518 LINC00158P58513 81 aa8.25□□□□□ -1.09
LDLR-208ENST00000558518 SDIM1Q6ZPB5 146 aa8.25□□□□□ -1.09
LDLR-208ENST00000558518 UBE2D4Q9Y2X8 147 aa8.24□□□□□ -1.09
LDLR-208ENST00000558518 MSMBP08118 114 aa8.24□□□□□ -1.09
LDLR-208ENST00000558518 CITED2Q99967 270 aaPredicted RBP8.24□□□□□ -1.09
LDLR-208ENST00000558518 SLPIP03973 132 aa8.23□□□□□ -1.09
LDLR-208ENST00000558518 UBE2L6O14933 153 aa8.23□□□□□ -1.09
LDLR-208ENST00000558518 CHCHD7Q9BUK0 85 aa8.23□□□□□ -1.09
LDLR-208ENST00000558518 C14orf132Q9NPU4 83 aa8.23□□□□□ -1.09
LDLR-208ENST00000558518 ZNF415Q09FC8 603 aa8.23□□□□□ -1.09
LDLR-208ENST00000558518 SMCR5Q8TEV8 140 aa8.22□□□□□ -1.09
LDLR-208ENST00000558518 ZNF462Q96JM2 2506 aa8.22□□□□□ -1.09
LDLR-208ENST00000558518 HIST1H4AP62805 103 aaKnown RBP8.22□□□□□ -1.09
LDLR-208ENST00000558518 DOPEY1Q5JWR5 2465 aa8.22□□□□□ -1.09
LDLR-208ENST00000558518 SOSTDC1Q6X4U4 206 aa8.22□□□□□ -1.09
LDLR-208ENST00000558518 IGLV1-40P01703 118 aa8.21□□□□□ -1.1
LDLR-208ENST00000558518 FAM218AQ96MZ4 157 aa8.21□□□□□ -1.1
LDLR-208ENST00000558518 A0A087WVE0 104 aa8.21□□□□□ -1.1
LDLR-208ENST00000558518 PAX4O43316 350 aa8.21□□□□□ -1.1
LDLR-208ENST00000558518 CRPP02741 224 aa8.21□□□□□ -1.1
LDLR-208ENST00000558518 CLPSL2Q6UWE3 100 aa8.21□□□□□ -1.1
LDLR-208ENST00000558518 FAM104AQ969W3 186 aa8.21□□□□□ -1.1
LDLR-208ENST00000558518 SPANXDQ9BXN6 97 aa8.21□□□□□ -1.1
LDLR-208ENST00000558518 SPANXCQ9NY87 97 aa8.21□□□□□ -1.1
LDLR-208ENST00000558518 TIRAPP58753 221 aa8.2□□□□□ -1.1
LDLR-208ENST00000558518 SPANXA1Q9NS26 97 aa8.2□□□□□ -1.1
LDLR-208ENST00000558518 RBMY1BA6NDE4 496 aaKnown RBP8.2□□□□□ -1.1
LDLR-208ENST00000558518 RBMY1EA6NEQ0 496 aaKnown RBP8.2□□□□□ -1.1
LDLR-208ENST00000558518 COX7A2LO14548 114 aa8.2□□□□□ -1.1
LDLR-208ENST00000558518 RBMY1DP0C7P1 496 aaKnown RBP8.2□□□□□ -1.1
LDLR-208ENST00000558518 PSMB8P28062 276 aa8.2□□□□□ -1.1
LDLR-208ENST00000558518 C5orf38Q86SI9 138 aa8.2□□□□□ -1.1
LDLR-208ENST00000558518 MIR7-3HGQ8N6C7 128 aa8.2□□□□□ -1.1
LDLR-208ENST00000558518 TRGV2A0A075B6R0 118 aa8.19□□□□□ -1.1
LDLR-208ENST00000558518 hADV29S1A0JD25 119 aa8.19□□□□□ -1.1
LDLR-208ENST00000558518 K7EMT4 169 aa8.19□□□□□ -1.1
LDLR-208ENST00000558518 LINC00242Q5T6M2 205 aa8.19□□□□□ -1.1
LDLR-208ENST00000558518 PLA2G2AP14555 144 aa8.18□□□□□ -1.1
LDLR-208ENST00000558518 HERVK_113P63121 156 aa8.18□□□□□ -1.1
LDLR-208ENST00000558518 Q6ZTI0 123 aa8.18□□□□□ -1.1
LDLR-208ENST00000558518 PYGO1Q9Y3Y4 419 aa8.18□□□□□ -1.1
LDLR-208ENST00000558518 LOC100131303A0A0U1RQF7 123 aa8.18□□□□□ -1.1
LDLR-208ENST00000558518 H3BUA1 57 aa8.18□□□□□ -1.1
LDLR-208ENST00000558518 M0QXV9 152 aa8.18□□□□□ -1.1
LDLR-208ENST00000558518 CFAP161Q6P656 301 aa8.18□□□□□ -1.1
LDLR-208ENST00000558518 A0A096LPF7 62 aa8.17□□□□□ -1.1
LDLR-208ENST00000558518 RPL35AP18077 110 aaKnown RBP8.17□□□□□ -1.1
LDLR-208ENST00000558518 WFDC9Q8NEX5 89 aa8.17□□□□□ -1.1
LDLR-208ENST00000558518 C10orf105Q8TEF2 133 aa8.17□□□□□ -1.1
LDLR-208ENST00000558518 NOP10Q9NPE3 64 aaKnown RBP8.17□□□□□ -1.1
LDLR-208ENST00000558518 NCR3O14931 201 aa8.17□□□□□ -1.1
LDLR-208ENST00000558518 NDUFA1O15239 70 aa8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms