RNA–Protein interactions for RNA: ENST00000557740.5

SHMT2-235, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-235ENST00000557740 OSTCQ9NRP0 149 aa9.26□□□□□ -0.93
SHMT2-235ENST00000557740 PKIGQ9Y2B9 76 aa9.26□□□□□ -0.93
SHMT2-235ENST00000557740 PKHD1L1Q86WI1 4243 aa9.25□□□□□ -0.93
SHMT2-235ENST00000557740 LINC00959A0A1B0GUT2 108 aa9.25□□□□□ -0.93
SHMT2-235ENST00000557740 C7orf77A4D0Y5 90 aa9.25□□□□□ -0.93
SHMT2-235ENST00000557740 PHOX2AO14813 284 aa9.25□□□□□ -0.93
SHMT2-235ENST00000557740 ESDP10768 282 aa9.25□□□□□ -0.93
SHMT2-235ENST00000557740 SS18Q15532 418 aa9.25□□□□□ -0.93
SHMT2-235ENST00000557740 AMN1Q8IY45 258 aa9.25□□□□□ -0.93
SHMT2-235ENST00000557740 FAT3Q8TDW7 4589 aa9.25□□□□□ -0.93
SHMT2-235ENST00000557740 IGHV1-58A0A0C4DH39 117 aa9.24□□□□□ -0.93
SHMT2-235ENST00000557740 TRBV27A0A0K0K1C4 114 aa9.24□□□□□ -0.93
SHMT2-235ENST00000557740 RAB4AP20338 218 aa9.24□□□□□ -0.93
SHMT2-235ENST00000557740 FCER1GP30273 86 aa9.24□□□□□ -0.93
SHMT2-235ENST00000557740 MRPL52Q86TS9 123 aaKnown RBP9.24□□□□□ -0.93
SHMT2-235ENST00000557740 HMCN2Q8NDA2 5059 aa9.24□□□□□ -0.93
SHMT2-235ENST00000557740 SRP19P09132 144 aaKnown RBP9.23□□□□□ -0.93
SHMT2-235ENST00000557740 POLR2KP53803 58 aaKnown RBP9.23□□□□□ -0.93
SHMT2-235ENST00000557740 RIGQ13278 110 aa9.23□□□□□ -0.93
SHMT2-235ENST00000557740 STPG4Q8N801 248 aa9.23□□□□□ -0.93
SHMT2-235ENST00000557740 CARD19Q96LW7 228 aa9.23□□□□□ -0.93
SHMT2-235ENST00000557740 LINC00474Q9P2X8 69 aa9.23□□□□□ -0.93
SHMT2-235ENST00000557740 A0A096LNI7 61 aa9.22□□□□□ -0.93
SHMT2-235ENST00000557740 SMKR1H3BMG3 65 aa9.22□□□□□ -0.93
SHMT2-235ENST00000557740 PPP1R17O96001 155 aa9.22□□□□□ -0.93
SHMT2-235ENST00000557740 SMAGPQ0VAQ4 97 aa9.22□□□□□ -0.93
SHMT2-235ENST00000557740 CD164L2Q6UWJ8 174 aa9.22□□□□□ -0.93
SHMT2-235ENST00000557740 ZNF664Q8N3J9 261 aa9.22□□□□□ -0.93
SHMT2-235ENST00000557740 CDC42SE2Q9NRR3 84 aa9.22□□□□□ -0.93
SHMT2-235ENST00000557740 V9GYV3 84 aa9.22□□□□□ -0.93
SHMT2-235ENST00000557740 ZNF561-AS1K7EIQ3 104 aa9.21□□□□□ -0.94
SHMT2-235ENST00000557740 VCYO14598 125 aa9.21□□□□□ -0.94
SHMT2-235ENST00000557740 MT1HL1P0DM35 61 aa9.21□□□□□ -0.94
SHMT2-235ENST00000557740 PRR3P79522 188 aaKnown RBP9.21□□□□□ -0.94
SHMT2-235ENST00000557740 NUP35Q8NFH5 326 aa9.21□□□□□ -0.94
SHMT2-235ENST00000557740 LINC00526Q96FQ7 95 aa9.21□□□□□ -0.94
SHMT2-235ENST00000557740 KIR2DL4Q99706 377 aa9.21□□□□□ -0.94
SHMT2-235ENST00000557740 MALP21145 153 aa9.2□□□□□ -0.94
SHMT2-235ENST00000557740 SUMO2P61956 95 aaKnown RBP9.2□□□□□ -0.94
SHMT2-235ENST00000557740 TMEM241Q24JQ0 296 aa9.2□□□□□ -0.94
SHMT2-235ENST00000557740 ISOC2Q96AB3 205 aa9.2□□□□□ -0.94
SHMT2-235ENST00000557740 NAT8BQ9UHF3 227 aa9.2□□□□□ -0.94
SHMT2-235ENST00000557740 SYCNQ0VAF6 134 aa9.19□□□□□ -0.94
SHMT2-235ENST00000557740 ADIRFQ15847 76 aa9.19□□□□□ -0.94
SHMT2-235ENST00000557740 FAM74A3Q4VXF1 159 aa9.19□□□□□ -0.94
SHMT2-235ENST00000557740 C1orf196B1AJZ1 125 aa9.18□□□□□ -0.94
SHMT2-235ENST00000557740 COX7A2LO14548 114 aa9.18□□□□□ -0.94
SHMT2-235ENST00000557740 PPP1R2P9O14990 202 aa9.18□□□□□ -0.94
SHMT2-235ENST00000557740 CAMPP49913 170 aa9.18□□□□□ -0.94
SHMT2-235ENST00000557740 NRACQ8N912 160 aa9.18□□□□□ -0.94
SHMT2-235ENST00000557740 TRAV13-1A0A0B4J241 112 aa9.17□□□□□ -0.94
SHMT2-235ENST00000557740 RPL23P62829 140 aaKnown RBP9.17□□□□□ -0.94
SHMT2-235ENST00000557740 RNASE13Q5GAN3 156 aaKnown RBP9.17□□□□□ -0.94
SHMT2-235ENST00000557740 TMEM18Q96B42 140 aa9.17□□□□□ -0.94
SHMT2-235ENST00000557740 UBE2D4Q9Y2X8 147 aa9.17□□□□□ -0.94
SHMT2-235ENST00000557740 CSDC2Q9Y534 153 aaKnown RBP9.17□□□□□ -0.94
SHMT2-235ENST00000557740 FAM104BQ5XKR9 115 aa9.16□□□□□ -0.94
SHMT2-235ENST00000557740 NAT8Q9UHE5 227 aa9.16□□□□□ -0.94
SHMT2-235ENST00000557740 IGLV4-69A0A075B6H9 119 aa9.15□□□□□ -0.94
SHMT2-235ENST00000557740 LOC107984640A0A0U1RRK4 108 aa9.15□□□□□ -0.94
SHMT2-235ENST00000557740 A0A1B0GW15 77 aa9.15□□□□□ -0.94
SHMT2-235ENST00000557740 MRPL51Q4U2R6 128 aaKnown RBP9.15□□□□□ -0.94
SHMT2-235ENST00000557740 Q6ZUT4 128 aa9.15□□□□□ -0.94
SHMT2-235ENST00000557740 SMIM27A0A1W2PRY6 76 aa9.14□□□□□ -0.95
SHMT2-235ENST00000557740 LINC00862A6NCI5 91 aa9.14□□□□□ -0.95
SHMT2-235ENST00000557740 TCAPO15273 167 aa9.14□□□□□ -0.95
SHMT2-235ENST00000557740 CKS2P33552 79 aa9.14□□□□□ -0.95
SHMT2-235ENST00000557740 PTTG1IPP53801 180 aa9.14□□□□□ -0.95
SHMT2-235ENST00000557740 GAGE2BQ13066 116 aa9.14□□□□□ -0.95
SHMT2-235ENST00000557740 CAMK2N2Q96S95 79 aa9.14□□□□□ -0.95
SHMT2-235ENST00000557740 C20orf78Q9BR46 151 aa9.14□□□□□ -0.95
SHMT2-235ENST00000557740 APOMO95445 188 aa9.13□□□□□ -0.95
SHMT2-235ENST00000557740 TIMM21Q9BVV7 248 aa9.13□□□□□ -0.95
SHMT2-235ENST00000557740 S100A8P05109 93 aa9.12□□□□□ -0.95
SHMT2-235ENST00000557740 RPL32P62910 135 aaKnown RBP9.12□□□□□ -0.95
SHMT2-235ENST00000557740 HBBP68871 147 aa9.12□□□□□ -0.95
SHMT2-235ENST00000557740 PEA15Q15121 130 aa9.12□□□□□ -0.95
SHMT2-235ENST00000557740 Q6ZRP5 223 aa9.12□□□□□ -0.95
SHMT2-235ENST00000557740 C5orf38Q86SI9 138 aa9.12□□□□□ -0.95
SHMT2-235ENST00000557740 C9JQL5 133 aa9.11□□□□□ -0.95
SHMT2-235ENST00000557740 F8W036 122 aa9.11□□□□□ -0.95
SHMT2-235ENST00000557740 TNFRSF6BO95407 300 aa9.11□□□□□ -0.95
SHMT2-235ENST00000557740 RPL18AQ02543 176 aaKnown RBP9.11□□□□□ -0.95
SHMT2-235ENST00000557740 SPAG11BQ08648 103 aa9.11□□□□□ -0.95
SHMT2-235ENST00000557740 MRPL54Q6P161 138 aaKnown RBP9.11□□□□□ -0.95
SHMT2-235ENST00000557740 REG3GQ6UW15 175 aa9.11□□□□□ -0.95
SHMT2-235ENST00000557740 SPINK6Q6UWN8 80 aa9.11□□□□□ -0.95
SHMT2-235ENST00000557740 C2orf48Q96LS8 159 aa9.11□□□□□ -0.95
SHMT2-235ENST00000557740 LINC01600Q96MT4 127 aa9.11□□□□□ -0.95
SHMT2-235ENST00000557740 SMIM2Q9BVW6 85 aa9.11□□□□□ -0.95
SHMT2-235ENST00000557740 TRBV24-1A0A075B6N3 115 aa9.1□□□□□ -0.95
SHMT2-235ENST00000557740 D6R8Y8 96 aa9.1□□□□□ -0.95
SHMT2-235ENST00000557740 RPL39P62891 51 aaKnown RBP9.1□□□□□ -0.95
SHMT2-235ENST00000557740 SRSF3P84103 164 aaKnown RBP9.1□□□□□ -0.95
SHMT2-235ENST00000557740 SPANXA1Q9NS26 97 aa9.1□□□□□ -0.95
SHMT2-235ENST00000557740 UBR4Q5T4S7 5183 aa9.1□□□□□ -0.95
SHMT2-235ENST00000557740 OR10D4PQ8NGN7 298 aa9.09□□□□□ -0.95
SHMT2-235ENST00000557740 SMDT1Q9H4I9 107 aa9.09□□□□□ -0.95
SHMT2-235ENST00000557740 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.08□□□□□ -0.96
SHMT2-235ENST00000557740 NPYP01303 97 aa9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 138.1 ms