RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 COX8AP10176 69 aa8.67□□□□□ -1.02
SHMT2-230ENST00000557427 XGP55808 180 aa8.67□□□□□ -1.02
SHMT2-230ENST00000557427 RHOHQ15669 191 aa8.67□□□□□ -1.02
SHMT2-230ENST00000557427 Q5VSD8 79 aa8.67□□□□□ -1.02
SHMT2-230ENST00000557427 ZFP2Q6ZN57 461 aa8.67□□□□□ -1.02
SHMT2-230ENST00000557427 ERASQ7Z444 233 aa8.67□□□□□ -1.02
SHMT2-230ENST00000557427 RNASE8Q8TDE3 154 aaKnown RBP8.67□□□□□ -1.02
SHMT2-230ENST00000557427 CYSLTR1Q9Y271 337 aa8.67□□□□□ -1.02
SHMT2-230ENST00000557427 GAGE12BA1L429 117 aa8.66□□□□□ -1.02
SHMT2-230ENST00000557427 GAGE7O76087 117 aa8.66□□□□□ -1.02
SHMT2-230ENST00000557427 DPM2O94777 84 aa8.66□□□□□ -1.02
SHMT2-230ENST00000557427 IGKCP01834 107 aa8.66□□□□□ -1.02
SHMT2-230ENST00000557427 ATP5G1P05496 136 aa8.66□□□□□ -1.02
SHMT2-230ENST00000557427 GAGE12FP0CL80 117 aa8.66□□□□□ -1.02
SHMT2-230ENST00000557427 GAGE12GP0CL81 117 aa8.66□□□□□ -1.02
SHMT2-230ENST00000557427 GAGE12IP0CL82 117 aa8.66□□□□□ -1.02
SHMT2-230ENST00000557427 ANKRD39Q53RE8 183 aa8.66□□□□□ -1.02
SHMT2-230ENST00000557427 CFAP126Q5VTH2 177 aa8.65□□□□□ -1.02
SHMT2-230ENST00000557427 NEGR1Q7Z3B1 354 aa8.65□□□□□ -1.02
SHMT2-230ENST00000557427 NEXN-AS1Q8NBZ9 246 aa8.65□□□□□ -1.02
SHMT2-230ENST00000557427 NBDYA0A0U1RRE5 68 aa8.64□□□□□ -1.03
SHMT2-230ENST00000557427 F8VRH5 84 aa8.64□□□□□ -1.03
SHMT2-230ENST00000557427 I3L3M4 83 aa8.64□□□□□ -1.03
SHMT2-230ENST00000557427 DLEU1O43261 78 aa8.64□□□□□ -1.03
SHMT2-230ENST00000557427 PLNP26678 52 aa8.64□□□□□ -1.03
SHMT2-230ENST00000557427 TMEM141Q96I45 108 aa8.64□□□□□ -1.03
SHMT2-230ENST00000557427 DNAJC30Q96LL9 226 aa8.64□□□□□ -1.03
SHMT2-230ENST00000557427 TIMM17AQ99595 171 aa8.64□□□□□ -1.03
SHMT2-230ENST00000557427 MRPL16Q9NX20 251 aaKnown RBP8.64□□□□□ -1.03
SHMT2-230ENST00000557427 HHLA3Q9XRX5 114 aa8.64□□□□□ -1.03
SHMT2-230ENST00000557427 IGIPA6NJ69 53 aa8.63□□□□□ -1.03
SHMT2-230ENST00000557427 TSHBP01222 138 aa8.63□□□□□ -1.03
SHMT2-230ENST00000557427 IGHV3-53P01767 116 aa8.63□□□□□ -1.03
SHMT2-230ENST00000557427 FGF6P10767 208 aa8.63□□□□□ -1.03
SHMT2-230ENST00000557427 Q6ZTI0 123 aa8.63□□□□□ -1.03
SHMT2-230ENST00000557427 STPG4Q8N801 248 aa8.63□□□□□ -1.03
SHMT2-230ENST00000557427 C15orf53Q8NAA6 179 aa8.63□□□□□ -1.03
SHMT2-230ENST00000557427 BAALCQ8WXS3 180 aa8.63□□□□□ -1.03
SHMT2-230ENST00000557427 MRPL35Q9NZE8 188 aaKnown RBP8.63□□□□□ -1.03
SHMT2-230ENST00000557427 A0A0J9YY99 117 aa8.62□□□□□ -1.03
SHMT2-230ENST00000557427 DAZ2Q13117 558 aaKnown RBP8.62□□□□□ -1.03
SHMT2-230ENST00000557427 BOD1L2Q8IYS8 172 aa8.62□□□□□ -1.03
SHMT2-230ENST00000557427 ZNRF2Q8NHG8 242 aa8.62□□□□□ -1.03
SHMT2-230ENST00000557427 CHTOPQ9Y3Y2 248 aaKnown RBP8.62□□□□□ -1.03
SHMT2-230ENST00000557427 TNFRSF18Q9Y5U5 241 aa8.62□□□□□ -1.03
SHMT2-230ENST00000557427 TRGV2A0A075B6R0 118 aa8.61□□□□□ -1.03
SHMT2-230ENST00000557427 TRAV26-1A0A087WT03 109 aa8.61□□□□□ -1.03
SHMT2-230ENST00000557427 TRGV1A0A0A0MS02 117 aa8.61□□□□□ -1.03
SHMT2-230ENST00000557427 J3QL48 77 aa8.61□□□□□ -1.03
SHMT2-230ENST00000557427 SIVA1O15304 175 aa8.61□□□□□ -1.03
SHMT2-230ENST00000557427 LINC00612Q8N6U2 182 aa8.61□□□□□ -1.03
SHMT2-230ENST00000557427 C20orf203Q8NBC4 194 aa8.61□□□□□ -1.03
SHMT2-230ENST00000557427 IGHV3-73A0A0B4J1V6 119 aa8.6□□□□□ -1.03
SHMT2-230ENST00000557427 TRAV4A0A0B4J268 109 aa8.6□□□□□ -1.03
SHMT2-230ENST00000557427 A0A1B0GV90 55 aa8.6□□□□□ -1.03
SHMT2-230ENST00000557427 CIDEAO60543 219 aa8.6□□□□□ -1.03
SHMT2-230ENST00000557427 PMVKQ15126 192 aa8.6□□□□□ -1.03
SHMT2-230ENST00000557427 COL5A1-AS1Q5SY13 56 aa8.6□□□□□ -1.03
SHMT2-230ENST00000557427 Q6ZSN1 163 aa8.6□□□□□ -1.03
SHMT2-230ENST00000557427 FUSP35637 526 aaKnown RBP eCLIP8.59□□□□□ -1.03
SHMT2-230ENST00000557427 RPL39P62891 51 aaKnown RBP8.59□□□□□ -1.03
SHMT2-230ENST00000557427 BATFQ16520 125 aa8.59□□□□□ -1.03
SHMT2-230ENST00000557427 PAPPA-AS1Q5QFB9 102 aa8.59□□□□□ -1.03
SHMT2-230ENST00000557427 ZC2HC1BQ5TFG8 222 aa8.59□□□□□ -1.03
SHMT2-230ENST00000557427 C2orf91Q6ZV80 131 aa8.59□□□□□ -1.03
SHMT2-230ENST00000557427 OR4C5Q8NGB2 326 aa8.59□□□□□ -1.03
SHMT2-230ENST00000557427 TP73-AS1Q9UF72 201 aa8.59□□□□□ -1.03
SHMT2-230ENST00000557427 NPSP0C0P6 89 aa8.58□□□□□ -1.04
SHMT2-230ENST00000557427 NMUP48645 174 aa8.58□□□□□ -1.04
SHMT2-230ENST00000557427 HINT1P49773 126 aaPredicted RBP8.58□□□□□ -1.04
SHMT2-230ENST00000557427 CCL18P55774 89 aa8.58□□□□□ -1.04
SHMT2-230ENST00000557427 IGKV2D-26A0A0A0MRZ7 120 aa8.57□□□□□ -1.04
SHMT2-230ENST00000557427 TRBV10-1A0A0K0K1A3 114 aa8.57□□□□□ -1.04
SHMT2-230ENST00000557427 SMR3BP02814 79 aaPredicted RBP8.57□□□□□ -1.04
SHMT2-230ENST00000557427 KRTAP1-5Q9BYS1 174 aa8.57□□□□□ -1.04
SHMT2-230ENST00000557427 CST9LQ9H4G1 147 aa8.57□□□□□ -1.04
SHMT2-230ENST00000557427 PYGO1Q9Y3Y4 419 aa8.57□□□□□ -1.04
SHMT2-230ENST00000557427 LINC00588Q9Y4M8 146 aa8.57□□□□□ -1.04
SHMT2-230ENST00000557427 CRYBA4P53673 196 aa8.56□□□□□ -1.04
SHMT2-230ENST00000557427 MPV17L2Q567V2 206 aa8.56□□□□□ -1.04
SHMT2-230ENST00000557427 PCP2Q8IVA1 136 aa8.56□□□□□ -1.04
SHMT2-230ENST00000557427 HIGD1BQ9P298 99 aa8.56□□□□□ -1.04
SHMT2-230ENST00000557427 IGLV4-69A0A075B6H9 119 aa8.55□□□□□ -1.04
SHMT2-230ENST00000557427 K7EQD1 137 aa8.55□□□□□ -1.04
SHMT2-230ENST00000557427 ESRGQ1W209 222 aa8.55□□□□□ -1.04
SHMT2-230ENST00000557427 TMEM97Q5BJF2 176 aa8.55□□□□□ -1.04
SHMT2-230ENST00000557427 BVES-AS1Q5T3Y7 98 aa8.55□□□□□ -1.04
SHMT2-230ENST00000557427 DEFB104AQ8WTQ1 72 aa8.55□□□□□ -1.04
SHMT2-230ENST00000557427 VSIG2Q96IQ7 327 aa8.55□□□□□ -1.04
SHMT2-230ENST00000557427 ZNF479Q96JC4 524 aa8.55□□□□□ -1.04
SHMT2-230ENST00000557427 E9PLD3 99 aa8.54□□□□□ -1.04
SHMT2-230ENST00000557427 COTL1Q14019 142 aa8.54□□□□□ -1.04
SHMT2-230ENST00000557427 NFE4Q86UQ8 179 aa8.54□□□□□ -1.04
SHMT2-230ENST00000557427 CHCHD7Q9BUK0 85 aa8.54□□□□□ -1.04
SHMT2-230ENST00000557427 SPANXA1Q9NS26 97 aa8.54□□□□□ -1.04
SHMT2-230ENST00000557427 Q9UF83 564 aa8.54□□□□□ -1.04
SHMT2-230ENST00000557427 IGLV4-3A0A075B6K6 122 aa8.53□□□□□ -1.04
SHMT2-230ENST00000557427 TRBV7-3A0A075B6L6 115 aa8.53□□□□□ -1.04
SHMT2-230ENST00000557427 C11orf86A6NJI1 115 aa8.53□□□□□ -1.04
SHMT2-230ENST00000557427 PAX4O43316 350 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 87.2 ms