RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 J3QLI3 93 aa12.65□□□□□ -0.38
SYNE3-202ENST00000553340 COPS9Q8WXC6 57 aa12.65□□□□□ -0.38
SYNE3-202ENST00000553340 INSP01308 110 aa12.65□□□□□ -0.38
SYNE3-202ENST00000553340 LINC00242Q5T6M2 205 aa12.64□□□□□ -0.39
SYNE3-202ENST00000553340 MAP6D1Q9H9H5 199 aa12.64□□□□□ -0.39
SYNE3-202ENST00000553340 PEMTQ9UBM1 199 aa12.64□□□□□ -0.39
SYNE3-202ENST00000553340 C18orf65Q6ZTR6 163 aa12.64□□□□□ -0.39
SYNE3-202ENST00000553340 ZNF625Q96I27 306 aaPredicted RBP12.64□□□□□ -0.39
SYNE3-202ENST00000553340 CHD8Q9HCK8 2581 aa12.64□□□□□ -0.39
SYNE3-202ENST00000553340 COX7A2LO14548 114 aa12.63□□□□□ -0.39
SYNE3-202ENST00000553340 A0A0U1RRA0 63 aa12.63□□□□□ -0.39
SYNE3-202ENST00000553340 Q6YL49 198 aa12.62□□□□□ -0.39
SYNE3-202ENST00000553340 CELSR2Q9HCU4 2923 aa12.62□□□□□ -0.39
SYNE3-202ENST00000553340 NRGNQ92686 78 aa12.62□□□□□ -0.39
SYNE3-202ENST00000553340 SPTBN4Q9H254 2564 aa12.62□□□□□ -0.39
SYNE3-202ENST00000553340 ACYP1P07311 99 aa12.61□□□□□ -0.39
SYNE3-202ENST00000553340 DYNLRB2Q8TF09 96 aa12.61□□□□□ -0.39
SYNE3-202ENST00000553340 SMIM1B2RUZ4 78 aa12.6□□□□□ -0.39
SYNE3-202ENST00000553340 FAM19A3Q7Z5A8 133 aa12.6□□□□□ -0.39
SYNE3-202ENST00000553340 ITPR1Q14643 2758 aa12.6□□□□□ -0.39
SYNE3-202ENST00000553340 TRBV7-7A0A0K0K1E9 115 aa12.6□□□□□ -0.39
SYNE3-202ENST00000553340 MEIG1Q5JSS6 88 aa12.6□□□□□ -0.39
SYNE3-202ENST00000553340 SHISA2Q6UWI4 295 aa12.6□□□□□ -0.39
SYNE3-202ENST00000553340 LINC00694P0DN24 101 aa12.59□□□□□ -0.39
SYNE3-202ENST00000553340 PRIMA1Q86XR5 153 aa12.59□□□□□ -0.39
SYNE3-202ENST00000553340 SOSTDC1Q6X4U4 206 aa12.59□□□□□ -0.39
SYNE3-202ENST00000553340 MAPK1IP1LQ8NDC0 245 aa12.59□□□□□ -0.39
SYNE3-202ENST00000553340 CSDC2Q9Y534 153 aaKnown RBP12.59□□□□□ -0.39
SYNE3-202ENST00000553340 TRAV13-1A0A0B4J241 112 aa12.58□□□□□ -0.39
SYNE3-202ENST00000553340 NDUFA7O95182 113 aa12.58□□□□□ -0.4
SYNE3-202ENST00000553340 RPL36AP83881 106 aaKnown RBP12.58□□□□□ -0.4
SYNE3-202ENST00000553340 Q8N2B8 174 aa12.58□□□□□ -0.4
SYNE3-202ENST00000553340 RPL36ALQ969Q0 106 aaKnown RBP12.58□□□□□ -0.4
SYNE3-202ENST00000553340 XCL2Q9UBD3 114 aa12.58□□□□□ -0.4
SYNE3-202ENST00000553340 A0A096LNT2 108 aa12.57□□□□□ -0.4
SYNE3-202ENST00000553340 TRGV1A0A0A0MS02 117 aa12.57□□□□□ -0.4
SYNE3-202ENST00000553340 TRACP01848 142 aa12.56□□□□□ -0.4
SYNE3-202ENST00000553340 HERV-K104P63124 156 aa12.56□□□□□ -0.4
SYNE3-202ENST00000553340 DEFB114Q30KQ6 69 aa12.56□□□□□ -0.4
SYNE3-202ENST00000553340 KHDC1LQ5JSQ8 128 aa12.56□□□□□ -0.4
SYNE3-202ENST00000553340 C4orf3Q8WVX3 66 aa12.56□□□□□ -0.4
SYNE3-202ENST00000553340 PIEZO1Q92508 2521 aa12.55□□□□□ -0.4
SYNE3-202ENST00000553340 TRBV10-1A0A0K0K1A3 114 aa12.55□□□□□ -0.4
SYNE3-202ENST00000553340 DAZ2Q13117 558 aaKnown RBP12.55□□□□□ -0.4
SYNE3-202ENST00000553340 DAZ4Q86SG3 579 aaKnown RBP12.55□□□□□ -0.4
SYNE3-202ENST00000553340 DAZ3Q9NR90 486 aaKnown RBP12.55□□□□□ -0.4
SYNE3-202ENST00000553340 FSHBP01225 129 aa12.55□□□□□ -0.4
SYNE3-202ENST00000553340 CHCHD5Q9BSY4 110 aa12.55□□□□□ -0.4
SYNE3-202ENST00000553340 IMUPQ9GZP8 106 aa12.55□□□□□ -0.4
SYNE3-202ENST00000553340 NTM-AS1Q6ZSK4 140 aa12.54□□□□□ -0.4
SYNE3-202ENST00000553340 F5H768 121 aa12.54□□□□□ -0.4
SYNE3-202ENST00000553340 K7EQD1 137 aa12.54□□□□□ -0.4
SYNE3-202ENST00000553340 CDC42SE2Q9NRR3 84 aa12.54□□□□□ -0.4
SYNE3-202ENST00000553340 BAALC-AS2P0C853 105 aa12.53□□□□□ -0.4
SYNE3-202ENST00000553340 IL17DQ8TAD2 202 aa12.53□□□□□ -0.4
SYNE3-202ENST00000553340 PPDPFQ9H3Y8 114 aa12.53□□□□□ -0.4
SYNE3-202ENST00000553340 STHQ8IWL8 128 aa12.52□□□□□ -0.4
SYNE3-202ENST00000553340 C1orf158Q8N1D5 194 aa12.52□□□□□ -0.4
SYNE3-202ENST00000553340 DOPEY1Q5JWR5 2465 aa12.52□□□□□ -0.41
SYNE3-202ENST00000553340 LINC00643Q86TS7 51 aa12.51□□□□□ -0.41
SYNE3-202ENST00000553340 USP9YO00507 2555 aaPredicted RBP12.5□□□□□ -0.41
SYNE3-202ENST00000553340 ODF3L2Q3SX64 289 aa12.5□□□□□ -0.41
SYNE3-202ENST00000553340 HIST2H2BCQ6DN03 193 aa12.5□□□□□ -0.41
SYNE3-202ENST00000553340 HIST2H2BDQ6DRA6 164 aa12.5□□□□□ -0.41
SYNE3-202ENST00000553340 FAM236AA0A1B0GUQ0 79 aa12.49□□□□□ -0.41
SYNE3-202ENST00000553340 FAM236BA0A1B0GV22 79 aa12.49□□□□□ -0.41
SYNE3-202ENST00000553340 PF4P02776 101 aa12.49□□□□□ -0.41
SYNE3-202ENST00000553340 Q6ZTI0 123 aa12.49□□□□□ -0.41
SYNE3-202ENST00000553340 UBE2L6O14933 153 aa12.49□□□□□ -0.41
SYNE3-202ENST00000553340 SMCR5Q8TEV8 140 aa12.49□□□□□ -0.41
SYNE3-202ENST00000553340 FAM218AQ96MZ4 157 aa12.49□□□□□ -0.41
SYNE3-202ENST00000553340 TRAV13-2A0A0B4J235 113 aa12.48□□□□□ -0.41
SYNE3-202ENST00000553340 FAM222AQ5U5X8 452 aa12.48□□□□□ -0.41
SYNE3-202ENST00000553340 Q96MF0 132 aa12.48□□□□□ -0.41
SYNE3-202ENST00000553340 IGHV4-31P0DP07 118 aa12.47□□□□□ -0.41
SYNE3-202ENST00000553340 TMEM243Q9BU79 118 aa12.47□□□□□ -0.41
SYNE3-202ENST00000553340 INAFM2P0DMQ5 153 aa12.47□□□□□ -0.41
SYNE3-202ENST00000553340 ZANQ9Y493 2812 aa12.46□□□□□ -0.41
SYNE3-202ENST00000553340 CRPP02741 224 aa12.46□□□□□ -0.41
SYNE3-202ENST00000553340 RPL28P46779 137 aaKnown RBP12.46□□□□□ -0.41
SYNE3-202ENST00000553340 SDIM1Q6ZPB5 146 aa12.46□□□□□ -0.42
SYNE3-202ENST00000553340 C22orf24Q9Y442 160 aa12.46□□□□□ -0.42
SYNE3-202ENST00000553340 TRAV25A0A0B4J276 109 aa12.45□□□□□ -0.42
SYNE3-202ENST00000553340 ANKRD17O75179 2603 aaKnown RBP12.45□□□□□ -0.42
SYNE3-202ENST00000553340 MXRA5Q9NR99 2828 aa12.45□□□□□ -0.42
SYNE3-202ENST00000553340 USP9XQ93008 2570 aaPredicted RBP12.45□□□□□ -0.42
SYNE3-202ENST00000553340 SMIM20Q8N5G0 67 aa12.44□□□□□ -0.42
SYNE3-202ENST00000553340 FLNCQ14315 2725 aa12.44□□□□□ -0.42
SYNE3-202ENST00000553340 MIR7-3HGQ8N6C7 128 aa12.44□□□□□ -0.42
SYNE3-202ENST00000553340 COX7B2Q8TF08 81 aa12.44□□□□□ -0.42
SYNE3-202ENST00000553340 MALP21145 153 aa12.43□□□□□ -0.42
SYNE3-202ENST00000553340 Q9HAA7 133 aa12.43□□□□□ -0.42
SYNE3-202ENST00000553340 OVOL2Q9BRP0 275 aa12.43□□□□□ -0.42
SYNE3-202ENST00000553340 SND1-IT1Q9HBX3 110 aa12.43□□□□□ -0.42
SYNE3-202ENST00000553340 NOP10Q9NPE3 64 aaKnown RBP12.43□□□□□ -0.42
SYNE3-202ENST00000553340 PKD1L2Q7Z442 2459 aa12.43□□□□□ -0.42
SYNE3-202ENST00000553340 LINC00337Q8N6G1 96 aa12.42□□□□□ -0.42
SYNE3-202ENST00000553340 TMEM126AQ9H061 195 aa12.42□□□□□ -0.42
SYNE3-202ENST00000553340 CFAP46Q8IYW2 2715 aa12.42□□□□□ -0.42
SYNE3-202ENST00000553340 GAGE2AQ6NT46 116 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms