RNA–Protein interactions for RNA: ENST00000553145.1

HDAC4-217, Transcript of histone deacetylase 4, humanhuman

TSL 4

Gene HDAC4, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-217ENST00000553145 TMEM101Q96IK0 257 aa12.16□□□□□ -0.46
HDAC4-217ENST00000553145 DGAT2L7PQ6IED9 249 aa12.15□□□□□ -0.46
HDAC4-217ENST00000553145 CLRN3Q8NCR9 226 aa12.15□□□□□ -0.46
HDAC4-217ENST00000553145 KIR2DL4Q99706 377 aa12.15□□□□□ -0.46
HDAC4-217ENST00000553145 C20orf78Q9BR46 151 aa12.15□□□□□ -0.46
HDAC4-217ENST00000553145 hDV102S1A0JD36 115 aa12.14□□□□□ -0.47
HDAC4-217ENST00000553145 RPL32P62910 135 aaKnown RBP12.14□□□□□ -0.47
HDAC4-217ENST00000553145 UQCC3Q6UW78 93 aa12.14□□□□□ -0.47
HDAC4-217ENST00000553145 SCXQ7RTU7 201 aa12.14□□□□□ -0.47
HDAC4-217ENST00000553145 C15orf56Q8N910 161 aa12.14□□□□□ -0.47
HDAC4-217ENST00000553145 CDC42SE2Q9NRR3 84 aa12.14□□□□□ -0.47
HDAC4-217ENST00000553145 TMEM218A2RU14 115 aa12.13□□□□□ -0.47
HDAC4-217ENST00000553145 C9orf163Q8N9P6 203 aa12.13□□□□□ -0.47
HDAC4-217ENST00000553145 SMIM2Q9BVW6 85 aa12.13□□□□□ -0.47
HDAC4-217ENST00000553145 LINC00959A0A1B0GUT2 108 aa12.12□□□□□ -0.47
HDAC4-217ENST00000553145 SLPIP03973 132 aa12.12□□□□□ -0.47
HDAC4-217ENST00000553145 FOXI1Q12951 378 aa12.12□□□□□ -0.47
HDAC4-217ENST00000553145 ZNF664Q8N3J9 261 aa12.12□□□□□ -0.47
HDAC4-217ENST00000553145 UBE2D4Q9Y2X8 147 aa12.12□□□□□ -0.47
HDAC4-217ENST00000553145 CCL25O15444 150 aa12.11□□□□□ -0.47
HDAC4-217ENST00000553145 PPBPP02775 128 aa12.11□□□□□ -0.47
HDAC4-217ENST00000553145 CNBPP62633 177 aaKnown RBP12.11□□□□□ -0.47
HDAC4-217ENST00000553145 CHAC1Q9BUX1 264 aa12.11□□□□□ -0.47
HDAC4-217ENST00000553145 VPS13BQ7Z7G8 4022 aa12.1□□□□□ -0.47
HDAC4-217ENST00000553145 PHOX2AO14813 284 aa12.1□□□□□ -0.47
HDAC4-217ENST00000553145 XCL1P47992 114 aa12.1□□□□□ -0.47
HDAC4-217ENST00000553145 ORMDL3Q8N138 153 aa12.1□□□□□ -0.47
HDAC4-217ENST00000553145 CIRBP-AS1Q8TBR5 109 aa12.1□□□□□ -0.47
HDAC4-217ENST00000553145 FAM229AH3BQW9 127 aa12.09□□□□□ -0.47
HDAC4-217ENST00000553145 HIGD2BQ4VC39 106 aa12.09□□□□□ -0.47
HDAC4-217ENST00000553145 RNASE13Q5GAN3 156 aaKnown RBP12.09□□□□□ -0.47
HDAC4-217ENST00000553145 TMEM136Q6ZRR5 245 aa12.09□□□□□ -0.47
HDAC4-217ENST00000553145 COMMD7Q86VX2 200 aa12.09□□□□□ -0.47
HDAC4-217ENST00000553145 PRELID3AQ96N28 172 aa12.09□□□□□ -0.47
HDAC4-217ENST00000553145 CSDC2Q9Y534 153 aaKnown RBP12.09□□□□□ -0.47
HDAC4-217ENST00000553145 TCAPO15273 167 aa12.08□□□□□ -0.48
HDAC4-217ENST00000553145 RPL39P62891 51 aaKnown RBP12.08□□□□□ -0.48
HDAC4-217ENST00000553145 Q6ZUT4 128 aa12.08□□□□□ -0.48
HDAC4-217ENST00000553145 LINC00528Q8N1L1 170 aa12.08□□□□□ -0.48
HDAC4-217ENST00000553145 PANO1I0J062 215 aa12.07□□□□□ -0.48
HDAC4-217ENST00000553145 INAFM2P0DMQ5 153 aa12.07□□□□□ -0.48
HDAC4-217ENST00000553145 CFAP161Q6P656 301 aa12.07□□□□□ -0.48
HDAC4-217ENST00000553145 SDIM1Q6ZPB5 146 aa12.07□□□□□ -0.48
HDAC4-217ENST00000553145 TIMM21Q9BVV7 248 aa12.07□□□□□ -0.48
HDAC4-217ENST00000553145 AP5S1Q9NUS5 200 aa12.07□□□□□ -0.48
HDAC4-217ENST00000553145 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12.07□□□□□ -0.48
HDAC4-217ENST00000553145 GVQW2A0A096LPI5 108 aaPredicted RBP12.06□□□□□ -0.48
HDAC4-217ENST00000553145 SS18Q15532 418 aa12.06□□□□□ -0.48
HDAC4-217ENST00000553145 FAM104AQ969W3 186 aa12.06□□□□□ -0.48
HDAC4-217ENST00000553145 TMEM18Q96B42 140 aa12.06□□□□□ -0.48
HDAC4-217ENST00000553145 SEC11CQ9BY50 192 aa12.06□□□□□ -0.48
HDAC4-217ENST00000553145 SMAGPQ0VAQ4 97 aa12.05□□□□□ -0.48
HDAC4-217ENST00000553145 IMMP2LQ96T52 175 aa12.05□□□□□ -0.48
HDAC4-217ENST00000553145 CD164L2Q6UWJ8 174 aa12.04□□□□□ -0.48
HDAC4-217ENST00000553145 CTDSP1Q9GZU7 261 aa12.04□□□□□ -0.48
HDAC4-217ENST00000553145 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.03□□□□□ -0.48
HDAC4-217ENST00000553145 PRSS47A8MTI9 375 aa12.03□□□□□ -0.48
HDAC4-217ENST00000553145 OPRPNQ99935 248 aaPredicted RBP12.03□□□□□ -0.48
HDAC4-217ENST00000553145 LAMTOR2Q9Y2Q5 125 aa12.03□□□□□ -0.48
HDAC4-217ENST00000553145 IGHV3-64A0A075B6Q5 118 aa12.02□□□□□ -0.49
HDAC4-217ENST00000553145 TRAV13-1A0A0B4J241 112 aa12.02□□□□□ -0.49
HDAC4-217ENST00000553145 LOC389332A0A1B0GUA5 103 aa12.02□□□□□ -0.49
HDAC4-217ENST00000553145 MAP1LC3AQ9H492 121 aa12.02□□□□□ -0.49
HDAC4-217ENST00000553145 SPANXA1Q9NS26 97 aa12.02□□□□□ -0.49
HDAC4-217ENST00000553145 IGHV1-58A0A0C4DH39 117 aa12.01□□□□□ -0.49
HDAC4-217ENST00000553145 C1orf196B1AJZ1 125 aa12.01□□□□□ -0.49
HDAC4-217ENST00000553145 C10orf91Q5T1B1 145 aa12.01□□□□□ -0.49
HDAC4-217ENST00000553145 LINC00526Q96FQ7 95 aa12.01□□□□□ -0.49
HDAC4-217ENST00000553145 CHTF8P0CG12 524 aa12□□□□□ -0.49
HDAC4-217ENST00000553145 RAB5AP20339 215 aa12□□□□□ -0.49
HDAC4-217ENST00000553145 CIRBPQ14011 172 aaKnown RBP12□□□□□ -0.49
HDAC4-217ENST00000553145 PLA2G1BP04054 148 aaKnown RBP11.99□□□□□ -0.49
HDAC4-217ENST00000553145 KRTAP10-4P60372 401 aaPredicted RBP11.99□□□□□ -0.49
HDAC4-217ENST00000553145 SRRM2Q9UQ35 2752 aaKnown RBP11.99□□□□□ -0.49
HDAC4-217ENST00000553145 TRAV9-1A0A075B6T8 112 aa11.98□□□□□ -0.49
HDAC4-217ENST00000553145 MRPS36P82909 103 aaKnown RBP11.98□□□□□ -0.49
HDAC4-217ENST00000553145 Q8N8P6 123 aa11.98□□□□□ -0.49
HDAC4-217ENST00000553145 CARHSP1Q9Y2V2 147 aaKnown RBP11.98□□□□□ -0.49
HDAC4-217ENST00000553145 COX7A2LO14548 114 aa11.97□□□□□ -0.49
HDAC4-217ENST00000553145 KIAA1644Q3SXP7 199 aa11.97□□□□□ -0.49
HDAC4-217ENST00000553145 PRSS3P2Q8NHM4 247 aa11.97□□□□□ -0.49
HDAC4-217ENST00000553145 COX6A2Q02221 97 aa11.96□□□□□ -0.49
HDAC4-217ENST00000553145 C5orf38Q86SI9 138 aa11.96□□□□□ -0.49
HDAC4-217ENST00000553145 SPACA4Q8TDM5 124 aa11.96□□□□□ -0.49
HDAC4-217ENST00000553145 IGLV4-3A0A075B6K6 122 aa11.95□□□□□ -0.5
HDAC4-217ENST00000553145 IFI27P40305 119 aaPredicted RBP11.95□□□□□ -0.5
HDAC4-217ENST00000553145 PYGO1Q9Y3Y4 419 aa11.95□□□□□ -0.5
HDAC4-217ENST00000553145 IFITM10A6NMD0 228 aa11.94□□□□□ -0.5
HDAC4-217ENST00000553145 MALP21145 153 aa11.94□□□□□ -0.5
HDAC4-217ENST00000553145 S100PP25815 95 aa11.94□□□□□ -0.5
HDAC4-217ENST00000553145 IGLV4-69A0A075B6H9 119 aa11.93□□□□□ -0.5
HDAC4-217ENST00000553145 A0A087WYN8 130 aa11.93□□□□□ -0.5
HDAC4-217ENST00000553145 ZNF561-AS1K7EIQ3 104 aa11.93□□□□□ -0.5
HDAC4-217ENST00000553145 RHEBQ15382 184 aa11.93□□□□□ -0.5
HDAC4-217ENST00000553145 C2orf66Q6UXQ4 117 aa11.93□□□□□ -0.5
HDAC4-217ENST00000553145 CARD19Q96LW7 228 aa11.93□□□□□ -0.5
HDAC4-217ENST00000553145 RPS10P5Q9NQ39 176 aa11.93□□□□□ -0.5
HDAC4-217ENST00000553145 FLG2Q5D862 2391 aaPredicted RBP11.93□□□□□ -0.5
HDAC4-217ENST00000553145 NXT2Q9NPJ8 142 aaKnown RBP11.92□□□□□ -0.5
HDAC4-217ENST00000553145 CYSLTR1Q9Y271 337 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms