RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 Q86TA4 180 aa6.44□□□□□ -1.38
VPS13D-212ENST00000543766 B4DSR2 109 aa6.44□□□□□ -1.38
VPS13D-212ENST00000543766 C1orf229Q6ZS94 237 aaPredicted RBP6.44□□□□□ -1.38
VPS13D-212ENST00000543766 IGKV1D-37A0A075B6S9 117 aa6.43□□□□□ -1.38
VPS13D-212ENST00000543766 A0A0J9YY99 117 aa6.43□□□□□ -1.38
VPS13D-212ENST00000543766 TRBV30A0A0K0K1B3 111 aa6.43□□□□□ -1.38
VPS13D-212ENST00000543766 ZNF503-AS2A6NEH8 195 aa6.43□□□□□ -1.38
VPS13D-212ENST00000543766 E7EQL1 145 aa6.43□□□□□ -1.38
VPS13D-212ENST00000543766 IGHV3-30P01768 117 aa6.43□□□□□ -1.38
VPS13D-212ENST00000543766 IGHV3-30-5P0DP03 117 aa6.43□□□□□ -1.38
VPS13D-212ENST00000543766 ZNF826PQ6ZT77 177 aa6.43□□□□□ -1.38
VPS13D-212ENST00000543766 ZNF71Q9NQZ8 489 aaPredicted RBP6.43□□□□□ -1.38
VPS13D-212ENST00000543766 RNASE1P07998 156 aaKnown RBP6.43□□□□□ -1.38
VPS13D-212ENST00000543766 KLKP1Q107X0 134 aa6.43□□□□□ -1.38
VPS13D-212ENST00000543766 ZNF580Q9UK33 172 aa6.43□□□□□ -1.38
VPS13D-212ENST00000543766 KMT2BQ9UMN6 2715 aaPredicted RBP6.43□□□□□ -1.38
VPS13D-212ENST00000543766 PRR3P79522 188 aaKnown RBP6.42□□□□□ -1.38
VPS13D-212ENST00000543766 PRCDQ00LT1 54 aa6.42□□□□□ -1.38
VPS13D-212ENST00000543766 DEFB121Q5J5C9 76 aa6.42□□□□□ -1.38
VPS13D-212ENST00000543766 Q6ZRP5 223 aa6.42□□□□□ -1.38
VPS13D-212ENST00000543766 GGNQ86UU5 652 aa6.42□□□□□ -1.38
VPS13D-212ENST00000543766 IMMP1LQ96LU5 166 aa6.42□□□□□ -1.38
VPS13D-212ENST00000543766 SOCS3O14543 225 aa6.42□□□□□ -1.38
VPS13D-212ENST00000543766 C14orf178Q8N769 122 aaPredicted RBP6.42□□□□□ -1.38
VPS13D-212ENST00000543766 TMEM263Q8WUH6 116 aaKnown RBP6.42□□□□□ -1.38
VPS13D-212ENST00000543766 I3L3M4 83 aa6.41□□□□□ -1.38
VPS13D-212ENST00000543766 ZNHIT1O43257 154 aa6.41□□□□□ -1.38
VPS13D-212ENST00000543766 Q75L30 129 aa6.41□□□□□ -1.38
VPS13D-212ENST00000543766 NOTCH2Q04721 2471 aa6.41□□□□□ -1.38
VPS13D-212ENST00000543766 PINLYPA6NC86 204 aa6.41□□□□□ -1.38
VPS13D-212ENST00000543766 FAM218AQ96MZ4 157 aa6.41□□□□□ -1.38
VPS13D-212ENST00000543766 C19orf73Q9NVV2 129 aa6.41□□□□□ -1.38
VPS13D-212ENST00000543766 FAM208BQ5VWN6 2430 aa6.41□□□□□ -1.38
VPS13D-212ENST00000543766 USP24Q9UPU5 2620 aa6.41□□□□□ -1.38
VPS13D-212ENST00000543766 GNRH2O43555 120 aa6.4□□□□□ -1.38
VPS13D-212ENST00000543766 CRIP1P50238 77 aa6.4□□□□□ -1.38
VPS13D-212ENST00000543766 ZNF575Q86XF7 245 aa6.4□□□□□ -1.38
VPS13D-212ENST00000543766 C10orf113Q5VZT2 155 aa6.4□□□□□ -1.38
VPS13D-212ENST00000543766 UBL5Q9BZL1 73 aa6.4□□□□□ -1.38
VPS13D-212ENST00000543766 IGLV2-18A0A075B6J9 118 aa6.4□□□□□ -1.39
VPS13D-212ENST00000543766 ADM2Q7Z4H4 148 aa6.4□□□□□ -1.39
VPS13D-212ENST00000543766 TMEM190Q8WZ59 177 aa6.4□□□□□ -1.39
VPS13D-212ENST00000543766 DEFB126Q9BYW3 111 aa6.4□□□□□ -1.39
VPS13D-212ENST00000543766 KALRNO60229 2985 aa6.4□□□□□ -1.39
VPS13D-212ENST00000543766 IBA57-AS1B1ANH7 110 aa6.39□□□□□ -1.39
VPS13D-212ENST00000543766 KIAA0087Q14695 138 aa6.39□□□□□ -1.39
VPS13D-212ENST00000543766 C9orf116Q5BN46 136 aaPredicted RBP6.39□□□□□ -1.39
VPS13D-212ENST00000543766 KLF14Q8TD94 323 aaPredicted RBP6.39□□□□□ -1.39
VPS13D-212ENST00000543766 CHCHD10Q8WYQ3 142 aaPredicted RBP6.39□□□□□ -1.39
VPS13D-212ENST00000543766 PKDREJQ9NTG1 2253 aa6.39□□□□□ -1.39
VPS13D-212ENST00000543766 RPL39P5Q59GN2 51 aa6.38□□□□□ -1.39
VPS13D-212ENST00000543766 TMEM254Q8TBM7 123 aa6.38□□□□□ -1.39
VPS13D-212ENST00000543766 RNF185Q96GF1 192 aa6.38□□□□□ -1.39
VPS13D-212ENST00000543766 PRRC2AP48634 2157 aaKnown RBP6.38□□□□□ -1.39
VPS13D-212ENST00000543766 IGHV3OR16-13A0A075B7E8 117 aa6.38□□□□□ -1.39
VPS13D-212ENST00000543766 IGHV3-43A0A0B4J1X8 118 aa6.38□□□□□ -1.39
VPS13D-212ENST00000543766 IGHV3-43DP0DP04 118 aa6.38□□□□□ -1.39
VPS13D-212ENST00000543766 IGKV3D-15A0A087WSY6 115 aa6.38□□□□□ -1.39
VPS13D-212ENST00000543766 A6NN06 94 aa6.38□□□□□ -1.39
VPS13D-212ENST00000543766 FSHBP01225 129 aa6.38□□□□□ -1.39
VPS13D-212ENST00000543766 IGHV3-13P01766 116 aa6.38□□□□□ -1.39
VPS13D-212ENST00000543766 COX6B1P14854 86 aa6.37□□□□□ -1.39
VPS13D-212ENST00000543766 Q1T7F1 81 aa6.37□□□□□ -1.39
VPS13D-212ENST00000543766 C1orf134Q5TEV5 83 aa6.37□□□□□ -1.39
VPS13D-212ENST00000543766 DEFB104AQ8WTQ1 72 aa6.37□□□□□ -1.39
VPS13D-212ENST00000543766 KLLNB2CW77 178 aa6.37□□□□□ -1.39
VPS13D-212ENST00000543766 FOLR3P41439 243 aa6.37□□□□□ -1.39
VPS13D-212ENST00000543766 Q0VFX4 171 aa6.37□□□□□ -1.39
VPS13D-212ENST00000543766 BBC3Q96PG8 261 aaPredicted RBP6.37□□□□□ -1.39
VPS13D-212ENST00000543766 DEFB108AA8MXU0 73 aa6.37□□□□□ -1.39
VPS13D-212ENST00000543766 TNP2Q05952 138 aa6.37□□□□□ -1.39
VPS13D-212ENST00000543766 CGB3P0DN86 165 aa6.36□□□□□ -1.39
VPS13D-212ENST00000543766 CGB7P0DN87 165 aa6.36□□□□□ -1.39
VPS13D-212ENST00000543766 LYZL1Q6UWQ5 148 aa6.36□□□□□ -1.39
VPS13D-212ENST00000543766 MRPL36Q9P0J6 103 aaKnown RBP6.36□□□□□ -1.39
VPS13D-212ENST00000543766 CCL3P10147 92 aa6.36□□□□□ -1.39
VPS13D-212ENST00000543766 CNFNQ9BYD5 112 aa6.36□□□□□ -1.39
VPS13D-212ENST00000543766 NDUFA4L2Q9NRX3 87 aa6.36□□□□□ -1.39
VPS13D-212ENST00000543766 TRAV10A0A0B4J240 114 aa6.35□□□□□ -1.39
VPS13D-212ENST00000543766 IGHV1-69P01742 117 aa6.35□□□□□ -1.39
VPS13D-212ENST00000543766 CMC4P56277 68 aaPredicted RBP6.35□□□□□ -1.39
VPS13D-212ENST00000543766 SPANXN1Q5VSR9 72 aa6.35□□□□□ -1.39
VPS13D-212ENST00000543766 TMEM14CQ9P0S9 112 aa6.35□□□□□ -1.39
VPS13D-212ENST00000543766 IGHV4-31P0DP07 118 aa6.35□□□□□ -1.39
VPS13D-212ENST00000543766 CCL4P13236 92 aa6.35□□□□□ -1.39
VPS13D-212ENST00000543766 IGHV3OR16-10A0A075B7F0 116 aa6.34□□□□□ -1.39
VPS13D-212ENST00000543766 K7EQG2 157 aa6.34□□□□□ -1.39
VPS13D-212ENST00000543766 TLN1Q9Y490 2541 aaKnown RBP6.34□□□□□ -1.39
VPS13D-212ENST00000543766 IGHV3-9P01782 118 aa6.34□□□□□ -1.39
VPS13D-212ENST00000543766 IGHV1-3A0A0C4DH29 117 aa6.34□□□□□ -1.4
VPS13D-212ENST00000543766 EIF4EBP3O60516 100 aaPredicted RBP6.34□□□□□ -1.4
VPS13D-212ENST00000543766 GAS8-AS1O95177 125 aa6.34□□□□□ -1.4
VPS13D-212ENST00000543766 SPTBN1Q01082 2364 aaKnown RBP6.33□□□□□ -1.4
VPS13D-212ENST00000543766 VMO1Q7Z5L0 202 aa6.33□□□□□ -1.4
VPS13D-212ENST00000543766 LINC00528Q8N1L1 170 aa6.33□□□□□ -1.4
VPS13D-212ENST00000543766 SAA2P0DJI9 122 aaPredicted RBP6.33□□□□□ -1.4
VPS13D-212ENST00000543766 C19orf84I3L1E1 186 aa6.32□□□□□ -1.4
VPS13D-212ENST00000543766 CASC2Q6XLA1 102 aa6.32□□□□□ -1.4
VPS13D-212ENST00000543766 CENPEQ02224 2701 aa6.32□□□□□ -1.4
VPS13D-212ENST00000543766 C1orf64Q8NEQ6 169 aa6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 69 ms