RNA–Protein interactions for RNA: ENST00000539661.5

RAB40C-205, Transcript of RAB40C, member RAS oncogene family, humanhuman

APPRIS P1 TSL 3 BASIC

Gene RAB40C, Length 2,609 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-205ENST00000539661 LINC00467Q9BRT7 94 aa12.78□□□□□ -0.36
RAB40C-205ENST00000539661 TRACP01848 142 aa12.77□□□□□ -0.36
RAB40C-205ENST00000539661 RBMY1A1P0DJD3 496 aaKnown RBP12.77□□□□□ -0.36
RAB40C-205ENST00000539661 RBMY1CP0DJD4 496 aa12.77□□□□□ -0.36
RAB40C-205ENST00000539661 RBMY1FQ15415 496 aaKnown RBP12.77□□□□□ -0.36
RAB40C-205ENST00000539661 SDIM1Q6ZPB5 146 aa12.77□□□□□ -0.36
RAB40C-205ENST00000539661 DAND5Q8N907 189 aa12.77□□□□□ -0.36
RAB40C-205ENST00000539661 PIMREGQ9BSJ6 248 aa12.77□□□□□ -0.36
RAB40C-205ENST00000539661 IGLV5-39A0A0G2JS06 123 aa12.77□□□□□ -0.37
RAB40C-205ENST00000539661 ANKRD17O75179 2603 aaKnown RBP12.76□□□□□ -0.37
RAB40C-205ENST00000539661 PPDPFQ9H3Y8 114 aa12.76□□□□□ -0.37
RAB40C-205ENST00000539661 IGHV4-61A0A0C4DH41 118 aa12.75□□□□□ -0.37
RAB40C-205ENST00000539661 A8MTW9 85 aa12.75□□□□□ -0.37
RAB40C-205ENST00000539661 HERVK_113P63121 156 aa12.75□□□□□ -0.37
RAB40C-205ENST00000539661 ZNF415Q09FC8 603 aa12.75□□□□□ -0.37
RAB40C-205ENST00000539661 DUX5Q96PT3 197 aa12.75□□□□□ -0.37
RAB40C-205ENST00000539661 IGHV3-53P01767 116 aa12.74□□□□□ -0.37
RAB40C-205ENST00000539661 CXCL5P42830 114 aa12.74□□□□□ -0.37
RAB40C-205ENST00000539661 Q6ZSN1 163 aa12.74□□□□□ -0.37
RAB40C-205ENST00000539661 FAM19A3Q7Z5A8 133 aa12.74□□□□□ -0.37
RAB40C-205ENST00000539661 Q9H8V8 135 aa12.74□□□□□ -0.37
RAB40C-205ENST00000539661 TEX15Q9BXT5 2789 aa12.74□□□□□ -0.37
RAB40C-205ENST00000539661 FAM222AQ5U5X8 452 aa12.74□□□□□ -0.37
RAB40C-205ENST00000539661 PEMTQ9UBM1 199 aa12.74□□□□□ -0.37
RAB40C-205ENST00000539661 BEAN1Q3B7T3 259 aa12.73□□□□□ -0.37
RAB40C-205ENST00000539661 KNCNA6PVL3 124 aa12.73□□□□□ -0.37
RAB40C-205ENST00000539661 C3orf22Q8N5N4 141 aa12.73□□□□□ -0.37
RAB40C-205ENST00000539661 SMCR5Q8TEV8 140 aa12.73□□□□□ -0.37
RAB40C-205ENST00000539661 Q9UF83 564 aa12.73□□□□□ -0.37
RAB40C-205ENST00000539661 HTN1P15515 57 aa12.72□□□□□ -0.37
RAB40C-205ENST00000539661 DAZ2Q13117 558 aaKnown RBP12.72□□□□□ -0.37
RAB40C-205ENST00000539661 DGAT2L7PQ6IED9 249 aa12.72□□□□□ -0.37
RAB40C-205ENST00000539661 DAZ4Q86SG3 579 aaKnown RBP12.72□□□□□ -0.37
RAB40C-205ENST00000539661 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP12.72□□□□□ -0.37
RAB40C-205ENST00000539661 DAZ3Q9NR90 486 aaKnown RBP12.72□□□□□ -0.37
RAB40C-205ENST00000539661 NACAE9PAV3 2078 aa12.72□□□□□ -0.37
RAB40C-205ENST00000539661 UQCRQO14949 82 aa12.72□□□□□ -0.37
RAB40C-205ENST00000539661 SYNJ2BPP57105 145 aa12.72□□□□□ -0.37
RAB40C-205ENST00000539661 BAALC-AS2P0C853 105 aa12.71□□□□□ -0.38
RAB40C-205ENST00000539661 INAFM2P0DMQ5 153 aa12.71□□□□□ -0.38
RAB40C-205ENST00000539661 C10orf105Q8TEF2 133 aa12.71□□□□□ -0.38
RAB40C-205ENST00000539661 COX6A2Q02221 97 aa12.7□□□□□ -0.38
RAB40C-205ENST00000539661 IGHV3OR16-12A0A075B7B8 117 aa12.7□□□□□ -0.38
RAB40C-205ENST00000539661 LINC00242Q5T6M2 205 aa12.7□□□□□ -0.38
RAB40C-205ENST00000539661 C5orf38Q86SI9 138 aa12.7□□□□□ -0.38
RAB40C-205ENST00000539661 SONP18583 2426 aaKnown RBP12.69□□□□□ -0.38
RAB40C-205ENST00000539661 C9orf153Q5TBE3 101 aa12.69□□□□□ -0.38
RAB40C-205ENST00000539661 SOSTDC1Q6X4U4 206 aa12.69□□□□□ -0.38
RAB40C-205ENST00000539661 CCDC168Q8NDH2 2452 aa12.69□□□□□ -0.38
RAB40C-205ENST00000539661 Q8N2B8 174 aa12.69□□□□□ -0.38
RAB40C-205ENST00000539661 LINC00526Q96FQ7 95 aa12.69□□□□□ -0.38
RAB40C-205ENST00000539661 NF1P21359 2839 aa12.69□□□□□ -0.38
RAB40C-205ENST00000539661 IGHV3-38A0A0C4DH36 116 aa12.68□□□□□ -0.38
RAB40C-205ENST00000539661 MSMBP08118 114 aa12.68□□□□□ -0.38
RAB40C-205ENST00000539661 SMIM1B2RUZ4 78 aa12.68□□□□□ -0.38
RAB40C-205ENST00000539661 RS1O15537 224 aa12.68□□□□□ -0.38
RAB40C-205ENST00000539661 NDUFA7O95182 113 aa12.68□□□□□ -0.38
RAB40C-205ENST00000539661 ZNF625Q96I27 306 aaPredicted RBP12.68□□□□□ -0.38
RAB40C-205ENST00000539661 PF4P02776 101 aa12.67□□□□□ -0.38
RAB40C-205ENST00000539661 C10orf99Q6UWK7 81 aa12.67□□□□□ -0.38
RAB40C-205ENST00000539661 VPREB3Q9UKI3 123 aa12.67□□□□□ -0.38
RAB40C-205ENST00000539661 CSDC2Q9Y534 153 aaKnown RBP12.67□□□□□ -0.38
RAB40C-205ENST00000539661 NAV2Q8IVL1 2488 aa12.67□□□□□ -0.38
RAB40C-205ENST00000539661 DEFB131AP59861 70 aa12.66□□□□□ -0.38
RAB40C-205ENST00000539661 C11orf72Q8NBR9 251 aa12.66□□□□□ -0.38
RAB40C-205ENST00000539661 C22orf24Q9Y442 160 aa12.66□□□□□ -0.38
RAB40C-205ENST00000539661 SETD2Q9BYW2 2564 aaPredicted RBP12.66□□□□□ -0.38
RAB40C-205ENST00000539661 CHD6Q8TD26 2715 aa12.66□□□□□ -0.38
RAB40C-205ENST00000539661 HOXD3P31249 432 aaPredicted RBP12.66□□□□□ -0.38
RAB40C-205ENST00000539661 PRIMA1Q86XR5 153 aa12.66□□□□□ -0.38
RAB40C-205ENST00000539661 MAPK1IP1LQ8NDC0 245 aa12.66□□□□□ -0.38
RAB40C-205ENST00000539661 RBMY1BA6NDE4 496 aaKnown RBP12.65□□□□□ -0.38
RAB40C-205ENST00000539661 RBMY1EA6NEQ0 496 aaKnown RBP12.65□□□□□ -0.38
RAB40C-205ENST00000539661 RBMY1DP0C7P1 496 aaKnown RBP12.65□□□□□ -0.38
RAB40C-205ENST00000539661 C3orf56Q8N813 242 aa12.65□□□□□ -0.38
RAB40C-205ENST00000539661 HIST2H2BCQ6DN03 193 aa12.64□□□□□ -0.39
RAB40C-205ENST00000539661 HIST2H2BDQ6DRA6 164 aa12.64□□□□□ -0.39
RAB40C-205ENST00000539661 BBC3Q96PG8 261 aaPredicted RBP12.64□□□□□ -0.39
RAB40C-205ENST00000539661 OVOL2Q9BRP0 275 aa12.64□□□□□ -0.39
RAB40C-205ENST00000539661 A0A0U1RRA0 63 aa12.64□□□□□ -0.39
RAB40C-205ENST00000539661 TENM4Q6N022 2769 aa12.64□□□□□ -0.39
RAB40C-205ENST00000539661 TRAV13-2A0A0B4J235 113 aa12.63□□□□□ -0.39
RAB40C-205ENST00000539661 RPL28P46779 137 aaKnown RBP12.63□□□□□ -0.39
RAB40C-205ENST00000539661 UBE2E2Q96LR5 201 aa12.63□□□□□ -0.39
RAB40C-205ENST00000539661 APCP25054 2843 aa12.62□□□□□ -0.39
RAB40C-205ENST00000539661 PRM2P04554 102 aa12.62□□□□□ -0.39
RAB40C-205ENST00000539661 COX7CP15954 63 aa12.62□□□□□ -0.39
RAB40C-205ENST00000539661 FAM218AQ96MZ4 157 aa12.62□□□□□ -0.39
RAB40C-205ENST00000539661 UBR5O95071 2799 aaPredicted RBP12.62□□□□□ -0.39
RAB40C-205ENST00000539661 IGHV4-59P01825 116 aa12.62□□□□□ -0.39
RAB40C-205ENST00000539661 MALP21145 153 aa12.62□□□□□ -0.39
RAB40C-205ENST00000539661 HIST1H4AP62805 103 aaKnown RBP12.61□□□□□ -0.39
RAB40C-205ENST00000539661 MYO9AB2RTY4 2548 aa12.61□□□□□ -0.39
RAB40C-205ENST00000539661 F5H768 121 aa12.61□□□□□ -0.39
RAB40C-205ENST00000539661 AVPP01185 164 aa12.61□□□□□ -0.39
RAB40C-205ENST00000539661 CCL19Q99731 98 aa12.61□□□□□ -0.39
RAB40C-205ENST00000539661 AKAP9Q99996 3911 aa12.61□□□□□ -0.39
RAB40C-205ENST00000539661 IGHV4-30-2A0A087WSY4 118 aa12.6□□□□□ -0.39
RAB40C-205ENST00000539661 B4DSR2 109 aa12.6□□□□□ -0.39
RAB40C-205ENST00000539661 ATOX1O00244 68 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms