RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 C7orf77A4D0Y5 90 aa7.46□□□□□ -1.22
RTN3-209ENST00000538995 VCYO14598 125 aa7.46□□□□□ -1.22
RTN3-209ENST00000538995 PPP1R2P9O14990 202 aa7.46□□□□□ -1.22
RTN3-209ENST00000538995 S100A8P05109 93 aa7.46□□□□□ -1.22
RTN3-209ENST00000538995 FAM104BQ5XKR9 115 aa7.46□□□□□ -1.22
RTN3-209ENST00000538995 NRACQ8N912 160 aa7.46□□□□□ -1.22
RTN3-209ENST00000538995 OR5A1Q8NGJ0 315 aa7.46□□□□□ -1.22
RTN3-209ENST00000538995 CHCHD10Q8WYQ3 142 aaPredicted RBP7.46□□□□□ -1.22
RTN3-209ENST00000538995 IGKV3OR2-268A0A0C4DH90 116 aa7.45□□□□□ -1.22
RTN3-209ENST00000538995 LINC00862A6NCI5 91 aa7.45□□□□□ -1.22
RTN3-209ENST00000538995 GAGE12HA6NDE8 117 aa7.45□□□□□ -1.22
RTN3-209ENST00000538995 SUMO2P61956 95 aaKnown RBP7.45□□□□□ -1.22
RTN3-209ENST00000538995 SMAGPQ0VAQ4 97 aa7.45□□□□□ -1.22
RTN3-209ENST00000538995 C4orf48Q5BLP8 95 aa7.45□□□□□ -1.22
RTN3-209ENST00000538995 KIR2DL4Q99706 377 aa7.45□□□□□ -1.22
RTN3-209ENST00000538995 SMKR1H3BMG3 65 aa7.44□□□□□ -1.22
RTN3-209ENST00000538995 FCER1GP30273 86 aa7.44□□□□□ -1.22
RTN3-209ENST00000538995 RPL32P62910 135 aaKnown RBP7.44□□□□□ -1.22
RTN3-209ENST00000538995 HBBP68871 147 aa7.44□□□□□ -1.22
RTN3-209ENST00000538995 MRPL51Q4U2R6 128 aaKnown RBP7.44□□□□□ -1.22
RTN3-209ENST00000538995 SDIM1Q6ZPB5 146 aa7.44□□□□□ -1.22
RTN3-209ENST00000538995 C15orf56Q8N910 161 aa7.44□□□□□ -1.22
RTN3-209ENST00000538995 C20orf78Q9BR46 151 aa7.44□□□□□ -1.22
RTN3-209ENST00000538995 TRBV24-1A0A075B6N3 115 aa7.43□□□□□ -1.22
RTN3-209ENST00000538995 IGHV3-64A0A075B6Q5 118 aa7.43□□□□□ -1.22
RTN3-209ENST00000538995 GVQW2A0A096LPI5 108 aaPredicted RBP7.43□□□□□ -1.22
RTN3-209ENST00000538995 A0A1B0GXF2 115 aa7.43□□□□□ -1.22
RTN3-209ENST00000538995 F8W036 122 aa7.43□□□□□ -1.22
RTN3-209ENST00000538995 TCAPO15273 167 aa7.43□□□□□ -1.22
RTN3-209ENST00000538995 CAMPP49913 170 aa7.43□□□□□ -1.22
RTN3-209ENST00000538995 RAB14P61106 215 aa7.43□□□□□ -1.22
RTN3-209ENST00000538995 FOXI1Q12951 378 aa7.43□□□□□ -1.22
RTN3-209ENST00000538995 CIRBPQ14011 172 aaKnown RBP7.43□□□□□ -1.22
RTN3-209ENST00000538995 NDUFA5Q16718 116 aa7.43□□□□□ -1.22
RTN3-209ENST00000538995 CDC42SE2Q9NRR3 84 aa7.43□□□□□ -1.22
RTN3-209ENST00000538995 CSDC2Q9Y534 153 aaKnown RBP7.43□□□□□ -1.22
RTN3-209ENST00000538995 LINC00959A0A1B0GUT2 108 aa7.42□□□□□ -1.22
RTN3-209ENST00000538995 PNRC1Q12796 327 aaPredicted RBP7.42□□□□□ -1.22
RTN3-209ENST00000538995 ATP5L2Q7Z4Y8 100 aa7.42□□□□□ -1.22
RTN3-209ENST00000538995 ZNF664Q8N3J9 261 aa7.42□□□□□ -1.22
RTN3-209ENST00000538995 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.42□□□□□ -1.22
RTN3-209ENST00000538995 PHOX2AO14813 284 aa7.41□□□□□ -1.22
RTN3-209ENST00000538995 CCL25O15444 150 aa7.41□□□□□ -1.22
RTN3-209ENST00000538995 PPBPP02775 128 aa7.41□□□□□ -1.22
RTN3-209ENST00000538995 SLPIP03973 132 aa7.41□□□□□ -1.22
RTN3-209ENST00000538995 CKS2P33552 79 aa7.41□□□□□ -1.22
RTN3-209ENST00000538995 XCL1P47992 114 aa7.41□□□□□ -1.22
RTN3-209ENST00000538995 KRTAP10-4P60372 401 aaPredicted RBP7.41□□□□□ -1.22
RTN3-209ENST00000538995 SS18Q15532 418 aa7.41□□□□□ -1.22
RTN3-209ENST00000538995 MRPL54Q6P161 138 aaKnown RBP7.41□□□□□ -1.22
RTN3-209ENST00000538995 TMEM18Q96B42 140 aa7.41□□□□□ -1.22
RTN3-209ENST00000538995 TNFRSF6BO95407 300 aa7.4□□□□□ -1.22
RTN3-209ENST00000538995 CD164L2Q6UWJ8 174 aa7.4□□□□□ -1.22
RTN3-209ENST00000538995 TIMM21Q9BVV7 248 aa7.4□□□□□ -1.22
RTN3-209ENST00000538995 SMIM2Q9BVW6 85 aa7.4□□□□□ -1.22
RTN3-209ENST00000538995 UBE2D4Q9Y2X8 147 aa7.4□□□□□ -1.22
RTN3-209ENST00000538995 IGHV1-58A0A0C4DH39 117 aa7.39□□□□□ -1.23
RTN3-209ENST00000538995 D6R8Y8 96 aa7.39□□□□□ -1.23
RTN3-209ENST00000538995 PANO1I0J062 215 aa7.39□□□□□ -1.23
RTN3-209ENST00000538995 HIGD2BQ4VC39 106 aa7.39□□□□□ -1.23
RTN3-209ENST00000538995 ANAPC16Q96DE5 110 aa7.39□□□□□ -1.23
RTN3-209ENST00000538995 PKIGQ9Y2B9 76 aa7.39□□□□□ -1.23
RTN3-209ENST00000538995 C1orf196B1AJZ1 125 aa7.38□□□□□ -1.23
RTN3-209ENST00000538995 MT-ND4LP03901 98 aa7.38□□□□□ -1.23
RTN3-209ENST00000538995 LORP23490 312 aaPredicted RBP7.38□□□□□ -1.23
RTN3-209ENST00000538995 RPL37AP61513 92 aaKnown RBP7.38□□□□□ -1.23
RTN3-209ENST00000538995 CLLU1Q5K131 121 aa7.38□□□□□ -1.23
RTN3-209ENST00000538995 SPACA4Q8TDM5 124 aa7.38□□□□□ -1.23
RTN3-209ENST00000538995 KRTAP29-1A8MX34 341 aaPredicted RBP7.37□□□□□ -1.23
RTN3-209ENST00000538995 NPYP01303 97 aa7.37□□□□□ -1.23
RTN3-209ENST00000538995 ORMDL3Q8N138 153 aa7.37□□□□□ -1.23
RTN3-209ENST00000538995 SPANXA1Q9NS26 97 aa7.37□□□□□ -1.23
RTN3-209ENST00000538995 Q6ZUT4 128 aa7.36□□□□□ -1.23
RTN3-209ENST00000538995 LAMTOR2Q9Y2Q5 125 aa7.36□□□□□ -1.23
RTN3-209ENST00000538995 A0A087WYN8 130 aa7.35□□□□□ -1.23
RTN3-209ENST00000538995 J3QL48 77 aa7.35□□□□□ -1.23
RTN3-209ENST00000538995 COX7A2LO14548 114 aa7.35□□□□□ -1.23
RTN3-209ENST00000538995 CHTF8P0CG12 524 aa7.35□□□□□ -1.23
RTN3-209ENST00000538995 CTAG1AP78358 180 aa7.35□□□□□ -1.23
RTN3-209ENST00000538995 MRPS36P82909 103 aaKnown RBP7.35□□□□□ -1.23
RTN3-209ENST00000538995 COX6A2Q02221 97 aa7.35□□□□□ -1.23
RTN3-209ENST00000538995 TMEM136Q6ZRR5 245 aa7.35□□□□□ -1.23
RTN3-209ENST00000538995 CARD19Q96LW7 228 aa7.35□□□□□ -1.23
RTN3-209ENST00000538995 PRELID3AQ96N28 172 aa7.35□□□□□ -1.23
RTN3-209ENST00000538995 PLAC8Q9NZF1 115 aa7.35□□□□□ -1.23
RTN3-209ENST00000538995 LINC00474Q9P2X8 69 aa7.35□□□□□ -1.23
RTN3-209ENST00000538995 PKHD1L1Q86WI1 4243 aa7.35□□□□□ -1.23
RTN3-209ENST00000538995 TRAV13-1A0A0B4J241 112 aa7.34□□□□□ -1.23
RTN3-209ENST00000538995 ZNF561-AS1K7EIQ3 104 aa7.34□□□□□ -1.23
RTN3-209ENST00000538995 MALP21145 153 aa7.34□□□□□ -1.23
RTN3-209ENST00000538995 UQCC3Q6UW78 93 aa7.34□□□□□ -1.23
RTN3-209ENST00000538995 SLC7A5P1Q8MH63 180 aa7.34□□□□□ -1.23
RTN3-209ENST00000538995 DPH3Q96FX2 82 aa7.34□□□□□ -1.23
RTN3-209ENST00000538995 PRSS47A8MTI9 375 aa7.33□□□□□ -1.24
RTN3-209ENST00000538995 OXTP01178 125 aa7.33□□□□□ -1.24
RTN3-209ENST00000538995 RAB5AP20339 215 aa7.33□□□□□ -1.24
RTN3-209ENST00000538995 RPL39P62891 51 aaKnown RBP7.33□□□□□ -1.24
RTN3-209ENST00000538995 RNASE13Q5GAN3 156 aaKnown RBP7.33□□□□□ -1.24
RTN3-209ENST00000538995 PRSS3P2Q8NHM4 247 aa7.33□□□□□ -1.24
RTN3-209ENST00000538995 IMMP2LQ96T52 175 aa7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms