RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 SMIM20Q8N5G0 67 aa9.52□□□□□ -0.89
LDLR-203ENST00000535915 ESM1Q9NQ30 184 aa9.52□□□□□ -0.89
LDLR-203ENST00000535915 TRAV8-3A0A0A6YYJ7 113 aa9.51□□□□□ -0.89
LDLR-203ENST00000535915 ADARB2-AS1A8MUL3 147 aa9.51□□□□□ -0.89
LDLR-203ENST00000535915 NOTCH3Q9UM47 2321 aa9.5□□□□□ -0.89
LDLR-203ENST00000535915 A0A0J9YXY3 114 aa9.5□□□□□ -0.89
LDLR-203ENST00000535915 TMEM262E9PQX1 116 aa9.5□□□□□ -0.89
LDLR-203ENST00000535915 MUSTN1Q8IVN3 82 aa9.5□□□□□ -0.89
LDLR-203ENST00000535915 C1orf158Q8N1D5 194 aa9.5□□□□□ -0.89
LDLR-203ENST00000535915 FAM110AQ9BQ89 295 aa9.5□□□□□ -0.89
LDLR-203ENST00000535915 SETXQ7Z333 2677 aaKnown RBP9.49□□□□□ -0.89
LDLR-203ENST00000535915 TRGV1A0A0A0MS02 117 aa9.49□□□□□ -0.89
LDLR-203ENST00000535915 TINCRA0A1B0GVN0 87 aa9.49□□□□□ -0.89
LDLR-203ENST00000535915 TRBV20-1A0A075B6N2 111 aa9.49□□□□□ -0.89
LDLR-203ENST00000535915 IGHV1-58A0A0C4DH39 117 aa9.49□□□□□ -0.89
LDLR-203ENST00000535915 GAGE12JA6NER3 117 aa9.49□□□□□ -0.89
LDLR-203ENST00000535915 GAGE7O76087 117 aa9.49□□□□□ -0.89
LDLR-203ENST00000535915 GAGE12FP0CL80 117 aa9.49□□□□□ -0.89
LDLR-203ENST00000535915 GAGE12GP0CL81 117 aa9.49□□□□□ -0.89
LDLR-203ENST00000535915 GAGE12IP0CL82 117 aa9.49□□□□□ -0.89
LDLR-203ENST00000535915 SCGB1C2P0DMR2 95 aa9.49□□□□□ -0.89
LDLR-203ENST00000535915 GAGE4Q13068 117 aa9.49□□□□□ -0.89
LDLR-203ENST00000535915 HIST2H2BCQ6DN03 193 aa9.49□□□□□ -0.89
LDLR-203ENST00000535915 CITED2Q99967 270 aaPredicted RBP9.49□□□□□ -0.89
LDLR-203ENST00000535915 TCL1BO95988 128 aa9.48□□□□□ -0.89
LDLR-203ENST00000535915 GAGE2BQ13066 116 aa9.48□□□□□ -0.89
LDLR-203ENST00000535915 GAGE2EQ4V326 116 aa9.48□□□□□ -0.89
LDLR-203ENST00000535915 GAGE2DQ9UEU5 116 aa9.48□□□□□ -0.89
LDLR-203ENST00000535915 NHLRC4P0CG21 123 aaPredicted RBP9.48□□□□□ -0.89
LDLR-203ENST00000535915 SNCGO76070 127 aa9.47□□□□□ -0.89
LDLR-203ENST00000535915 TTC32Q5I0X7 151 aa9.47□□□□□ -0.89
LDLR-203ENST00000535915 DGAT2L7PQ6IED9 249 aa9.47□□□□□ -0.89
LDLR-203ENST00000535915 JMJD1CQ15652 2540 aa9.47□□□□□ -0.89
LDLR-203ENST00000535915 ACANP16112 2415 aa9.47□□□□□ -0.89
LDLR-203ENST00000535915 H7C2G1 150 aa9.47□□□□□ -0.89
LDLR-203ENST00000535915 TMEM263Q8WUH6 116 aaKnown RBP9.47□□□□□ -0.89
LDLR-203ENST00000535915 VSIG2Q96IQ7 327 aa9.47□□□□□ -0.89
LDLR-203ENST00000535915 NDUFA12Q9UI09 145 aa9.47□□□□□ -0.89
LDLR-203ENST00000535915 A8MZ25 164 aa9.46□□□□□ -0.89
LDLR-203ENST00000535915 EIF4EBP3O60516 100 aaPredicted RBP9.46□□□□□ -0.89
LDLR-203ENST00000535915 NDUFV3P56181 108 aaKnown RBP9.46□□□□□ -0.89
LDLR-203ENST00000535915 A0A0B4J2C4 111 aa9.46□□□□□ -0.9
LDLR-203ENST00000535915 CCDC179H3BU77 68 aa9.46□□□□□ -0.9
LDLR-203ENST00000535915 PRSS2P07478 247 aa9.46□□□□□ -0.9
LDLR-203ENST00000535915 ANKRD29Q8N6D5 301 aa9.46□□□□□ -0.9
LDLR-203ENST00000535915 IL17DQ8TAD2 202 aa9.46□□□□□ -0.9
LDLR-203ENST00000535915 PDZD2O15018 2839 aa9.46□□□□□ -0.9
LDLR-203ENST00000535915 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.46□□□□□ -0.9
LDLR-203ENST00000535915 IGHV3-33P01772 117 aa9.46□□□□□ -0.9
LDLR-203ENST00000535915 Q6ZTI0 123 aa9.45□□□□□ -0.9
LDLR-203ENST00000535915 LITAFQ99732 161 aa9.45□□□□□ -0.9
LDLR-203ENST00000535915 CITED1Q99966 193 aa9.45□□□□□ -0.9
LDLR-203ENST00000535915 MTORP42345 2549 aa9.44□□□□□ -0.9
LDLR-203ENST00000535915 IFITM1P13164 125 aa9.44□□□□□ -0.9
LDLR-203ENST00000535915 Q1RN00 199 aa9.44□□□□□ -0.9
LDLR-203ENST00000535915 LINC01006Q8NI28 216 aa9.44□□□□□ -0.9
LDLR-203ENST00000535915 YAE1D1Q9NRH1 226 aa9.44□□□□□ -0.9
LDLR-203ENST00000535915 CDKN2A-AS1Q9UH64 79 aa9.44□□□□□ -0.9
LDLR-203ENST00000535915 RPL36AP83881 106 aaKnown RBP9.44□□□□□ -0.9
LDLR-203ENST00000535915 ADAMTSL4-AS1Q5T5F5 129 aa9.44□□□□□ -0.9
LDLR-203ENST00000535915 RPL36ALQ969Q0 106 aaKnown RBP9.44□□□□□ -0.9
LDLR-203ENST00000535915 ITPR2Q14571 2701 aa9.43□□□□□ -0.9
LDLR-203ENST00000535915 K7EQD1 137 aa9.43□□□□□ -0.9
LDLR-203ENST00000535915 TRAV4A0A0B4J268 109 aa9.43□□□□□ -0.9
LDLR-203ENST00000535915 NPC2P61916 151 aa9.42□□□□□ -0.9
LDLR-203ENST00000535915 NOP10Q9NPE3 64 aaKnown RBP9.42□□□□□ -0.9
LDLR-203ENST00000535915 ANK3Q12955 4377 aaKnown RBP9.42□□□□□ -0.9
LDLR-203ENST00000535915 LINC00694P0DN24 101 aa9.42□□□□□ -0.9
LDLR-203ENST00000535915 SPANXDQ9BXN6 97 aa9.42□□□□□ -0.9
LDLR-203ENST00000535915 WFDC10AQ9H1F0 79 aa9.42□□□□□ -0.9
LDLR-203ENST00000535915 SPANXCQ9NY87 97 aa9.42□□□□□ -0.9
LDLR-203ENST00000535915 TRBV10-1A0A0K0K1A3 114 aa9.41□□□□□ -0.9
LDLR-203ENST00000535915 TIRAPP58753 221 aa9.41□□□□□ -0.9
LDLR-203ENST00000535915 KRTAP1-1Q07627 177 aa9.41□□□□□ -0.9
LDLR-203ENST00000535915 RNASE1P07998 156 aaKnown RBP9.41□□□□□ -0.9
LDLR-203ENST00000535915 COX6A2Q02221 97 aa9.41□□□□□ -0.9
LDLR-203ENST00000535915 MIAQ16674 131 aa9.41□□□□□ -0.9
LDLR-203ENST00000535915 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP9.41□□□□□ -0.9
LDLR-203ENST00000535915 RPL35AP18077 110 aaKnown RBP9.41□□□□□ -0.9
LDLR-203ENST00000535915 CMC4P56277 68 aaPredicted RBP9.41□□□□□ -0.9
LDLR-203ENST00000535915 DAZ2Q13117 558 aaKnown RBP9.41□□□□□ -0.9
LDLR-203ENST00000535915 DAZ4Q86SG3 579 aaKnown RBP9.41□□□□□ -0.9
LDLR-203ENST00000535915 SBSPONQ8IVN8 264 aa9.41□□□□□ -0.9
LDLR-203ENST00000535915 TMEM101Q96IK0 257 aa9.41□□□□□ -0.9
LDLR-203ENST00000535915 C16orf95Q9H693 158 aa9.41□□□□□ -0.9
LDLR-203ENST00000535915 DAZ3Q9NR90 486 aaKnown RBP9.41□□□□□ -0.9
LDLR-203ENST00000535915 IGLV5-45A0A087WSX0 123 aa9.4□□□□□ -0.9
LDLR-203ENST00000535915 SLC25A20O43772 301 aa9.4□□□□□ -0.9
LDLR-203ENST00000535915 CRLF1O75462 422 aa9.4□□□□□ -0.9
LDLR-203ENST00000535915 C9JAW5 83 aa9.4□□□□□ -0.91
LDLR-203ENST00000535915 GIG44P09565 113 aaPredicted RBP9.4□□□□□ -0.91
LDLR-203ENST00000535915 HERVK_113P63121 156 aa9.4□□□□□ -0.91
LDLR-203ENST00000535915 NTM-AS1Q6ZSK4 140 aa9.4□□□□□ -0.91
LDLR-203ENST00000535915 NDUFA7O95182 113 aa9.39□□□□□ -0.91
LDLR-203ENST00000535915 C2CD3Q4AC94 2353 aa9.39□□□□□ -0.91
LDLR-203ENST00000535915 LINC00242Q5T6M2 205 aa9.39□□□□□ -0.91
LDLR-203ENST00000535915 TRAV13-1A0A0B4J241 112 aa9.38□□□□□ -0.91
LDLR-203ENST00000535915 IGLV1-51P01701 117 aa9.38□□□□□ -0.91
LDLR-203ENST00000535915 C16orf74Q96GX8 76 aa9.38□□□□□ -0.91
LDLR-203ENST00000535915 TRGV2A0A075B6R0 118 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 98.5 ms