RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 NPFFO15130 113 aa4.84□□□□□ -1.63
USP28-202ENST00000535607 TSHBP01222 138 aa4.84□□□□□ -1.63
USP28-202ENST00000535607 TRACP01848 142 aa4.84□□□□□ -1.63
USP28-202ENST00000535607 PRB4P10163 310 aaPredicted RBP4.84□□□□□ -1.63
USP28-202ENST00000535607 ZNF22P17026 224 aaPredicted RBP4.84□□□□□ -1.63
USP28-202ENST00000535607 CRIP2P52943 208 aaPredicted RBP4.84□□□□□ -1.63
USP28-202ENST00000535607 TSPEAR-AS2P59090 65 aa4.84□□□□□ -1.63
USP28-202ENST00000535607 ECSCRQ19T08 205 aa4.84□□□□□ -1.63
USP28-202ENST00000535607 Q6ZQT7 251 aa4.84□□□□□ -1.63
USP28-202ENST00000535607 C20orf203Q8NBC4 194 aa4.84□□□□□ -1.63
USP28-202ENST00000535607 ZNRF2Q8NHG8 242 aa4.84□□□□□ -1.63
USP28-202ENST00000535607 USMG5Q96IX5 58 aa4.84□□□□□ -1.63
USP28-202ENST00000535607 LINC01587Q99440 93 aa4.84□□□□□ -1.63
USP28-202ENST00000535607 PPDPFQ9H3Y8 114 aa4.84□□□□□ -1.63
USP28-202ENST00000535607 KIF25-AS1Q9Y6Z4 181 aa4.84□□□□□ -1.63
USP28-202ENST00000535607 APCP25054 2843 aa4.83□□□□□ -1.64
USP28-202ENST00000535607 IGHV3-66A0A0C4DH42 116 aa4.83□□□□□ -1.64
USP28-202ENST00000535607 TINCRA0A1B0GVN0 87 aa4.83□□□□□ -1.64
USP28-202ENST00000535607 CLPSL1A2RUU4 121 aa4.83□□□□□ -1.64
USP28-202ENST00000535607 IGHV3-30-3P0DP02 117 aa4.83□□□□□ -1.64
USP28-202ENST00000535607 COX7CP15954 63 aa4.83□□□□□ -1.64
USP28-202ENST00000535607 UBE2E1P51965 193 aa4.83□□□□□ -1.64
USP28-202ENST00000535607 ATP5J2P56134 94 aa4.83□□□□□ -1.64
USP28-202ENST00000535607 TMEM258P61165 79 aa4.83□□□□□ -1.64
USP28-202ENST00000535607 ZNF415Q09FC8 603 aa4.83□□□□□ -1.64
USP28-202ENST00000535607 DEFB113Q30KQ7 82 aa4.83□□□□□ -1.64
USP28-202ENST00000535607 TMEM61Q8N0U2 210 aa4.83□□□□□ -1.64
USP28-202ENST00000535607 Q8N9W7 124 aa4.83□□□□□ -1.64
USP28-202ENST00000535607 FAM19A4Q96LR4 140 aa4.83□□□□□ -1.64
USP28-202ENST00000535607 NDUFA12Q9UI09 145 aa4.83□□□□□ -1.64
USP28-202ENST00000535607 CSDC2Q9Y534 153 aaKnown RBP4.83□□□□□ -1.64
USP28-202ENST00000535607 DOPEY2Q9Y3R5 2298 aa4.83□□□□□ -1.64
USP28-202ENST00000535607 TRAV8-3A0A0A6YYJ7 113 aa4.82□□□□□ -1.64
USP28-202ENST00000535607 IGHV3-35A0A0C4DH35 117 aa4.82□□□□□ -1.64
USP28-202ENST00000535607 COX7A2LO14548 114 aa4.82□□□□□ -1.64
USP28-202ENST00000535607 BRI3O95415 125 aa4.82□□□□□ -1.64
USP28-202ENST00000535607 CD28P10747 220 aa4.82□□□□□ -1.64
USP28-202ENST00000535607 CRYGAP11844 174 aa4.82□□□□□ -1.64
USP28-202ENST00000535607 RNASE3P12724 160 aaKnown RBP4.82□□□□□ -1.64
USP28-202ENST00000535607 RPL39P62891 51 aaKnown RBP4.82□□□□□ -1.64
USP28-202ENST00000535607 HERVK_113P63121 156 aa4.82□□□□□ -1.64
USP28-202ENST00000535607 MRPS36P82909 103 aaKnown RBP4.82□□□□□ -1.64
USP28-202ENST00000535607 NDPQ00604 133 aa4.82□□□□□ -1.64
USP28-202ENST00000535607 S100A7L2Q5SY68 101 aa4.82□□□□□ -1.64
USP28-202ENST00000535607 FAM222AQ5U5X8 452 aa4.82□□□□□ -1.64
USP28-202ENST00000535607 C10orf105Q8TEF2 133 aa4.82□□□□□ -1.64
USP28-202ENST00000535607 DUX3Q96PT4 197 aa4.82□□□□□ -1.64
USP28-202ENST00000535607 ANKRD17O75179 2603 aaKnown RBP4.82□□□□□ -1.64
USP28-202ENST00000535607 ASH1LQ9NR48 2969 aaKnown RBP4.81□□□□□ -1.64
USP28-202ENST00000535607 FASNP49327 2511 aaKnown RBP4.81□□□□□ -1.64
USP28-202ENST00000535607 NAV2Q8IVL1 2488 aa4.81□□□□□ -1.64
USP28-202ENST00000535607 CSMD2Q7Z408 3487 aa4.81□□□□□ -1.64
USP28-202ENST00000535607 IGLV4-3A0A075B6K6 122 aa4.81□□□□□ -1.64
USP28-202ENST00000535607 IGHV3OR16-8A0A075B7F1 116 aa4.81□□□□□ -1.64
USP28-202ENST00000535607 TRAV41A0A0B4J266 112 aa4.81□□□□□ -1.64
USP28-202ENST00000535607 SMIM9A6NGZ8 99 aa4.81□□□□□ -1.64
USP28-202ENST00000535607 KLLNB2CW77 178 aa4.81□□□□□ -1.64
USP28-202ENST00000535607 ATP6V0E1O15342 81 aa4.81□□□□□ -1.64
USP28-202ENST00000535607 GNRH2O43555 120 aa4.81□□□□□ -1.64
USP28-202ENST00000535607 LINC00315P59091 139 aa4.81□□□□□ -1.64
USP28-202ENST00000535607 PRR9Q5T870 116 aa4.81□□□□□ -1.64
USP28-202ENST00000535607 VSIG2Q96IQ7 327 aa4.81□□□□□ -1.64
USP28-202ENST00000535607 BPESC1Q9GZL8 116 aa4.81□□□□□ -1.64
USP28-202ENST00000535607 EDA2RQ9HAV5 297 aa4.81□□□□□ -1.64
USP28-202ENST00000535607 LINC00527Q9UJ94 153 aa4.81□□□□□ -1.64
USP28-202ENST00000535607 PLXNB1O43157 2135 aa4.81□□□□□ -1.64
USP28-202ENST00000535607 A0A0J9YXV3 536 aa4.8□□□□□ -1.64
USP28-202ENST00000535607 LYNX1G3V0Z9 82 aa4.8□□□□□ -1.64
USP28-202ENST00000535607 M0QY20 66 aa4.8□□□□□ -1.64
USP28-202ENST00000535607 NDUFA1O15239 70 aa4.8□□□□□ -1.64
USP28-202ENST00000535607 LY6HO94772 140 aa4.8□□□□□ -1.64
USP28-202ENST00000535607 DNAL4O96015 105 aa4.8□□□□□ -1.64
USP28-202ENST00000535607 LINC00694P0DN24 101 aa4.8□□□□□ -1.64
USP28-202ENST00000535607 LYNX1P0DP58 116 aa4.8□□□□□ -1.64
USP28-202ENST00000535607 FAM74A4Q5TZK3 123 aa4.8□□□□□ -1.64
USP28-202ENST00000535607 C5orf38Q86SI9 138 aa4.8□□□□□ -1.64
USP28-202ENST00000535607 ABCA12Q86UK0 2595 aa4.79□□□□□ -1.64
USP28-202ENST00000535607 IGHV3-64A0A075B6Q5 118 aa4.79□□□□□ -1.64
USP28-202ENST00000535607 IGHV3OR16-13A0A075B7E8 117 aa4.79□□□□□ -1.64
USP28-202ENST00000535607 IGHV3-74A0A0B4J1X5 117 aa4.79□□□□□ -1.64
USP28-202ENST00000535607 TRAV13-2A0A0B4J235 113 aa4.79□□□□□ -1.64
USP28-202ENST00000535607 NDUFC2-KCTD14E9PQ53 114 aa4.79□□□□□ -1.64
USP28-202ENST00000535607 K7EMT4 169 aa4.79□□□□□ -1.64
USP28-202ENST00000535607 SOCS3O14543 225 aa4.79□□□□□ -1.64
USP28-202ENST00000535607 BAALC-AS2P0C853 105 aa4.79□□□□□ -1.64
USP28-202ENST00000535607 KRTAP10-9P60411 292 aa4.79□□□□□ -1.64
USP28-202ENST00000535607 SNRPD3P62318 126 aaKnown RBP4.79□□□□□ -1.64
USP28-202ENST00000535607 RPL36AP83881 106 aaKnown RBP4.79□□□□□ -1.64
USP28-202ENST00000535607 PRB3Q04118 309 aaPredicted RBP4.79□□□□□ -1.64
USP28-202ENST00000535607 SDIM1Q6ZPB5 146 aa4.79□□□□□ -1.64
USP28-202ENST00000535607 Q75L30 129 aa4.79□□□□□ -1.64
USP28-202ENST00000535607 DCANP1Q8TF63 244 aa4.79□□□□□ -1.64
USP28-202ENST00000535607 C9orf85Q96MD7 179 aa4.79□□□□□ -1.64
USP28-202ENST00000535607 LITAFQ99732 161 aa4.79□□□□□ -1.64
USP28-202ENST00000535607 MOB4Q9Y3A3 225 aa4.79□□□□□ -1.64
USP28-202ENST00000535607 NBPF19A0A087WUL8 3843 aa4.79□□□□□ -1.64
USP28-202ENST00000535607 IGHV1OR15-1A0A075B7D0 117 aa4.78□□□□□ -1.64
USP28-202ENST00000535607 IGLV5-45A0A087WSX0 123 aa4.78□□□□□ -1.64
USP28-202ENST00000535607 IGHV4-30-2A0A087WSY4 118 aa4.78□□□□□ -1.64
USP28-202ENST00000535607 IGHV3-49A0A0A0MS15 119 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 100.3 ms