RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 PDZD11Q5EBL8 140 aa9.73□□□□□ -0.85
CPSF1-206ENST00000531480 TMEM243Q9BU79 118 aa9.73□□□□□ -0.85
CPSF1-206ENST00000531480 MAP1LC3CQ9BXW4 147 aa9.73□□□□□ -0.85
CPSF1-206ENST00000531480 CYSLTR1Q9Y271 337 aa9.73□□□□□ -0.85
CPSF1-206ENST00000531480 A0A1B0GUV1 79 aa9.72□□□□□ -0.85
CPSF1-206ENST00000531480 C20orf202A1L168 122 aa9.72□□□□□ -0.85
CPSF1-206ENST00000531480 MPV17L2Q567V2 206 aa9.72□□□□□ -0.85
CPSF1-206ENST00000531480 HIST1H2BLQ99880 126 aa9.72□□□□□ -0.85
CPSF1-206ENST00000531480 CHCHD5Q9BSY4 110 aa9.72□□□□□ -0.85
CPSF1-206ENST00000531480 A0A087WX48 190 aa9.71□□□□□ -0.86
CPSF1-206ENST00000531480 H7C423 109 aa9.71□□□□□ -0.86
CPSF1-206ENST00000531480 NPSP0C0P6 89 aa9.71□□□□□ -0.86
CPSF1-206ENST00000531480 NFE4Q86UQ8 179 aa9.71□□□□□ -0.86
CPSF1-206ENST00000531480 RBX1P62877 108 aa9.7□□□□□ -0.86
CPSF1-206ENST00000531480 TMEM141Q96I45 108 aa9.7□□□□□ -0.86
CPSF1-206ENST00000531480 PKD1P98161 4303 aa9.69□□□□□ -0.86
CPSF1-206ENST00000531480 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.69□□□□□ -0.86
CPSF1-206ENST00000531480 GAGE6Q13070 117 aa9.69□□□□□ -0.86
CPSF1-206ENST00000531480 FAM19A2Q8N3H0 131 aa9.69□□□□□ -0.86
CPSF1-206ENST00000531480 OR10D4PQ8NGN7 298 aa9.69□□□□□ -0.86
CPSF1-206ENST00000531480 DEFB104AQ8WTQ1 72 aa9.69□□□□□ -0.86
CPSF1-206ENST00000531480 PRR34Q9NV39 138 aa9.69□□□□□ -0.86
CPSF1-206ENST00000531480 HECTD4Q9Y4D8 3996 aa9.69□□□□□ -0.86
CPSF1-206ENST00000531480 HERC2O95714 4834 aa9.68□□□□□ -0.86
CPSF1-206ENST00000531480 TRAV8-3A0A0A6YYJ7 113 aa9.68□□□□□ -0.86
CPSF1-206ENST00000531480 A0A1B0GVY2 172 aa9.68□□□□□ -0.86
CPSF1-206ENST00000531480 TMEM262E9PQX1 116 aa9.68□□□□□ -0.86
CPSF1-206ENST00000531480 UBE2L6O14933 153 aa9.68□□□□□ -0.86
CPSF1-206ENST00000531480 Q6ZN92 141 aa9.68□□□□□ -0.86
CPSF1-206ENST00000531480 Q8N976 141 aa9.68□□□□□ -0.86
CPSF1-206ENST00000531480 C20orf203Q8NBC4 194 aa9.68□□□□□ -0.86
CPSF1-206ENST00000531480 TOMM6Q96B49 74 aa9.68□□□□□ -0.86
CPSF1-206ENST00000531480 SCGB3A1Q96QR1 104 aa9.68□□□□□ -0.86
CPSF1-206ENST00000531480 KLK12Q9UKR0 248 aa9.68□□□□□ -0.86
CPSF1-206ENST00000531480 LOC105371267A0A1B0GV96 52 aa9.67□□□□□ -0.86
CPSF1-206ENST00000531480 PRSS29PA6NIE9 313 aa9.67□□□□□ -0.86
CPSF1-206ENST00000531480 NUPR1O60356 82 aa9.67□□□□□ -0.86
CPSF1-206ENST00000531480 DGAT2L7PQ6IED9 249 aa9.67□□□□□ -0.86
CPSF1-206ENST00000531480 PET117Q6UWS5 81 aa9.67□□□□□ -0.86
CPSF1-206ENST00000531480 ENHOQ6UWT2 76 aa9.67□□□□□ -0.86
CPSF1-206ENST00000531480 ERASQ7Z444 233 aa9.67□□□□□ -0.86
CPSF1-206ENST00000531480 MRPL52Q86TS9 123 aaKnown RBP9.67□□□□□ -0.86
CPSF1-206ENST00000531480 IFI27L1Q96BM0 104 aa9.67□□□□□ -0.86
CPSF1-206ENST00000531480 IGLV4-60A0A075B6I1 120 aa9.66□□□□□ -0.86
CPSF1-206ENST00000531480 PRSS1P07477 247 aa9.66□□□□□ -0.86
CPSF1-206ENST00000531480 ZNF25P17030 456 aaPredicted RBP9.66□□□□□ -0.86
CPSF1-206ENST00000531480 KRTDAPP60985 99 aa9.66□□□□□ -0.86
CPSF1-206ENST00000531480 TNP2Q05952 138 aa9.66□□□□□ -0.86
CPSF1-206ENST00000531480 C2orf66Q6UXQ4 117 aa9.66□□□□□ -0.86
CPSF1-206ENST00000531480 URB1-AS1Q96HZ7 61 aa9.66□□□□□ -0.86
CPSF1-206ENST00000531480 SPANXA1Q9NS26 97 aa9.66□□□□□ -0.86
CPSF1-206ENST00000531480 DNAH11Q96DT5 4516 aa9.65□□□□□ -0.86
CPSF1-206ENST00000531480 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.65□□□□□ -0.86
CPSF1-206ENST00000531480 IGKV2-29A2NJV5 120 aaPredicted RBP9.65□□□□□ -0.86
CPSF1-206ENST00000531480 ANGP03950 147 aaKnown RBP9.65□□□□□ -0.86
CPSF1-206ENST00000531480 LINC00310P59036 64 aa9.65□□□□□ -0.86
CPSF1-206ENST00000531480 TMEM101Q96IK0 257 aa9.65□□□□□ -0.86
CPSF1-206ENST00000531480 TIMM17AQ99595 171 aa9.65□□□□□ -0.86
CPSF1-206ENST00000531480 PYGO1Q9Y3Y4 419 aa9.65□□□□□ -0.86
CPSF1-206ENST00000531480 CSDC2Q9Y534 153 aaKnown RBP9.65□□□□□ -0.86
CPSF1-206ENST00000531480 SCGB1D1O95968 90 aa9.64□□□□□ -0.87
CPSF1-206ENST00000531480 SMIM6P0DI80 62 aa9.64□□□□□ -0.87
CPSF1-206ENST00000531480 FGF6P10767 208 aa9.64□□□□□ -0.87
CPSF1-206ENST00000531480 S100A12P80511 92 aa9.64□□□□□ -0.87
CPSF1-206ENST00000531480 PMCHL1Q16048 86 aa9.64□□□□□ -0.87
CPSF1-206ENST00000531480 SPATA12Q7Z6I5 190 aa9.64□□□□□ -0.87
CPSF1-206ENST00000531480 TIMM21Q9BVV7 248 aa9.64□□□□□ -0.87
CPSF1-206ENST00000531480 COX11Q9Y6N1 276 aa9.64□□□□□ -0.87
CPSF1-206ENST00000531480 MIAQ16674 131 aa9.63□□□□□ -0.87
CPSF1-206ENST00000531480 AMMECR1LQ6DCA0 310 aa9.63□□□□□ -0.87
CPSF1-206ENST00000531480 LINC00269Q8N2A0 174 aa9.63□□□□□ -0.87
CPSF1-206ENST00000531480 UBE2WQ96B02 151 aa9.63□□□□□ -0.87
CPSF1-206ENST00000531480 TM2D2Q9BX73 214 aa9.63□□□□□ -0.87
CPSF1-206ENST00000531480 Q9HAA7 133 aa9.63□□□□□ -0.87
CPSF1-206ENST00000531480 LRCOL1A6NCL2 159 aa9.62□□□□□ -0.87
CPSF1-206ENST00000531480 SYS1-DBNDD2H3BUS1 97 aa9.62□□□□□ -0.87
CPSF1-206ENST00000531480 REG3AQ06141 175 aa9.62□□□□□ -0.87
CPSF1-206ENST00000531480 JOSD1Q15040 202 aaPredicted RBP9.62□□□□□ -0.87
CPSF1-206ENST00000531480 KRTAP26-1Q6PEX3 210 aa9.62□□□□□ -0.87
CPSF1-206ENST00000531480 RMI2Q96E14 147 aa9.62□□□□□ -0.87
CPSF1-206ENST00000531480 C2orf88Q9BSF0 95 aa9.62□□□□□ -0.87
CPSF1-206ENST00000531480 VCX2Q9H322 139 aa9.62□□□□□ -0.87
CPSF1-206ENST00000531480 UBE2D4Q9Y2X8 147 aa9.62□□□□□ -0.87
CPSF1-206ENST00000531480 KIAA1109Q2LD37 5005 aa9.62□□□□□ -0.87
CPSF1-206ENST00000531480 DYNC1H1Q14204 4646 aaKnown RBP9.62□□□□□ -0.87
CPSF1-206ENST00000531480 IFITM10A6NMD0 228 aa9.61□□□□□ -0.87
CPSF1-206ENST00000531480 HSBP1L1C9JCN9 74 aa9.61□□□□□ -0.87
CPSF1-206ENST00000531480 MAPKAPK5-AS1Q8N8E1 139 aa9.61□□□□□ -0.87
CPSF1-206ENST00000531480 TRAV12-1A0A0B4J245 112 aa9.6□□□□□ -0.87
CPSF1-206ENST00000531480 TRAV8-4A0A0B4J246 113 aa9.6□□□□□ -0.87
CPSF1-206ENST00000531480 CRPP02741 224 aa9.6□□□□□ -0.87
CPSF1-206ENST00000531480 C3orf79P0CE67 100 aa9.6□□□□□ -0.87
CPSF1-206ENST00000531480 FAM104AQ969W3 186 aa9.6□□□□□ -0.87
CPSF1-206ENST00000531480 CDC42SE2Q9NRR3 84 aa9.6□□□□□ -0.87
CPSF1-206ENST00000531480 PKHD1P08F94 4074 aa9.59□□□□□ -0.87
CPSF1-206ENST00000531480 A0A087WTM6 91 aa9.59□□□□□ -0.87
CPSF1-206ENST00000531480 SEC11AP67812 179 aa9.59□□□□□ -0.87
CPSF1-206ENST00000531480 PMVKQ15126 192 aa9.59□□□□□ -0.87
CPSF1-206ENST00000531480 OR5A1Q8NGJ0 315 aa9.59□□□□□ -0.87
CPSF1-206ENST00000531480 IGKV2D-24A0A075B6R9 120 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 79.4 ms