RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 TMEM101Q96IK0 257 aa14.55□□□□□ -0.08
VPS28-208ENST00000527797 TRAV9-2A0A087WT02 112 aa14.55□□□□□ -0.08
VPS28-208ENST00000527797 DPM2O94777 84 aa14.55□□□□□ -0.08
VPS28-208ENST00000527797 AMELXQ99217 191 aa14.55□□□□□ -0.08
VPS28-208ENST00000527797 IGKCP01834 107 aa14.54□□□□□ -0.08
VPS28-208ENST00000527797 ZNF25P17030 456 aaPredicted RBP14.54□□□□□ -0.08
VPS28-208ENST00000527797 OR5A1Q8NGJ0 315 aa14.54□□□□□ -0.08
VPS28-208ENST00000527797 PLNP26678 52 aa14.53□□□□□ -0.08
VPS28-208ENST00000527797 Q6ZUT4 128 aa14.53□□□□□ -0.08
VPS28-208ENST00000527797 HSBP1L1C9JCN9 74 aa14.52□□□□□ -0.08
VPS28-208ENST00000527797 LELP1Q5T871 98 aa14.52□□□□□ -0.08
VPS28-208ENST00000527797 LYPD5Q6UWN5 251 aa14.52□□□□□ -0.08
VPS28-208ENST00000527797 PAM16Q9Y3D7 125 aa14.52□□□□□ -0.08
VPS28-208ENST00000527797 TIRAPP58753 221 aa14.52□□□□□ -0.09
VPS28-208ENST00000527797 MAJINQ3KP22 176 aa14.52□□□□□ -0.09
VPS28-208ENST00000527797 RNASE13Q5GAN3 156 aaKnown RBP14.52□□□□□ -0.09
VPS28-208ENST00000527797 TMEM262E9PQX1 116 aa14.51□□□□□ -0.09
VPS28-208ENST00000527797 ZNF664Q8N3J9 261 aa14.51□□□□□ -0.09
VPS28-208ENST00000527797 C2orf88Q9BSF0 95 aa14.51□□□□□ -0.09
VPS28-208ENST00000527797 CDC42SE2Q9NRR3 84 aa14.51□□□□□ -0.09
VPS28-208ENST00000527797 hDV102S1A0JD36 115 aa14.5□□□□□ -0.09
VPS28-208ENST00000527797 SPATA45Q537H7 98 aa14.49□□□□□ -0.09
VPS28-208ENST00000527797 C15orf53Q8NAA6 179 aa14.49□□□□□ -0.09
VPS28-208ENST00000527797 IGLV4-69A0A075B6H9 119 aa14.48□□□□□ -0.09
VPS28-208ENST00000527797 A0A1B0GUV1 79 aa14.47□□□□□ -0.09
VPS28-208ENST00000527797 PKIAP61925 76 aa14.47□□□□□ -0.09
VPS28-208ENST00000527797 IGLV4-60A0A075B6I1 120 aa14.46□□□□□ -0.09
VPS28-208ENST00000527797 TRAV8-6A0A0B4J262 113 aa14.46□□□□□ -0.09
VPS28-208ENST00000527797 STPG4Q8N801 248 aa14.46□□□□□ -0.09
VPS28-208ENST00000527797 A0A0J9YXV3 536 aa14.45□□□□□ -0.1
VPS28-208ENST00000527797 IGLC3P0DOY3 106 aa14.45□□□□□ -0.1
VPS28-208ENST00000527797 RBX1P62877 108 aa14.45□□□□□ -0.1
VPS28-208ENST00000527797 NFE4Q86UQ8 179 aa14.45□□□□□ -0.1
VPS28-208ENST00000527797 PRO1933Q9H354 126 aa14.45□□□□□ -0.1
VPS28-208ENST00000527797 HUWE1Q7Z6Z7 4374 aaKnown RBP14.45□□□□□ -0.1
VPS28-208ENST00000527797 C11orf86A6NJI1 115 aa14.44□□□□□ -0.1
VPS28-208ENST00000527797 IGLL5B9A064 214 aa14.44□□□□□ -0.1
VPS28-208ENST00000527797 MPV17L2Q567V2 206 aa14.44□□□□□ -0.1
VPS28-208ENST00000527797 UBE2D1P51668 147 aa14.44□□□□□ -0.1
VPS28-208ENST00000527797 ESRGQ1W209 222 aa14.44□□□□□ -0.1
VPS28-208ENST00000527797 CHAC1Q9BUX1 264 aa14.44□□□□□ -0.1
VPS28-208ENST00000527797 TSTD3H0UI37 97 aa14.43□□□□□ -0.1
VPS28-208ENST00000527797 TRAV13-1A0A0B4J241 112 aa14.41□□□□□ -0.1
VPS28-208ENST00000527797 TINCRA0A1B0GVN0 87 aa14.41□□□□□ -0.1
VPS28-208ENST00000527797 ANKRD39Q53RE8 183 aa14.41□□□□□ -0.1
VPS28-208ENST00000527797 TMEM170BQ5T4T1 132 aa14.41□□□□□ -0.1
VPS28-208ENST00000527797 SEC11AP67812 179 aa14.4□□□□□ -0.1
VPS28-208ENST00000527797 MEGF8Q7Z7M0 2845 aa14.39□□□□□ -0.11
VPS28-208ENST00000527797 TCTAP57738 103 aa14.39□□□□□ -0.11
VPS28-208ENST00000527797 GEMIN7Q9H840 131 aaKnown RBP14.39□□□□□ -0.11
VPS28-208ENST00000527797 PCP4L1A6NKN8 68 aa14.38□□□□□ -0.11
VPS28-208ENST00000527797 ZNF22P17026 224 aaPredicted RBP14.38□□□□□ -0.11
VPS28-208ENST00000527797 FAM19A3Q7Z5A8 133 aa14.38□□□□□ -0.11
VPS28-208ENST00000527797 IGKV3OR2-268A0A0C4DH90 116 aa14.37□□□□□ -0.11
VPS28-208ENST00000527797 LINC00242Q5T6M2 205 aa14.37□□□□□ -0.11
VPS28-208ENST00000527797 DNAH9Q9NYC9 4486 aa14.37□□□□□ -0.11
VPS28-208ENST00000527797 ANGP03950 147 aaKnown RBP14.37□□□□□ -0.11
VPS28-208ENST00000527797 HERVK_113P61574 105 aa14.37□□□□□ -0.11
VPS28-208ENST00000527797 HERVK_113P63121 156 aa14.37□□□□□ -0.11
VPS28-208ENST00000527797 WFDC10BQ8IUB3 73 aa14.37□□□□□ -0.11
VPS28-208ENST00000527797 Q8N3U1 123 aa14.37□□□□□ -0.11
VPS28-208ENST00000527797 C14orf144Q96I85 54 aa14.37□□□□□ -0.11
VPS28-208ENST00000527797 NMUP48645 174 aa14.35□□□□□ -0.11
VPS28-208ENST00000527797 CCL18P55774 89 aa14.35□□□□□ -0.11
VPS28-208ENST00000527797 NUPR2A6NF83 97 aa14.34□□□□□ -0.11
VPS28-208ENST00000527797 LINC00269Q8N2A0 174 aa14.34□□□□□ -0.11
VPS28-208ENST00000527797 LINC00469Q8N7U9 141 aa14.34□□□□□ -0.11
VPS28-208ENST00000527797 LINC00959A0A1B0GUT2 108 aa14.33□□□□□ -0.11
VPS28-208ENST00000527797 TMEM223A0PJW6 202 aa14.33□□□□□ -0.11
VPS28-208ENST00000527797 E9PLD3 99 aa14.33□□□□□ -0.11
VPS28-208ENST00000527797 IGHV3-30P01768 117 aa14.33□□□□□ -0.11
VPS28-208ENST00000527797 IGHV3-33P01772 117 aa14.33□□□□□ -0.11
VPS28-208ENST00000527797 IGHV3-30-3P0DP02 117 aa14.33□□□□□ -0.11
VPS28-208ENST00000527797 IGHV3-30-5P0DP03 117 aa14.33□□□□□ -0.11
VPS28-208ENST00000527797 MIEN1Q9BRT3 115 aa14.33□□□□□ -0.11
VPS28-208ENST00000527797 UQCR10Q9UDW1 63 aa14.33□□□□□ -0.11
VPS28-208ENST00000527797 IGLV5-45A0A087WSX0 123 aa14.33□□□□□ -0.12
VPS28-208ENST00000527797 IGKV2D-26A0A0A0MRZ7 120 aa14.33□□□□□ -0.12
VPS28-208ENST00000527797 COX6A2Q02221 97 aa14.33□□□□□ -0.12
VPS28-208ENST00000527797 SS18Q15532 418 aa14.33□□□□□ -0.12
VPS28-208ENST00000527797 KLK5Q9Y337 293 aaPredicted RBP14.33□□□□□ -0.12
VPS28-208ENST00000527797 MRPS16Q9Y3D3 137 aaKnown RBP14.33□□□□□ -0.12
VPS28-208ENST00000527797 LINC00588Q9Y4M8 146 aa14.33□□□□□ -0.12
VPS28-208ENST00000527797 COL7A1Q02388 2944 aa14.32□□□□□ -0.12
VPS28-208ENST00000527797 H3BRM9 83 aa14.32□□□□□ -0.12
VPS28-208ENST00000527797 COX8AP10176 69 aa14.32□□□□□ -0.12
VPS28-208ENST00000527797 REG3AQ06141 175 aa14.32□□□□□ -0.12
VPS28-208ENST00000527797 CLPSL2Q6UWE3 100 aa14.32□□□□□ -0.12
VPS28-208ENST00000527797 CCL25O15444 150 aa14.31□□□□□ -0.12
VPS28-208ENST00000527797 SLC25A34Q6PIV7 304 aa14.31□□□□□ -0.12
VPS28-208ENST00000527797 CDKN2A-AS1Q9UH64 79 aa14.31□□□□□ -0.12
VPS28-208ENST00000527797 APLNQ9ULZ1 77 aa14.31□□□□□ -0.12
VPS28-208ENST00000527797 KLK12Q9UKR0 248 aa14.3□□□□□ -0.12
VPS28-208ENST00000527797 STAB2Q8WWQ8 2551 aa14.3□□□□□ -0.12
VPS28-208ENST00000527797 DDTP30046 118 aa14.3□□□□□ -0.12
VPS28-208ENST00000527797 LINC01556Q5JQF7 62 aa14.29□□□□□ -0.12
VPS28-208ENST00000527797 PCP2Q8IVA1 136 aa14.28□□□□□ -0.12
VPS28-208ENST00000527797 PRR34Q9NV39 138 aa14.28□□□□□ -0.12
VPS28-208ENST00000527797 LEPROTO15243 131 aa14.27□□□□□ -0.12
VPS28-208ENST00000527797 BOD1L2Q8IYS8 172 aa14.27□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 68 ms