RNA–Protein interactions for RNA: ENST00000523511.1

LSM1-205, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 700 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-205ENST00000523511 SMKR1H3BMG3 65 aa10.6□□□□□ -0.71
LSM1-205ENST00000523511 GAS8-AS1O95177 125 aa10.6□□□□□ -0.71
LSM1-205ENST00000523511 SS18Q15532 418 aa10.6□□□□□ -0.71
LSM1-205ENST00000523511 CLLU1Q5K131 121 aa10.6□□□□□ -0.71
LSM1-205ENST00000523511 MRPL54Q6P161 138 aaKnown RBP10.6□□□□□ -0.71
LSM1-205ENST00000523511 MRPL52Q86TS9 123 aaKnown RBP10.6□□□□□ -0.71
LSM1-205ENST00000523511 CHCHD10Q8WYQ3 142 aaPredicted RBP10.6□□□□□ -0.71
LSM1-205ENST00000523511 TRBV24-1A0A075B6N3 115 aa10.59□□□□□ -0.71
LSM1-205ENST00000523511 CCL25O15444 150 aa10.59□□□□□ -0.71
LSM1-205ENST00000523511 HAMPP81172 84 aa10.59□□□□□ -0.71
LSM1-205ENST00000523511 NRACQ8N912 160 aa10.59□□□□□ -0.71
LSM1-205ENST00000523511 CNBPP62633 177 aaKnown RBP10.58□□□□□ -0.72
LSM1-205ENST00000523511 RPL32P62910 135 aaKnown RBP10.58□□□□□ -0.72
LSM1-205ENST00000523511 ZNF664Q8N3J9 261 aa10.58□□□□□ -0.72
LSM1-205ENST00000523511 PHOX2AO14813 284 aa10.57□□□□□ -0.72
LSM1-205ENST00000523511 DPH3Q96FX2 82 aa10.57□□□□□ -0.72
LSM1-205ENST00000523511 CDC42SE2Q9NRR3 84 aa10.57□□□□□ -0.72
LSM1-205ENST00000523511 CSDC2Q9Y534 153 aaKnown RBP10.57□□□□□ -0.72
LSM1-205ENST00000523511 IGHV3-64A0A075B6Q5 118 aa10.56□□□□□ -0.72
LSM1-205ENST00000523511 TNFRSF6BO95407 300 aa10.56□□□□□ -0.72
LSM1-205ENST00000523511 UQCC3Q6UW78 93 aa10.56□□□□□ -0.72
LSM1-205ENST00000523511 SCXQ7RTU7 201 aa10.56□□□□□ -0.72
LSM1-205ENST00000523511 ABCA13Q86UQ4 5058 aa10.55□□□□□ -0.72
LSM1-205ENST00000523511 LINC00959A0A1B0GUT2 108 aa10.55□□□□□ -0.72
LSM1-205ENST00000523511 A0A1B0GXF2 115 aa10.55□□□□□ -0.72
LSM1-205ENST00000523511 C1orf196B1AJZ1 125 aa10.55□□□□□ -0.72
LSM1-205ENST00000523511 D6R8Y8 96 aa10.55□□□□□ -0.72
LSM1-205ENST00000523511 RAB5AP20339 215 aa10.55□□□□□ -0.72
LSM1-205ENST00000523511 ORMDL3Q8N138 153 aa10.55□□□□□ -0.72
LSM1-205ENST00000523511 PKIGQ9Y2B9 76 aa10.55□□□□□ -0.72
LSM1-205ENST00000523511 XCL1P47992 114 aa10.54□□□□□ -0.72
LSM1-205ENST00000523511 TMEM136Q6ZRR5 245 aa10.54□□□□□ -0.72
LSM1-205ENST00000523511 LINC00528Q8N1L1 170 aa10.54□□□□□ -0.72
LSM1-205ENST00000523511 CIRBP-AS1Q8TBR5 109 aa10.54□□□□□ -0.72
LSM1-205ENST00000523511 CD164L2Q6UWJ8 174 aa10.53□□□□□ -0.72
LSM1-205ENST00000523511 TIMM21Q9BVV7 248 aa10.53□□□□□ -0.72
LSM1-205ENST00000523511 IGHV1-58A0A0C4DH39 117 aa10.52□□□□□ -0.73
LSM1-205ENST00000523511 SDIM1Q6ZPB5 146 aa10.52□□□□□ -0.73
LSM1-205ENST00000523511 SMIM2Q9BVW6 85 aa10.52□□□□□ -0.73
LSM1-205ENST00000523511 LAMTOR2Q9Y2Q5 125 aa10.52□□□□□ -0.73
LSM1-205ENST00000523511 UBE2D4Q9Y2X8 147 aa10.52□□□□□ -0.73
LSM1-205ENST00000523511 MALP21145 153 aa10.51□□□□□ -0.73
LSM1-205ENST00000523511 FOXI1Q12951 378 aa10.51□□□□□ -0.73
LSM1-205ENST00000523511 PRELID3AQ96N28 172 aa10.51□□□□□ -0.73
LSM1-205ENST00000523511 IMMP2LQ96T52 175 aa10.51□□□□□ -0.73
LSM1-205ENST00000523511 GVQW2A0A096LPI5 108 aaPredicted RBP10.5□□□□□ -0.73
LSM1-205ENST00000523511 ZNF561-AS1K7EIQ3 104 aa10.5□□□□□ -0.73
LSM1-205ENST00000523511 C15orf56Q8N910 161 aa10.5□□□□□ -0.73
LSM1-205ENST00000523511 CTDSP1Q9GZU7 261 aa10.5□□□□□ -0.73
LSM1-205ENST00000523511 TMEM218A2RU14 115 aa10.49□□□□□ -0.73
LSM1-205ENST00000523511 HIGD2BQ4VC39 106 aa10.49□□□□□ -0.73
LSM1-205ENST00000523511 SPANXA1Q9NS26 97 aa10.49□□□□□ -0.73
LSM1-205ENST00000523511 APOMO95445 188 aa10.48□□□□□ -0.73
LSM1-205ENST00000523511 NPYP01303 97 aa10.48□□□□□ -0.73
LSM1-205ENST00000523511 MAP1LC3AQ9H492 121 aa10.48□□□□□ -0.73
LSM1-205ENST00000523511 TRAV13-1A0A0B4J241 112 aa10.47□□□□□ -0.73
LSM1-205ENST00000523511 COX7A2LO14548 114 aa10.47□□□□□ -0.73
LSM1-205ENST00000523511 S100PP25815 95 aa10.47□□□□□ -0.73
LSM1-205ENST00000523511 PRSS47A8MTI9 375 aa10.46□□□□□ -0.73
LSM1-205ENST00000523511 SLPIP03973 132 aa10.46□□□□□ -0.73
LSM1-205ENST00000523511 G0S2P27469 103 aa10.46□□□□□ -0.73
LSM1-205ENST00000523511 IFI27P40305 119 aaPredicted RBP10.46□□□□□ -0.73
LSM1-205ENST00000523511 SEC11CQ9BY50 192 aa10.46□□□□□ -0.73
LSM1-205ENST00000523511 LINC00474Q9P2X8 69 aa10.46□□□□□ -0.73
LSM1-205ENST00000523511 TRAV9-1A0A075B6T8 112 aa10.45□□□□□ -0.74
LSM1-205ENST00000523511 K7EMI3 77 aa10.45□□□□□ -0.74
LSM1-205ENST00000523511 MRPS36P82909 103 aaKnown RBP10.45□□□□□ -0.74
LSM1-205ENST00000523511 IFITM2Q01629 132 aa10.45□□□□□ -0.74
LSM1-205ENST00000523511 LOC389332A0A1B0GUA5 103 aa10.44□□□□□ -0.74
LSM1-205ENST00000523511 COX6A2Q02221 97 aa10.44□□□□□ -0.74
LSM1-205ENST00000523511 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.44□□□□□ -0.74
LSM1-205ENST00000523511 RPL37AP61513 92 aaKnown RBP10.43□□□□□ -0.74
LSM1-205ENST00000523511 RPL39P62891 51 aaKnown RBP10.43□□□□□ -0.74
LSM1-205ENST00000523511 CIRBPQ14011 172 aaKnown RBP10.43□□□□□ -0.74
LSM1-205ENST00000523511 ORMDL2Q53FV1 153 aa10.43□□□□□ -0.74
LSM1-205ENST00000523511 RNASE13Q5GAN3 156 aaKnown RBP10.43□□□□□ -0.74
LSM1-205ENST00000523511 Q6ZUT4 128 aa10.43□□□□□ -0.74
LSM1-205ENST00000523511 PYGO1Q9Y3Y4 419 aa10.43□□□□□ -0.74
LSM1-205ENST00000523511 SYCNQ0VAF6 134 aa10.42□□□□□ -0.74
LSM1-205ENST00000523511 Q8N8P6 123 aa10.42□□□□□ -0.74
LSM1-205ENST00000523511 CARD19Q96LW7 228 aa10.42□□□□□ -0.74
LSM1-205ENST00000523511 NXT2Q9NPJ8 142 aaKnown RBP10.42□□□□□ -0.74
LSM1-205ENST00000523511 DNAH8Q96JB1 4490 aa10.42□□□□□ -0.74
LSM1-205ENST00000523511 IFITM10A6NMD0 228 aa10.41□□□□□ -0.74
LSM1-205ENST00000523511 COX19Q49B96 90 aa10.41□□□□□ -0.74
LSM1-205ENST00000523511 COMMD7Q86VX2 200 aa10.41□□□□□ -0.74
LSM1-205ENST00000523511 FAT1Q14517 4588 aa10.41□□□□□ -0.74
LSM1-205ENST00000523511 J3QL48 77 aa10.4□□□□□ -0.74
LSM1-205ENST00000523511 MAJINQ3KP22 176 aa10.4□□□□□ -0.74
LSM1-205ENST00000523511 Q6ZN92 141 aa10.4□□□□□ -0.74
LSM1-205ENST00000523511 C5orf38Q86SI9 138 aa10.4□□□□□ -0.74
LSM1-205ENST00000523511 SPACA4Q8TDM5 124 aa10.4□□□□□ -0.74
LSM1-205ENST00000523511 C7orf33Q8WU49 177 aa10.4□□□□□ -0.74
LSM1-205ENST00000523511 CYSLTR1Q9Y271 337 aa10.4□□□□□ -0.74
LSM1-205ENST00000523511 IGLV4-69A0A075B6H9 119 aa10.39□□□□□ -0.75
LSM1-205ENST00000523511 A0A087WYN8 130 aa10.39□□□□□ -0.75
LSM1-205ENST00000523511 F8WDY8 70 aa10.39□□□□□ -0.75
LSM1-205ENST00000523511 PAPPA-AS1Q5QFB9 102 aa10.39□□□□□ -0.75
LSM1-205ENST00000523511 PRSS3P2Q8NHM4 247 aa10.39□□□□□ -0.75
LSM1-205ENST00000523511 C2orf48Q96LS8 159 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 155.7 ms