RNA–Protein interactions for RNA: ENST00000522515.5

LSM1-204, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 1,568 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-204ENST00000522515 OPRPNQ99935 248 aaPredicted RBP10.98□□□□□ -0.65
LSM1-204ENST00000522515 SPANXA1Q9NS26 97 aa10.98□□□□□ -0.65
LSM1-204ENST00000522515 CSDC2Q9Y534 153 aaKnown RBP10.98□□□□□ -0.65
LSM1-204ENST00000522515 K7EP13 123 aa10.97□□□□□ -0.65
LSM1-204ENST00000522515 TTC32Q5I0X7 151 aa10.97□□□□□ -0.65
LSM1-204ENST00000522515 Q6ZR54 194 aa10.97□□□□□ -0.65
LSM1-204ENST00000522515 LINC00269Q8N2A0 174 aa10.97□□□□□ -0.65
LSM1-204ENST00000522515 C10orf126Q8N4M7 172 aa10.97□□□□□ -0.65
LSM1-204ENST00000522515 CDC42SE2Q9NRR3 84 aa10.97□□□□□ -0.65
LSM1-204ENST00000522515 PYGO1Q9Y3Y4 419 aa10.97□□□□□ -0.65
LSM1-204ENST00000522515 KMT2AQ03164 3969 aa10.97□□□□□ -0.65
LSM1-204ENST00000522515 IGIPA6NJ69 53 aa10.96□□□□□ -0.65
LSM1-204ENST00000522515 IBA57-AS1B1ANH7 110 aa10.96□□□□□ -0.65
LSM1-204ENST00000522515 RNASE13Q5GAN3 156 aaKnown RBP10.96□□□□□ -0.65
LSM1-204ENST00000522515 COA6Q5JTJ3 125 aaKnown RBP10.96□□□□□ -0.65
LSM1-204ENST00000522515 Q6ZUT4 128 aa10.96□□□□□ -0.65
LSM1-204ENST00000522515 KMT2CQ8NEZ4 4911 aaKnown RBP10.96□□□□□ -0.66
LSM1-204ENST00000522515 CLPSL2Q6UWE3 100 aa10.95□□□□□ -0.66
LSM1-204ENST00000522515 ZNF664Q8N3J9 261 aa10.95□□□□□ -0.66
LSM1-204ENST00000522515 SCGB3A1Q96QR1 104 aa10.95□□□□□ -0.66
LSM1-204ENST00000522515 IGLV4-3A0A075B6K6 122 aa10.94□□□□□ -0.66
LSM1-204ENST00000522515 LINC01549A6NIU2 74 aa10.94□□□□□ -0.66
LSM1-204ENST00000522515 ENHOQ6UWT2 76 aa10.94□□□□□ -0.66
LSM1-204ENST00000522515 ERASQ7Z444 233 aa10.94□□□□□ -0.66
LSM1-204ENST00000522515 UBE2WQ96B02 151 aa10.94□□□□□ -0.66
LSM1-204ENST00000522515 PRR34Q9NV39 138 aa10.94□□□□□ -0.66
LSM1-204ENST00000522515 HYDINQ4G0P3 5121 aa10.94□□□□□ -0.66
LSM1-204ENST00000522515 MRPS36P82909 103 aaKnown RBP10.94□□□□□ -0.66
LSM1-204ENST00000522515 REG3AQ06141 175 aa10.94□□□□□ -0.66
LSM1-204ENST00000522515 PDZD11Q5EBL8 140 aa10.94□□□□□ -0.66
LSM1-204ENST00000522515 TIMM17AQ99595 171 aa10.94□□□□□ -0.66
LSM1-204ENST00000522515 Q9HAA7 133 aa10.93□□□□□ -0.66
LSM1-204ENST00000522515 IGKV3OR2-268A0A0C4DH90 116 aa10.92□□□□□ -0.66
LSM1-204ENST00000522515 CRPP02741 224 aa10.92□□□□□ -0.66
LSM1-204ENST00000522515 TMEM141Q96I45 108 aa10.92□□□□□ -0.66
LSM1-204ENST00000522515 NPSP0C0P6 89 aa10.91□□□□□ -0.66
LSM1-204ENST00000522515 ZC2HC1BQ5TFG8 222 aa10.91□□□□□ -0.66
LSM1-204ENST00000522515 TRAV8-3A0A0A6YYJ7 113 aa10.9□□□□□ -0.66
LSM1-204ENST00000522515 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP10.9□□□□□ -0.66
LSM1-204ENST00000522515 LINC00173Q6ZV60 143 aa10.9□□□□□ -0.66
LSM1-204ENST00000522515 MIAQ16674 131 aa10.9□□□□□ -0.67
LSM1-204ENST00000522515 Q6ZN92 141 aa10.9□□□□□ -0.67
LSM1-204ENST00000522515 DNAH6Q9C0G6 4158 aa10.89□□□□□ -0.67
LSM1-204ENST00000522515 IGLV10-54A0A075B6I4 117 aa10.89□□□□□ -0.67
LSM1-204ENST00000522515 LEPROTL1O95214 131 aa10.89□□□□□ -0.67
LSM1-204ENST00000522515 S100A6P06703 90 aa10.89□□□□□ -0.67
LSM1-204ENST00000522515 TEX43Q6ZNM6 134 aa10.89□□□□□ -0.67
LSM1-204ENST00000522515 AMELXQ99217 191 aa10.89□□□□□ -0.67
LSM1-204ENST00000522515 VCX2Q9H322 139 aa10.89□□□□□ -0.67
LSM1-204ENST00000522515 LINC00959A0A1B0GUT2 108 aa10.88□□□□□ -0.67
LSM1-204ENST00000522515 ATP5LO75964 103 aa10.88□□□□□ -0.67
LSM1-204ENST00000522515 FABP4P15090 132 aa10.88□□□□□ -0.67
LSM1-204ENST00000522515 PAPPA-AS1Q5QFB9 102 aa10.88□□□□□ -0.67
LSM1-204ENST00000522515 BAALCQ8WXS3 180 aa10.88□□□□□ -0.67
LSM1-204ENST00000522515 TRAV13-1A0A0B4J241 112 aa10.87□□□□□ -0.67
LSM1-204ENST00000522515 IFITM10A6NMD0 228 aa10.87□□□□□ -0.67
LSM1-204ENST00000522515 C6orf223Q8N319 242 aa10.87□□□□□ -0.67
LSM1-204ENST00000522515 IGKV2D-24A0A075B6R9 120 aa10.86□□□□□ -0.67
LSM1-204ENST00000522515 C1orf134Q5TEV5 83 aa10.86□□□□□ -0.67
LSM1-204ENST00000522515 IFI27L1Q96BM0 104 aa10.86□□□□□ -0.67
LSM1-204ENST00000522515 DNAH2Q9P225 4427 aa10.86□□□□□ -0.67
LSM1-204ENST00000522515 TRAV8-4A0A0B4J246 113 aa10.86□□□□□ -0.67
LSM1-204ENST00000522515 SNRPEP62304 92 aaKnown RBP10.86□□□□□ -0.67
LSM1-204ENST00000522515 C1orf43Q9BWL3 253 aa10.86□□□□□ -0.67
LSM1-204ENST00000522515 RYR2Q92736 4967 aa10.85□□□□□ -0.67
LSM1-204ENST00000522515 PRSS29PA6NIE9 313 aa10.85□□□□□ -0.67
LSM1-204ENST00000522515 PMVKQ15126 192 aa10.85□□□□□ -0.67
LSM1-204ENST00000522515 SS18Q15532 418 aa10.85□□□□□ -0.67
LSM1-204ENST00000522515 Q6ZRN7 208 aaPredicted RBP10.85□□□□□ -0.67
LSM1-204ENST00000522515 NFE4Q86UQ8 179 aa10.85□□□□□ -0.67
LSM1-204ENST00000522515 HIST3H2BBQ8N257 126 aa10.85□□□□□ -0.67
LSM1-204ENST00000522515 CHCHD10Q8WYQ3 142 aaPredicted RBP10.85□□□□□ -0.67
LSM1-204ENST00000522515 C2orf88Q9BSF0 95 aa10.85□□□□□ -0.67
LSM1-204ENST00000522515 CST9LQ9H4G1 147 aa10.85□□□□□ -0.67
LSM1-204ENST00000522515 HSPB8Q9UJY1 196 aa10.85□□□□□ -0.67
LSM1-204ENST00000522515 C5orf52A6NGY3 159 aa10.84□□□□□ -0.67
LSM1-204ENST00000522515 CCL25O15444 150 aa10.84□□□□□ -0.67
LSM1-204ENST00000522515 UBE2D1P51668 147 aa10.84□□□□□ -0.67
LSM1-204ENST00000522515 KRTAP26-1Q6PEX3 210 aa10.84□□□□□ -0.67
LSM1-204ENST00000522515 RMI2Q96E14 147 aa10.84□□□□□ -0.67
LSM1-204ENST00000522515 PRSS1P07477 247 aa10.83□□□□□ -0.68
LSM1-204ENST00000522515 XCL1P47992 114 aa10.83□□□□□ -0.68
LSM1-204ENST00000522515 DNAH10Q8IVF4 4471 aa10.82□□□□□ -0.68
LSM1-204ENST00000522515 MAPKAPK5-AS1Q8N8E1 139 aa10.82□□□□□ -0.68
LSM1-204ENST00000522515 TM2D2Q9BX73 214 aa10.82□□□□□ -0.68
LSM1-204ENST00000522515 LINC00242Q5T6M2 205 aa10.82□□□□□ -0.68
LSM1-204ENST00000522515 PACRGQ96M98 296 aaPredicted RBP10.82□□□□□ -0.68
LSM1-204ENST00000522515 COX11Q9Y6N1 276 aa10.82□□□□□ -0.68
LSM1-204ENST00000522515 GAGE12HA6NDE8 117 aa10.81□□□□□ -0.68
LSM1-204ENST00000522515 RTL8CO15255 209 aa10.81□□□□□ -0.68
LSM1-204ENST00000522515 S100A2P29034 98 aa10.81□□□□□ -0.68
LSM1-204ENST00000522515 A0A0J9YXV3 536 aa10.8□□□□□ -0.68
LSM1-204ENST00000522515 H0Y8G0 127 aa10.8□□□□□ -0.68
LSM1-204ENST00000522515 PSCAO43653 123 aa10.8□□□□□ -0.68
LSM1-204ENST00000522515 FOXI1Q12951 378 aa10.8□□□□□ -0.68
LSM1-204ENST00000522515 CD164L2Q6UWJ8 174 aa10.8□□□□□ -0.68
LSM1-204ENST00000522515 FAM19A3Q7Z5A8 133 aa10.8□□□□□ -0.68
LSM1-204ENST00000522515 HIST1H2BLQ99880 126 aa10.8□□□□□ -0.68
LSM1-204ENST00000522515 MAP1LC3CQ9BXW4 147 aa10.8□□□□□ -0.68
LSM1-204ENST00000522515 TRAV12-1A0A0B4J245 112 aa10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms