RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 C6orf223Q8N319 242 aa10.33□□□□□ -0.76
LSM1-203ENST00000520755 TIMM21Q9BVV7 248 aa10.33□□□□□ -0.76
LSM1-203ENST00000520755 DNAH10Q8IVF4 4471 aa10.32□□□□□ -0.76
LSM1-203ENST00000520755 IGIPA6NJ69 53 aa10.32□□□□□ -0.76
LSM1-203ENST00000520755 K7EP13 123 aa10.32□□□□□ -0.76
LSM1-203ENST00000520755 ZNF25P17030 456 aaPredicted RBP10.32□□□□□ -0.76
LSM1-203ENST00000520755 PKIAP61925 76 aa10.32□□□□□ -0.76
LSM1-203ENST00000520755 TMEM18Q96B42 140 aa10.32□□□□□ -0.76
LSM1-203ENST00000520755 OPRPNQ99935 248 aaPredicted RBP10.32□□□□□ -0.76
LSM1-203ENST00000520755 SPANXA1Q9NS26 97 aa10.32□□□□□ -0.76
LSM1-203ENST00000520755 AMMECR1LQ6DCA0 310 aa10.31□□□□□ -0.76
LSM1-203ENST00000520755 PYGO1Q9Y3Y4 419 aa10.31□□□□□ -0.76
LSM1-203ENST00000520755 CSDC2Q9Y534 153 aaKnown RBP10.31□□□□□ -0.76
LSM1-203ENST00000520755 IGLV4-3A0A075B6K6 122 aa10.3□□□□□ -0.76
LSM1-203ENST00000520755 RNASE13Q5GAN3 156 aaKnown RBP10.3□□□□□ -0.76
LSM1-203ENST00000520755 LINC00173Q6ZV60 143 aa10.3□□□□□ -0.76
LSM1-203ENST00000520755 OR5A1Q8NGJ0 315 aa10.3□□□□□ -0.76
LSM1-203ENST00000520755 TIMM17AQ99595 171 aa10.3□□□□□ -0.76
LSM1-203ENST00000520755 CDC42SE2Q9NRR3 84 aa10.3□□□□□ -0.76
LSM1-203ENST00000520755 FRAS1Q86XX4 4008 aa10.3□□□□□ -0.76
LSM1-203ENST00000520755 IBA57-AS1B1ANH7 110 aa10.29□□□□□ -0.76
LSM1-203ENST00000520755 RTL8CO15255 209 aa10.29□□□□□ -0.76
LSM1-203ENST00000520755 ANGP03950 147 aaKnown RBP10.29□□□□□ -0.76
LSM1-203ENST00000520755 CLPSL2Q6UWE3 100 aa10.29□□□□□ -0.76
LSM1-203ENST00000520755 Q9HAA7 133 aa10.29□□□□□ -0.76
LSM1-203ENST00000520755 KLK12Q9UKR0 248 aa10.29□□□□□ -0.76
LSM1-203ENST00000520755 DNAH17Q9UFH2 4485 aa10.28□□□□□ -0.76
LSM1-203ENST00000520755 G0S2P27469 103 aa10.28□□□□□ -0.76
LSM1-203ENST00000520755 MRPS36P82909 103 aaKnown RBP10.28□□□□□ -0.76
LSM1-203ENST00000520755 ZC2HC1BQ5TFG8 222 aa10.28□□□□□ -0.76
LSM1-203ENST00000520755 ERASQ7Z444 233 aa10.28□□□□□ -0.76
LSM1-203ENST00000520755 SCGB3A1Q96QR1 104 aa10.28□□□□□ -0.76
LSM1-203ENST00000520755 PRR34Q9NV39 138 aa10.28□□□□□ -0.76
LSM1-203ENST00000520755 TMA7Q9Y2S6 64 aaKnown RBP10.28□□□□□ -0.76
LSM1-203ENST00000520755 ENHOQ6UWT2 76 aa10.27□□□□□ -0.77
LSM1-203ENST00000520755 LINC00269Q8N2A0 174 aa10.27□□□□□ -0.77
LSM1-203ENST00000520755 ZNF664Q8N3J9 261 aa10.27□□□□□ -0.77
LSM1-203ENST00000520755 TMEM101Q96IK0 257 aa10.27□□□□□ -0.77
LSM1-203ENST00000520755 LINC01549A6NIU2 74 aa10.26□□□□□ -0.77
LSM1-203ENST00000520755 SMAGPQ0VAQ4 97 aa10.26□□□□□ -0.77
LSM1-203ENST00000520755 DGAT2L7PQ6IED9 249 aa10.26□□□□□ -0.77
LSM1-203ENST00000520755 NFE4Q86UQ8 179 aa10.26□□□□□ -0.77
LSM1-203ENST00000520755 HIST3H2BBQ8N257 126 aa10.26□□□□□ -0.77
LSM1-203ENST00000520755 UBE2WQ96B02 151 aa10.26□□□□□ -0.77
LSM1-203ENST00000520755 TMEM141Q96I45 108 aa10.26□□□□□ -0.77
LSM1-203ENST00000520755 AMELXQ99217 191 aa10.26□□□□□ -0.77
LSM1-203ENST00000520755 C5orf52A6NGY3 159 aa10.25□□□□□ -0.77
LSM1-203ENST00000520755 IFITM10A6NMD0 228 aa10.25□□□□□ -0.77
LSM1-203ENST00000520755 NPSP0C0P6 89 aa10.25□□□□□ -0.77
LSM1-203ENST00000520755 REG3AQ06141 175 aa10.25□□□□□ -0.77
LSM1-203ENST00000520755 BAALCQ8WXS3 180 aa10.25□□□□□ -0.77
LSM1-203ENST00000520755 TRAV8-3A0A0A6YYJ7 113 aa10.24□□□□□ -0.77
LSM1-203ENST00000520755 PRSS29PA6NIE9 313 aa10.24□□□□□ -0.77
LSM1-203ENST00000520755 LEPROTL1O95214 131 aa10.24□□□□□ -0.77
LSM1-203ENST00000520755 CRPP02741 224 aa10.24□□□□□ -0.77
LSM1-203ENST00000520755 S100A6P06703 90 aa10.24□□□□□ -0.77
LSM1-203ENST00000520755 FABP4P15090 132 aa10.24□□□□□ -0.77
LSM1-203ENST00000520755 SNRPEP62304 92 aaKnown RBP10.24□□□□□ -0.77
LSM1-203ENST00000520755 Q6ZRN7 208 aaPredicted RBP10.24□□□□□ -0.77
LSM1-203ENST00000520755 LINC00336Q6ZUF6 198 aa10.24□□□□□ -0.77
LSM1-203ENST00000520755 FAT2Q9NYQ8 4349 aa10.23□□□□□ -0.77
LSM1-203ENST00000520755 IGKV3OR2-268A0A0C4DH90 116 aa10.23□□□□□ -0.77
LSM1-203ENST00000520755 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP10.23□□□□□ -0.77
LSM1-203ENST00000520755 ATP5LO75964 103 aa10.23□□□□□ -0.77
LSM1-203ENST00000520755 IFI27L1Q96BM0 104 aa10.23□□□□□ -0.77
LSM1-203ENST00000520755 TNP2Q05952 138 aa10.22□□□□□ -0.77
LSM1-203ENST00000520755 TEX43Q6ZNM6 134 aa10.22□□□□□ -0.77
LSM1-203ENST00000520755 LINC00959A0A1B0GUT2 108 aa10.21□□□□□ -0.77
LSM1-203ENST00000520755 PSCAO43653 123 aa10.21□□□□□ -0.77
LSM1-203ENST00000520755 KRTAP26-1Q6PEX3 210 aa10.21□□□□□ -0.77
LSM1-203ENST00000520755 Q6ZN92 141 aa10.21□□□□□ -0.77
LSM1-203ENST00000520755 PACRGQ96M98 296 aaPredicted RBP10.21□□□□□ -0.77
LSM1-203ENST00000520755 HIST1H2BLQ99880 126 aa10.21□□□□□ -0.77
LSM1-203ENST00000520755 IGLV10-54A0A075B6I4 117 aa10.2□□□□□ -0.78
LSM1-203ENST00000520755 IGKV2D-24A0A075B6R9 120 aa10.2□□□□□ -0.78
LSM1-203ENST00000520755 TRAV13-1A0A0B4J241 112 aa10.2□□□□□ -0.78
LSM1-203ENST00000520755 UBE2D1P51668 147 aa10.2□□□□□ -0.78
LSM1-203ENST00000520755 MIAQ16674 131 aa10.2□□□□□ -0.78
LSM1-203ENST00000520755 RMI2Q96E14 147 aa10.2□□□□□ -0.78
LSM1-203ENST00000520755 VCX2Q9H322 139 aa10.2□□□□□ -0.78
LSM1-203ENST00000520755 HSPB8Q9UJY1 196 aa10.2□□□□□ -0.78
LSM1-203ENST00000520755 PMVKQ15126 192 aa10.19□□□□□ -0.78
LSM1-203ENST00000520755 PAPPA-AS1Q5QFB9 102 aa10.19□□□□□ -0.78
LSM1-203ENST00000520755 SPATA12Q7Z6I5 190 aa10.19□□□□□ -0.78
LSM1-203ENST00000520755 TM2D2Q9BX73 214 aa10.19□□□□□ -0.78
LSM1-203ENST00000520755 CST9LQ9H4G1 147 aa10.19□□□□□ -0.78
LSM1-203ENST00000520755 C2orf88Q9BSF0 95 aa10.18□□□□□ -0.78
LSM1-203ENST00000520755 C1orf43Q9BWL3 253 aa10.18□□□□□ -0.78
LSM1-203ENST00000520755 IGLV4-69A0A075B6H9 119 aa10.17□□□□□ -0.78
LSM1-203ENST00000520755 CCL25O15444 150 aa10.17□□□□□ -0.78
LSM1-203ENST00000520755 LINC00242Q5T6M2 205 aa10.17□□□□□ -0.78
LSM1-203ENST00000520755 FAM19A3Q7Z5A8 133 aa10.17□□□□□ -0.78
LSM1-203ENST00000520755 CHCHD10Q8WYQ3 142 aaPredicted RBP10.17□□□□□ -0.78
LSM1-203ENST00000520755 EPPK1P58107 5090 aaKnown RBP10.17□□□□□ -0.78
LSM1-203ENST00000520755 TRAV12-1A0A0B4J245 112 aa10.16□□□□□ -0.78
LSM1-203ENST00000520755 TRAV8-4A0A0B4J246 113 aa10.16□□□□□ -0.78
LSM1-203ENST00000520755 A0A0J9YXV3 536 aa10.16□□□□□ -0.78
LSM1-203ENST00000520755 C3orf79P0CE67 100 aa10.16□□□□□ -0.78
LSM1-203ENST00000520755 S100A2P29034 98 aa10.16□□□□□ -0.78
LSM1-203ENST00000520755 ODF1Q14990 250 aa10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 72.2 ms