RNA–Protein interactions for RNA: ENST00000518140.5

SLIT3-204, Transcript of slit guidance ligand 3, humanhuman

TSL 1 (best)

Gene SLIT3, Length 2,090 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIT3-204ENST00000518140 GAGE4Q13068 117 aa16.52■□□□□ 0.23
SLIT3-204ENST00000518140 GAGE5Q13069 117 aa16.52■□□□□ 0.23
SLIT3-204ENST00000518140 GAGE13Q4V321 117 aa16.52■□□□□ 0.23
SLIT3-204ENST00000518140 NHP2Q9NX24 153 aaKnown RBP16.51■□□□□ 0.23
SLIT3-204ENST00000518140 CHTOPQ9Y3Y2 248 aaKnown RBP16.51■□□□□ 0.23
SLIT3-204ENST00000518140 TRBV10-1A0A0K0K1A3 114 aa16.5■□□□□ 0.23
SLIT3-204ENST00000518140 CHCHD7Q9BUK0 85 aa16.5■□□□□ 0.23
SLIT3-204ENST00000518140 K7ERJ3 54 aa16.5■□□□□ 0.23
SLIT3-204ENST00000518140 COTL1Q14019 142 aa16.5■□□□□ 0.23
SLIT3-204ENST00000518140 PRSS29PA6NIE9 313 aa16.49■□□□□ 0.23
SLIT3-204ENST00000518140 A8MZ25 164 aa16.49■□□□□ 0.23
SLIT3-204ENST00000518140 PRB2P02812 416 aaPredicted RBP16.49■□□□□ 0.23
SLIT3-204ENST00000518140 RPL36AP83881 106 aaKnown RBP16.49■□□□□ 0.23
SLIT3-204ENST00000518140 RPL36ALQ969Q0 106 aaKnown RBP16.49■□□□□ 0.23
SLIT3-204ENST00000518140 RETNQ9HD89 108 aa16.49■□□□□ 0.23
SLIT3-204ENST00000518140 NBEAL1Q6ZS30 2694 aa16.49■□□□□ 0.23
SLIT3-204ENST00000518140 TRBV6-4A0A1B0GX49 114 aa16.49■□□□□ 0.23
SLIT3-204ENST00000518140 CELA1Q9UNI1 258 aa16.49■□□□□ 0.23
SLIT3-204ENST00000518140 MIFP14174 115 aa16.48■□□□□ 0.23
SLIT3-204ENST00000518140 UBE2D3P61077 147 aa16.48■□□□□ 0.23
SLIT3-204ENST00000518140 UBE2D2P62837 147 aa16.48■□□□□ 0.23
SLIT3-204ENST00000518140 CIDEAO60543 219 aa16.47■□□□□ 0.23
SLIT3-204ENST00000518140 CEMP1Q6PRD7 247 aaPredicted RBP16.47■□□□□ 0.23
SLIT3-204ENST00000518140 TIMM17AQ99595 171 aa16.47■□□□□ 0.23
SLIT3-204ENST00000518140 LYRM9A8MSI8 78 aa16.47■□□□□ 0.23
SLIT3-204ENST00000518140 IGKV2D-29A0A075B6S2 120 aaPredicted RBP16.46■□□□□ 0.23
SLIT3-204ENST00000518140 IGKV2-29A2NJV5 120 aaPredicted RBP16.46■□□□□ 0.23
SLIT3-204ENST00000518140 TMEM141Q96I45 108 aa16.46■□□□□ 0.23
SLIT3-204ENST00000518140 MYMXA0A1B0GTQ4 84 aa16.46■□□□□ 0.22
SLIT3-204ENST00000518140 E9PLD3 99 aa16.46■□□□□ 0.22
SLIT3-204ENST00000518140 FAM104AQ969W3 186 aa16.46■□□□□ 0.22
SLIT3-204ENST00000518140 LINC01549A6NIU2 74 aa16.45■□□□□ 0.22
SLIT3-204ENST00000518140 NTM-AS1Q6ZSK4 140 aa16.45■□□□□ 0.22
SLIT3-204ENST00000518140 HIST1H4GQ99525 98 aa16.45■□□□□ 0.22
SLIT3-204ENST00000518140 MGAM2Q2M2H8 2515 aa16.45■□□□□ 0.22
SLIT3-204ENST00000518140 IGLL5B9A064 214 aa16.44■□□□□ 0.22
SLIT3-204ENST00000518140 C12orf74Q32Q52 190 aa16.44■□□□□ 0.22
SLIT3-204ENST00000518140 DAZ4Q86SG3 579 aaKnown RBP16.42■□□□□ 0.22
SLIT3-204ENST00000518140 DAZ3Q9NR90 486 aaKnown RBP16.42■□□□□ 0.22
SLIT3-204ENST00000518140 IGLV4-3A0A075B6K6 122 aa16.42■□□□□ 0.22
SLIT3-204ENST00000518140 PMVKQ15126 192 aa16.42■□□□□ 0.22
SLIT3-204ENST00000518140 PRADC1Q9BSG0 188 aa16.41■□□□□ 0.22
SLIT3-204ENST00000518140 DAD1P61803 113 aa16.4■□□□□ 0.22
SLIT3-204ENST00000518140 CRYBA4P53673 196 aa16.39■□□□□ 0.21
SLIT3-204ENST00000518140 UBE2D4Q9Y2X8 147 aa16.39■□□□□ 0.21
SLIT3-204ENST00000518140 IGLV4-69A0A075B6H9 119 aa16.39■□□□□ 0.21
SLIT3-204ENST00000518140 A0A1B0GWB2 263 aa16.39■□□□□ 0.21
SLIT3-204ENST00000518140 RNASE13Q5GAN3 156 aaKnown RBP16.39■□□□□ 0.21
SLIT3-204ENST00000518140 PYGO1Q9Y3Y4 419 aa16.39■□□□□ 0.21
SLIT3-204ENST00000518140 LINC00694P0DN24 101 aa16.38■□□□□ 0.21
SLIT3-204ENST00000518140 SPART-AS1P0CW21 52 aa16.38■□□□□ 0.21
SLIT3-204ENST00000518140 TENM3Q9P273 2699 aa16.37■□□□□ 0.21
SLIT3-204ENST00000518140 GYPEP15421 78 aa16.36■□□□□ 0.21
SLIT3-204ENST00000518140 PRO0255Q9UI72 69 aa16.36■□□□□ 0.21
SLIT3-204ENST00000518140 C11orf86A6NJI1 115 aa16.36■□□□□ 0.21
SLIT3-204ENST00000518140 F8W1H4 67 aa16.35■□□□□ 0.21
SLIT3-204ENST00000518140 SBSPONQ8IVN8 264 aa16.35■□□□□ 0.21
SLIT3-204ENST00000518140 VCX2Q9H322 139 aa16.35■□□□□ 0.21
SLIT3-204ENST00000518140 RPL24P83731 157 aaKnown RBP16.34■□□□□ 0.21
SLIT3-204ENST00000518140 PAPPA-AS1Q5QFB9 102 aa16.34■□□□□ 0.21
SLIT3-204ENST00000518140 A0A0J9YY99 117 aa16.34■□□□□ 0.21
SLIT3-204ENST00000518140 K7EIL1 84 aa16.34■□□□□ 0.21
SLIT3-204ENST00000518140 VSIG2Q96IQ7 327 aa16.34■□□□□ 0.21
SLIT3-204ENST00000518140 SPANXA1Q9NS26 97 aa16.34■□□□□ 0.21
SLIT3-204ENST00000518140 ZNF815PA8K554 130 aa16.33■□□□□ 0.21
SLIT3-204ENST00000518140 Q6ZUT4 128 aa16.33■□□□□ 0.21
SLIT3-204ENST00000518140 AMELXQ99217 191 aa16.33■□□□□ 0.21
SLIT3-204ENST00000518140 GTSF1LQ9H1H1 148 aa16.33■□□□□ 0.21
SLIT3-204ENST00000518140 PAX4O43316 350 aa16.33■□□□□ 0.2
SLIT3-204ENST00000518140 TEX48A0A1B0GUV7 120 aa16.32■□□□□ 0.2
SLIT3-204ENST00000518140 ATP5G1P05496 136 aa16.31■□□□□ 0.2
SLIT3-204ENST00000518140 HTN3P15516 51 aa16.31■□□□□ 0.2
SLIT3-204ENST00000518140 A0A096LPF7 62 aa16.31■□□□□ 0.2
SLIT3-204ENST00000518140 A0A0J9YXV3 536 aa16.3■□□□□ 0.2
SLIT3-204ENST00000518140 F5H768 121 aa16.3■□□□□ 0.2
SLIT3-204ENST00000518140 HERVK_113P61574 105 aa16.3■□□□□ 0.2
SLIT3-204ENST00000518140 H3BMG7 143 aa16.29■□□□□ 0.2
SLIT3-204ENST00000518140 SCGB1D4Q6XE38 83 aa16.29■□□□□ 0.2
SLIT3-204ENST00000518140 ATP6V0E2Q8NHE4 81 aa16.29■□□□□ 0.2
SLIT3-204ENST00000518140 TMEM243Q9BU79 118 aa16.29■□□□□ 0.2
SLIT3-204ENST00000518140 TRAV26-1A0A087WT03 109 aa16.28■□□□□ 0.2
SLIT3-204ENST00000518140 TMEM238LA0A1B0GVL6 79 aa16.28■□□□□ 0.2
SLIT3-204ENST00000518140 A6NJY4 79 aa16.28■□□□□ 0.2
SLIT3-204ENST00000518140 WFDC2Q14508 124 aa16.28■□□□□ 0.2
SLIT3-204ENST00000518140 DEFB121Q5J5C9 76 aa16.28■□□□□ 0.2
SLIT3-204ENST00000518140 KPRPQ5T749 579 aaPredicted RBP16.28■□□□□ 0.2
SLIT3-204ENST00000518140 PLEKHB2Q96CS7 222 aa16.28■□□□□ 0.2
SLIT3-204ENST00000518140 TRBV6-8A0A0A6YYG3 113 aa16.28■□□□□ 0.2
SLIT3-204ENST00000518140 TIMM21Q9BVV7 248 aa16.28■□□□□ 0.2
SLIT3-204ENST00000518140 SPANXB1Q9NS25 103 aaPredicted RBP16.28■□□□□ 0.2
SLIT3-204ENST00000518140 DGAT2L7PQ6IED9 249 aa16.27■□□□□ 0.2
SLIT3-204ENST00000518140 MRAPQ8TCY5 172 aa16.26■□□□□ 0.19
SLIT3-204ENST00000518140 SRSF9Q13242 221 aaKnown RBP eCLIP16.26■□□□□ 0.19
SLIT3-204ENST00000518140 NFE4Q86UQ8 179 aa16.26■□□□□ 0.19
SLIT3-204ENST00000518140 A0A0J9YWU9 116 aa16.25■□□□□ 0.19
SLIT3-204ENST00000518140 MRPS36P82909 103 aaKnown RBP16.25■□□□□ 0.19
SLIT3-204ENST00000518140 GAGE6Q13070 117 aa16.25■□□□□ 0.19
SLIT3-204ENST00000518140 TMEM170BQ5T4T1 132 aa16.25■□□□□ 0.19
SLIT3-204ENST00000518140 UBE2D1P51668 147 aa16.25■□□□□ 0.19
SLIT3-204ENST00000518140 UBE2L6O14933 153 aa16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms