RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 LINC00614P0C842 121 aa19.83■□□□□ 0.76
LIMCH1-211ENST00000509638 Q6ZUT4 128 aa19.83■□□□□ 0.76
LIMCH1-211ENST00000509638 CDC42SE2Q9NRR3 84 aa19.83■□□□□ 0.76
LIMCH1-211ENST00000509638 RAB5BP61020 215 aa19.82■□□□□ 0.76
LIMCH1-211ENST00000509638 IGKV3OR2-268A0A0C4DH90 116 aa19.81■□□□□ 0.76
LIMCH1-211ENST00000509638 MIAQ16674 131 aa19.81■□□□□ 0.76
LIMCH1-211ENST00000509638 ZNF664Q8N3J9 261 aa19.81■□□□□ 0.76
LIMCH1-211ENST00000509638 RNASE13Q5GAN3 156 aaKnown RBP19.8■□□□□ 0.76
LIMCH1-211ENST00000509638 G0S2P27469 103 aa19.79■□□□□ 0.76
LIMCH1-211ENST00000509638 BAGE3Q86Y29 109 aa19.79■□□□□ 0.76
LIMCH1-211ENST00000509638 IGKV2D-24A0A075B6R9 120 aa19.78■□□□□ 0.76
LIMCH1-211ENST00000509638 TOMM6Q96B49 74 aa19.78■□□□□ 0.76
LIMCH1-211ENST00000509638 RMI2Q96E14 147 aa19.78■□□□□ 0.76
LIMCH1-211ENST00000509638 OPRPNQ99935 248 aaPredicted RBP19.78■□□□□ 0.76
LIMCH1-211ENST00000509638 C1orf43Q9BWL3 253 aa19.78■□□□□ 0.76
LIMCH1-211ENST00000509638 PYGO1Q9Y3Y4 419 aa19.78■□□□□ 0.76
LIMCH1-211ENST00000509638 DNAH17Q9UFH2 4485 aa19.77■□□□□ 0.76
LIMCH1-211ENST00000509638 FAT2Q9NYQ8 4349 aa19.76■□□□□ 0.75
LIMCH1-211ENST00000509638 IGLV10-54A0A075B6I4 117 aa19.76■□□□□ 0.75
LIMCH1-211ENST00000509638 PMCHL1Q16048 86 aa19.76■□□□□ 0.75
LIMCH1-211ENST00000509638 FAM104AQ969W3 186 aa19.76■□□□□ 0.75
LIMCH1-211ENST00000509638 PSCAO43653 123 aa19.75■□□□□ 0.75
LIMCH1-211ENST00000509638 MRPS36P82909 103 aaKnown RBP19.75■□□□□ 0.75
LIMCH1-211ENST00000509638 CHCHD1Q96BP2 118 aaKnown RBP19.75■□□□□ 0.75
LIMCH1-211ENST00000509638 TM2D2Q9BX73 214 aa19.75■□□□□ 0.75
LIMCH1-211ENST00000509638 IGLV4-3A0A075B6K6 122 aa19.74■□□□□ 0.75
LIMCH1-211ENST00000509638 HIST1H2BKO60814 126 aa19.74■□□□□ 0.75
LIMCH1-211ENST00000509638 HIST1H2BJP06899 126 aa19.74■□□□□ 0.75
LIMCH1-211ENST00000509638 HIST1H2BOP23527 126 aa19.74■□□□□ 0.75
LIMCH1-211ENST00000509638 HIST1H2BBP33778 126 aa19.74■□□□□ 0.75
LIMCH1-211ENST00000509638 HIST1H2BDP58876 126 aa19.74■□□□□ 0.75
LIMCH1-211ENST00000509638 HIST1H2BCP62807 126 aa19.74■□□□□ 0.75
LIMCH1-211ENST00000509638 HIST2H2BEQ16778 126 aa19.74■□□□□ 0.75
LIMCH1-211ENST00000509638 HIST2H2BFQ5QNW6 126 aaPredicted RBP19.74■□□□□ 0.75
LIMCH1-211ENST00000509638 HIST1H2BHQ93079 126 aa19.74■□□□□ 0.75
LIMCH1-211ENST00000509638 HIST1H2BNQ99877 126 aa19.74■□□□□ 0.75
LIMCH1-211ENST00000509638 HIST1H2BMQ99879 126 aa19.74■□□□□ 0.75
LIMCH1-211ENST00000509638 A0A096LNJ9 63 aa19.74■□□□□ 0.75
LIMCH1-211ENST00000509638 IGIPA6NJ69 53 aa19.73■□□□□ 0.75
LIMCH1-211ENST00000509638 COX11Q9Y6N1 276 aa19.73■□□□□ 0.75
LIMCH1-211ENST00000509638 TRAV8-4A0A0B4J246 113 aa19.72■□□□□ 0.75
LIMCH1-211ENST00000509638 HBDP02042 147 aa19.72■□□□□ 0.75
LIMCH1-211ENST00000509638 LINC00336Q6ZUF6 198 aa19.72■□□□□ 0.75
LIMCH1-211ENST00000509638 SERF1AO75920 110 aa19.71■□□□□ 0.75
LIMCH1-211ENST00000509638 TMEM141Q96I45 108 aa19.71■□□□□ 0.75
LIMCH1-211ENST00000509638 LINC01549A6NIU2 74 aa19.7■□□□□ 0.74
LIMCH1-211ENST00000509638 LINC00310P59036 64 aa19.7■□□□□ 0.74
LIMCH1-211ENST00000509638 TNP2Q05952 138 aa19.7■□□□□ 0.74
LIMCH1-211ENST00000509638 SCGB3A1Q96QR1 104 aa19.7■□□□□ 0.74
LIMCH1-211ENST00000509638 TIMM17AQ99595 171 aa19.7■□□□□ 0.74
LIMCH1-211ENST00000509638 PRSS29PA6NIE9 313 aa19.7■□□□□ 0.74
LIMCH1-211ENST00000509638 LINC00959A0A1B0GUT2 108 aa19.69■□□□□ 0.74
LIMCH1-211ENST00000509638 HSBP1O75506 76 aa19.69■□□□□ 0.74
LIMCH1-211ENST00000509638 Q6ZN92 141 aa19.69■□□□□ 0.74
LIMCH1-211ENST00000509638 ERASQ7Z444 233 aa19.69■□□□□ 0.74
LIMCH1-211ENST00000509638 C1orf196B1AJZ1 125 aa19.68■□□□□ 0.74
LIMCH1-211ENST00000509638 NPSP0C0P6 89 aa19.68■□□□□ 0.74
LIMCH1-211ENST00000509638 TRAV13-1A0A0B4J241 112 aa19.67■□□□□ 0.74
LIMCH1-211ENST00000509638 IFITM10A6NMD0 228 aa19.67■□□□□ 0.74
LIMCH1-211ENST00000509638 CHCHD10Q8WYQ3 142 aaPredicted RBP19.67■□□□□ 0.74
LIMCH1-211ENST00000509638 KRTAP26-1Q6PEX3 210 aa19.66■□□□□ 0.74
LIMCH1-211ENST00000509638 MAPKAPK5-AS1Q8N8E1 139 aa19.66■□□□□ 0.74
LIMCH1-211ENST00000509638 TEX43Q6ZNM6 134 aa19.66■□□□□ 0.74
LIMCH1-211ENST00000509638 SS18Q15532 418 aa19.65■□□□□ 0.74
LIMCH1-211ENST00000509638 CCL25O15444 150 aa19.64■□□□□ 0.73
LIMCH1-211ENST00000509638 XCL1P47992 114 aa19.64■□□□□ 0.73
LIMCH1-211ENST00000509638 ZC2HC1BQ5TFG8 222 aa19.64■□□□□ 0.73
LIMCH1-211ENST00000509638 LINC00173Q6ZV60 143 aa19.64■□□□□ 0.73
LIMCH1-211ENST00000509638 HECTD4Q9Y4D8 3996 aa19.64■□□□□ 0.73
LIMCH1-211ENST00000509638 PDZD11Q5EBL8 140 aa19.63■□□□□ 0.73
LIMCH1-211ENST00000509638 PAPPA-AS1Q5QFB9 102 aa19.63■□□□□ 0.73
LIMCH1-211ENST00000509638 FAM19A2Q8N3H0 131 aa19.63■□□□□ 0.73
LIMCH1-211ENST00000509638 VCX2Q9H322 139 aa19.63■□□□□ 0.73
LIMCH1-211ENST00000509638 GAGE12HA6NDE8 117 aa19.62■□□□□ 0.73
LIMCH1-211ENST00000509638 AMELXQ99217 191 aa19.62■□□□□ 0.73
LIMCH1-211ENST00000509638 C2orf88Q9BSF0 95 aa19.62■□□□□ 0.73
LIMCH1-211ENST00000509638 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP19.61■□□□□ 0.73
LIMCH1-211ENST00000509638 LECT2O14960 151 aa19.61■□□□□ 0.73
LIMCH1-211ENST00000509638 NUPR1O60356 82 aa19.61■□□□□ 0.73
LIMCH1-211ENST00000509638 BAALCQ8WXS3 180 aa19.61■□□□□ 0.73
LIMCH1-211ENST00000509638 A0A087WTM6 91 aa19.6■□□□□ 0.73
LIMCH1-211ENST00000509638 LRCOL1A6NCL2 159 aa19.6■□□□□ 0.73
LIMCH1-211ENST00000509638 WFDC2Q14508 124 aa19.59■□□□□ 0.73
LIMCH1-211ENST00000509638 PKD1P98161 4303 aa19.59■□□□□ 0.73
LIMCH1-211ENST00000509638 FOXI1Q12951 378 aa19.57■□□□□ 0.72
LIMCH1-211ENST00000509638 ATP5LO75964 103 aa19.56■□□□□ 0.72
LIMCH1-211ENST00000509638 UBE2D1P51668 147 aa19.56■□□□□ 0.72
LIMCH1-211ENST00000509638 CD164L2Q6UWJ8 174 aa19.56■□□□□ 0.72
LIMCH1-211ENST00000509638 DNAH11Q96DT5 4516 aa19.54■□□□□ 0.72
LIMCH1-211ENST00000509638 USP17L23D6RBM5 183 aa19.53■□□□□ 0.72
LIMCH1-211ENST00000509638 EREGO14944 169 aa19.53■□□□□ 0.72
LIMCH1-211ENST00000509638 NDUFA6P56556 154 aa19.53■□□□□ 0.72
LIMCH1-211ENST00000509638 A0A1B0GVY2 172 aa19.52■□□□□ 0.71
LIMCH1-211ENST00000509638 PMVKQ15126 192 aa19.52■□□□□ 0.71
LIMCH1-211ENST00000509638 COA6Q5JTJ3 125 aaKnown RBP19.52■□□□□ 0.71
LIMCH1-211ENST00000509638 LINC00242Q5T6M2 205 aa19.52■□□□□ 0.71
LIMCH1-211ENST00000509638 PKHD1P08F94 4074 aa19.51■□□□□ 0.71
LIMCH1-211ENST00000509638 CST9LQ9H4G1 147 aa19.51■□□□□ 0.71
LIMCH1-211ENST00000509638 LEPROTL1O95214 131 aa19.5■□□□□ 0.71
LIMCH1-211ENST00000509638 Q8N814 137 aa19.49■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 136.9 ms