RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 MYO7BQ6PIF6 2116 aa-0.15□□□□□ -2.43
HMGB1P28-201ENST00000507778 ZNF436-AS1Q8NC38 126 aaPredicted RBP-0.15□□□□□ -2.43
HMGB1P28-201ENST00000507778 PPP3R2Q96LZ3 170 aa-0.15□□□□□ -2.43
HMGB1P28-201ENST00000507778 AMELXQ99217 191 aa-0.15□□□□□ -2.43
HMGB1P28-201ENST00000507778 CHD9Q3L8U1 2897 aa-0.15□□□□□ -2.43
HMGB1P28-201ENST00000507778 DOPEY2Q9Y3R5 2298 aa-0.15□□□□□ -2.43
HMGB1P28-201ENST00000507778 KIF21AQ7Z4S6 1674 aa-0.15□□□□□ -2.43
HMGB1P28-201ENST00000507778 MBD5Q9P267 1494 aa-0.16□□□□□ -2.43
HMGB1P28-201ENST00000507778 FAT2Q9NYQ8 4349 aa-0.16□□□□□ -2.43
HMGB1P28-201ENST00000507778 PAPPAQ13219 1627 aa-0.16□□□□□ -2.43
HMGB1P28-201ENST00000507778 FAM208BQ5VWN6 2430 aa-0.16□□□□□ -2.43
HMGB1P28-201ENST00000507778 ZANQ9Y493 2812 aa-0.16□□□□□ -2.43
HMGB1P28-201ENST00000507778 STAB1Q9NY15 2570 aa-0.16□□□□□ -2.43
HMGB1P28-201ENST00000507778 BCE1O60756 84 aa-0.16□□□□□ -2.44
HMGB1P28-201ENST00000507778 KRTAP19-7Q3SYF9 63 aa-0.16□□□□□ -2.44
HMGB1P28-201ENST00000507778 Q8IZM0 81 aa-0.16□□□□□ -2.44
HMGB1P28-201ENST00000507778 NUP188Q5SRE5 1749 aa-0.16□□□□□ -2.44
HMGB1P28-201ENST00000507778 FLNAP21333 2647 aaKnown RBP-0.17□□□□□ -2.44
HMGB1P28-201ENST00000507778 CUL7Q14999 1698 aa-0.17□□□□□ -2.44
HMGB1P28-201ENST00000507778 ROBO1Q9Y6N7 1651 aa-0.17□□□□□ -2.44
HMGB1P28-201ENST00000507778 PCLOQ9Y6V0 5065 aa-0.17□□□□□ -2.44
HMGB1P28-201ENST00000507778 FXYD6-FXYD2A0A087WZ82 144 aa-0.17□□□□□ -2.44
HMGB1P28-201ENST00000507778 FGF7P21781 194 aa-0.17□□□□□ -2.44
HMGB1P28-201ENST00000507778 ARHGEF5Q12774 1597 aa-0.17□□□□□ -2.44
HMGB1P28-201ENST00000507778 DEFB109BQ30KR1 87 aa-0.17□□□□□ -2.44
HMGB1P28-201ENST00000507778 C1orf54Q8WWF1 131 aa-0.17□□□□□ -2.44
HMGB1P28-201ENST00000507778 NDUFA4L2Q9NRX3 87 aa-0.17□□□□□ -2.44
HMGB1P28-201ENST00000507778 FMN2Q9NZ56 1722 aa-0.17□□□□□ -2.44
HMGB1P28-201ENST00000507778 PLCE1Q9P212 2302 aa-0.17□□□□□ -2.44
HMGB1P28-201ENST00000507778 SRRM2Q9UQ35 2752 aaKnown RBP-0.17□□□□□ -2.44
HMGB1P28-201ENST00000507778 ZNF292O60281 2723 aa-0.18□□□□□ -2.44
HMGB1P28-201ENST00000507778 DCHS2Q6V1P9 2916 aa-0.18□□□□□ -2.44
HMGB1P28-201ENST00000507778 CPSF1Q10570 1443 aaKnown RBP-0.18□□□□□ -2.44
HMGB1P28-201ENST00000507778 SPRR2DP22532 72 aa-0.18□□□□□ -2.44
HMGB1P28-201ENST00000507778 TMEM170BQ5T4T1 132 aa-0.18□□□□□ -2.44
HMGB1P28-201ENST00000507778 TOP2BQ02880 1626 aa-0.18□□□□□ -2.44
HMGB1P28-201ENST00000507778 PTPRQQ9UMZ3 2332 aa-0.18□□□□□ -2.44
HMGB1P28-201ENST00000507778 BCL9LQ86UU0 1499 aa-0.18□□□□□ -2.44
HMGB1P28-201ENST00000507778 MARF1Q9Y4F3 1742 aaKnown RBP-0.18□□□□□ -2.44
HMGB1P28-201ENST00000507778 VWFP04275 2813 aa-0.19□□□□□ -2.44
HMGB1P28-201ENST00000507778 ANKRD36A6QL64 1941 aa-0.19□□□□□ -2.44
HMGB1P28-201ENST00000507778 PTPN13Q12923 2485 aa-0.19□□□□□ -2.44
HMGB1P28-201ENST00000507778 ERCC6L2Q5T890 1561 aa-0.19□□□□□ -2.44
HMGB1P28-201ENST00000507778 AKAP6Q13023 2319 aa-0.19□□□□□ -2.44
HMGB1P28-201ENST00000507778 RGPD2P0DJD1 1756 aa-0.19□□□□□ -2.44
HMGB1P28-201ENST00000507778 COL14A1Q05707 1796 aaKnown RBP-0.19□□□□□ -2.44
HMGB1P28-201ENST00000507778 C2CD3Q4AC94 2353 aa-0.19□□□□□ -2.44
HMGB1P28-201ENST00000507778 CC2D2AQ9P2K1 1620 aa-0.19□□□□□ -2.44
HMGB1P28-201ENST00000507778 USF3Q68DE3 2245 aa-0.19□□□□□ -2.44
HMGB1P28-201ENST00000507778 APOC2P02655 101 aa-0.19□□□□□ -2.44
HMGB1P28-201ENST00000507778 CATR1Q13166 79 aa-0.19□□□□□ -2.44
HMGB1P28-201ENST00000507778 Q5VSD8 79 aa-0.19□□□□□ -2.44
HMGB1P28-201ENST00000507778 BAGE2Q86Y30 109 aa-0.19□□□□□ -2.44
HMGB1P28-201ENST00000507778 MGST2Q99735 147 aa-0.19□□□□□ -2.44
HMGB1P28-201ENST00000507778 FXYD6Q9H0Q3 95 aa-0.19□□□□□ -2.44
HMGB1P28-201ENST00000507778 DYNLRB1Q9NP97 96 aa-0.19□□□□□ -2.44
HMGB1P28-201ENST00000507778 BSNQ9UPA5 3926 aa-0.19□□□□□ -2.44
HMGB1P28-201ENST00000507778 COL6A3P12111 3177 aa-0.19□□□□□ -2.44
HMGB1P28-201ENST00000507778 PAPPA2Q9BXP8 1791 aa-0.19□□□□□ -2.44
HMGB1P28-201ENST00000507778 PDZD2O15018 2839 aa-0.19□□□□□ -2.44
HMGB1P28-201ENST00000507778 PKD1L1Q8TDX9 2849 aa-0.19□□□□□ -2.44
HMGB1P28-201ENST00000507778 KMT2CQ8NEZ4 4911 aaKnown RBP-0.2□□□□□ -2.44
HMGB1P28-201ENST00000507778 C10orf71Q711Q0 1435 aa-0.2□□□□□ -2.44
HMGB1P28-201ENST00000507778 CSPG4Q6UVK1 2322 aa-0.2□□□□□ -2.44
HMGB1P28-201ENST00000507778 RIMS1Q86UR5 1692 aaKnown RBP-0.2□□□□□ -2.44
HMGB1P28-201ENST00000507778 LRRC37A2A6NM11 1700 aa-0.2□□□□□ -2.44
HMGB1P28-201ENST00000507778 CHD1O14646 1710 aa-0.2□□□□□ -2.44
HMGB1P28-201ENST00000507778 SVEP1Q4LDE5 3571 aa-0.2□□□□□ -2.44
HMGB1P28-201ENST00000507778 TRBV7-3A0A075B6L6 115 aa-0.2□□□□□ -2.44
HMGB1P28-201ENST00000507778 F8VRH5 84 aa-0.2□□□□□ -2.44
HMGB1P28-201ENST00000507778 K7EQZ3 153 aa-0.2□□□□□ -2.44
HMGB1P28-201ENST00000507778 UQCR11O14957 56 aa-0.2□□□□□ -2.44
HMGB1P28-201ENST00000507778 C8orf59Q8N0T1 100 aaPredicted RBP-0.2□□□□□ -2.44
HMGB1P28-201ENST00000507778 TSLPQ969D9 159 aa-0.2□□□□□ -2.44
HMGB1P28-201ENST00000507778 SPANXDQ9BXN6 97 aa-0.2□□□□□ -2.44
HMGB1P28-201ENST00000507778 TP53AIP1Q9HCN2 124 aa-0.2□□□□□ -2.44
HMGB1P28-201ENST00000507778 ARHGEF12Q9NZN5 1544 aa-0.2□□□□□ -2.44
HMGB1P28-201ENST00000507778 URB1O60287 2271 aaKnown RBP-0.2□□□□□ -2.44
HMGB1P28-201ENST00000507778 PKDREJQ9NTG1 2253 aa-0.2□□□□□ -2.44
HMGB1P28-201ENST00000507778 TENM2Q9NT68 2774 aa-0.2□□□□□ -2.44
HMGB1P28-201ENST00000507778 FLGP20930 4061 aaPredicted RBP-0.2□□□□□ -2.44
HMGB1P28-201ENST00000507778 KIAA0556O60303 1618 aa-0.2□□□□□ -2.44
HMGB1P28-201ENST00000507778 CHD6Q8TD26 2715 aa-0.21□□□□□ -2.44
HMGB1P28-201ENST00000507778 MAP1AP78559 2803 aaPredicted RBP-0.21□□□□□ -2.44
HMGB1P28-201ENST00000507778 HMGXB3Q12766 1538 aa-0.21□□□□□ -2.44
HMGB1P28-201ENST00000507778 LOC100130705A0A1B0GUX0 176 aa-0.21□□□□□ -2.44
HMGB1P28-201ENST00000507778 APOC3P02656 99 aa-0.21□□□□□ -2.44
HMGB1P28-201ENST00000507778 SPRR1AP35321 89 aa-0.21□□□□□ -2.44
HMGB1P28-201ENST00000507778 TPPP2P59282 170 aa-0.21□□□□□ -2.44
HMGB1P28-201ENST00000507778 KRTAP19-8Q3LI54 63 aa-0.21□□□□□ -2.44
HMGB1P28-201ENST00000507778 QRICH2Q9H0J4 1663 aa-0.21□□□□□ -2.44
HMGB1P28-201ENST00000507778 MON2Q7Z3U7 1717 aa-0.21□□□□□ -2.44
HMGB1P28-201ENST00000507778 ABCA3Q99758 1704 aa-0.21□□□□□ -2.44
HMGB1P28-201ENST00000507778 PDCD11Q14690 1871 aaKnown RBP-0.22□□□□□ -2.44
HMGB1P28-201ENST00000507778 LOC730098B7Z3J9 87 aa-0.22□□□□□ -2.44
HMGB1P28-201ENST00000507778 IFNGP01579 166 aa-0.22□□□□□ -2.44
HMGB1P28-201ENST00000507778 KLK9Q2XQG4 91 aa-0.22□□□□□ -2.44
HMGB1P28-201ENST00000507778 Q6JHZ5 121 aa-0.22□□□□□ -2.44
HMGB1P28-201ENST00000507778 LINC00472Q9H8W2 130 aa-0.22□□□□□ -2.44
HMGB1P28-201ENST00000507778 MYOM1P52179 1685 aa-0.22□□□□□ -2.44
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms