RNA–Protein interactions for RNA: ENST00000489180.6

NPHP4-209, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 5,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-209ENST00000489180 LINC00526Q96FQ7 95 aa13.04□□□□□ -0.32
NPHP4-209ENST00000489180 LYRM9A8MSI8 78 aa13.03□□□□□ -0.32
NPHP4-209ENST00000489180 SPG11Q96JI7 2443 aa13.03□□□□□ -0.32
NPHP4-209ENST00000489180 FAM236DA0A1B0GTK5 79 aa13.03□□□□□ -0.32
NPHP4-209ENST00000489180 FAM236CP0DP71 79 aa13.03□□□□□ -0.32
NPHP4-209ENST00000489180 WNK1Q9H4A3 2382 aa13.03□□□□□ -0.32
NPHP4-209ENST00000489180 LOC100131303A0A0U1RQF7 123 aa13.02□□□□□ -0.32
NPHP4-209ENST00000489180 C18orf65Q6ZTR6 163 aa13.02□□□□□ -0.32
NPHP4-209ENST00000489180 FAM19A5Q7Z5A7 132 aaPredicted RBP13.02□□□□□ -0.32
NPHP4-209ENST00000489180 SPTSSBQ8NFR3 76 aa13.02□□□□□ -0.32
NPHP4-209ENST00000489180 PRR14LQ5THK1 2151 aa13.02□□□□□ -0.33
NPHP4-209ENST00000489180 KLK5Q9Y337 293 aaPredicted RBP13.02□□□□□ -0.33
NPHP4-209ENST00000489180 C11orf71Q6IPW1 123 aa13.02□□□□□ -0.33
NPHP4-209ENST00000489180 Q6ZSV7 163 aa13.02□□□□□ -0.33
NPHP4-209ENST00000489180 BBC3Q96PG8 261 aaPredicted RBP13.01□□□□□ -0.33
NPHP4-209ENST00000489180 WFDC10AQ9H1F0 79 aa13□□□□□ -0.33
NPHP4-209ENST00000489180 DEFB131BA0A096LNP1 70 aa13□□□□□ -0.33
NPHP4-209ENST00000489180 PRORYQ9H606 182 aa13□□□□□ -0.33
NPHP4-209ENST00000489180 C3orf84H3BNL1 204 aa13□□□□□ -0.33
NPHP4-209ENST00000489180 ANKHD1Q8IWZ3 2542 aaKnown RBP13□□□□□ -0.33
NPHP4-209ENST00000489180 SMIM9A6NGZ8 99 aa12.99□□□□□ -0.33
NPHP4-209ENST00000489180 WFDC10BQ8IUB3 73 aa12.99□□□□□ -0.33
NPHP4-209ENST00000489180 PLXNB1O43157 2135 aa12.99□□□□□ -0.33
NPHP4-209ENST00000489180 FSTL3O95633 263 aa12.99□□□□□ -0.33
NPHP4-209ENST00000489180 TRBV6-5A0A0K0K1A5 114 aa12.99□□□□□ -0.33
NPHP4-209ENST00000489180 TRBV6-4A0A1B0GX49 114 aa12.99□□□□□ -0.33
NPHP4-209ENST00000489180 C1orf158Q8N1D5 194 aa12.99□□□□□ -0.33
NPHP4-209ENST00000489180 PYGO1Q9Y3Y4 419 aa12.99□□□□□ -0.33
NPHP4-209ENST00000489180 ACACBO00763 2458 aa12.99□□□□□ -0.33
NPHP4-209ENST00000489180 UBE2D4Q9Y2X8 147 aa12.98□□□□□ -0.33
NPHP4-209ENST00000489180 IGKV2-28A0A075B6P5 120 aa12.98□□□□□ -0.33
NPHP4-209ENST00000489180 A0A087WZ39 114 aa12.98□□□□□ -0.33
NPHP4-209ENST00000489180 IGKV2D-28P01615 120 aa12.98□□□□□ -0.33
NPHP4-209ENST00000489180 LINC00310P59036 64 aa12.98□□□□□ -0.33
NPHP4-209ENST00000489180 Q8N6K4 173 aa12.98□□□□□ -0.33
NPHP4-209ENST00000489180 CCKP06307 115 aa12.97□□□□□ -0.33
NPHP4-209ENST00000489180 INAFM1C9JVW0 142 aa12.96□□□□□ -0.33
NPHP4-209ENST00000489180 SNURFQ9Y675 71 aa12.96□□□□□ -0.33
NPHP4-209ENST00000489180 IGLV2-33A0A075B6J2 118 aaPredicted RBP12.96□□□□□ -0.34
NPHP4-209ENST00000489180 LRCOL1A6NCL2 159 aa12.96□□□□□ -0.34
NPHP4-209ENST00000489180 ATP5EP2Q5VTU8 51 aa12.96□□□□□ -0.34
NPHP4-209ENST00000489180 ZNF702PQ9H963 129 aa12.96□□□□□ -0.34
NPHP4-209ENST00000489180 LRRC75A-AS1Q8N1F1 130 aa12.96□□□□□ -0.34
NPHP4-209ENST00000489180 SRCAPQ6ZRS2 3230 aa12.95□□□□□ -0.34
NPHP4-209ENST00000489180 CCDC179H3BU77 68 aa12.95□□□□□ -0.34
NPHP4-209ENST00000489180 XGP55808 180 aa12.95□□□□□ -0.34
NPHP4-209ENST00000489180 A0A0U1RQV1 116 aa12.94□□□□□ -0.34
NPHP4-209ENST00000489180 POLR2KP53803 58 aaKnown RBP12.94□□□□□ -0.34
NPHP4-209ENST00000489180 KLLNB2CW77 178 aa12.94□□□□□ -0.34
NPHP4-209ENST00000489180 LST1O00453 97 aa12.94□□□□□ -0.34
NPHP4-209ENST00000489180 SMIM11BQ8TCY0 68 aa12.94□□□□□ -0.34
NPHP4-209ENST00000489180 A0A0J9YWU9 116 aa12.94□□□□□ -0.34
NPHP4-209ENST00000489180 NOTCH2Q04721 2471 aa12.94□□□□□ -0.34
NPHP4-209ENST00000489180 EDN2P20800 178 aa12.93□□□□□ -0.34
NPHP4-209ENST00000489180 URB1-AS1Q96HZ7 61 aa12.93□□□□□ -0.34
NPHP4-209ENST00000489180 Q6ZQY7 126 aa12.93□□□□□ -0.34
NPHP4-209ENST00000489180 SEC61GP60059 68 aa12.93□□□□□ -0.34
NPHP4-209ENST00000489180 CSPG4Q6UVK1 2322 aa12.93□□□□□ -0.34
NPHP4-209ENST00000489180 C14orf177Q52M58 125 aa12.93□□□□□ -0.34
NPHP4-209ENST00000489180 POM121L12Q8N7R1 296 aa12.93□□□□□ -0.34
NPHP4-209ENST00000489180 TIMM17BO60830 172 aa12.93□□□□□ -0.34
NPHP4-209ENST00000489180 C9orf85Q96MD7 179 aa12.93□□□□□ -0.34
NPHP4-209ENST00000489180 HIVEP2P31629 2446 aa12.92□□□□□ -0.34
NPHP4-209ENST00000489180 UBE2D1P51668 147 aa12.92□□□□□ -0.34
NPHP4-209ENST00000489180 USP17L23D6RBM5 183 aa12.92□□□□□ -0.34
NPHP4-209ENST00000489180 SYCNQ0VAF6 134 aa12.92□□□□□ -0.34
NPHP4-209ENST00000489180 HCFC1P51610 2035 aa12.92□□□□□ -0.34
NPHP4-209ENST00000489180 LINC00959A0A1B0GUT2 108 aa12.91□□□□□ -0.34
NPHP4-209ENST00000489180 CUL9Q8IWT3 2517 aa12.91□□□□□ -0.34
NPHP4-209ENST00000489180 PPDPFQ9H3Y8 114 aa12.9□□□□□ -0.34
NPHP4-209ENST00000489180 PSMG3-AS1Q96PY0 264 aa12.9□□□□□ -0.34
NPHP4-209ENST00000489180 MIFP14174 115 aa12.9□□□□□ -0.35
NPHP4-209ENST00000489180 NDUFA7O95182 113 aa12.89□□□□□ -0.35
NPHP4-209ENST00000489180 CD164L2Q6UWJ8 174 aa12.89□□□□□ -0.35
NPHP4-209ENST00000489180 NDUFC2-KCTD14E9PQ53 114 aa12.89□□□□□ -0.35
NPHP4-209ENST00000489180 HILS1P60008 231 aa12.89□□□□□ -0.35
NPHP4-209ENST00000489180 CASC2Q6XLA1 102 aa12.88□□□□□ -0.35
NPHP4-209ENST00000489180 SERP2Q8N6R1 65 aa12.88□□□□□ -0.35
NPHP4-209ENST00000489180 CLUHP3Q96NS8 147 aa12.88□□□□□ -0.35
NPHP4-209ENST00000489180 DSCAMO60469 2012 aa12.88□□□□□ -0.35
NPHP4-209ENST00000489180 IGLV1-40P01703 118 aa12.87□□□□□ -0.35
NPHP4-209ENST00000489180 PRR4Q16378 134 aa12.87□□□□□ -0.35
NPHP4-209ENST00000489180 WFDC13Q8IUB5 93 aa12.87□□□□□ -0.35
NPHP4-209ENST00000489180 RPL37AP8A6NKH3 93 aa12.87□□□□□ -0.35
NPHP4-209ENST00000489180 CDSNQ15517 529 aa12.86□□□□□ -0.35
NPHP4-209ENST00000489180 IGIPA6NJ69 53 aa12.86□□□□□ -0.35
NPHP4-209ENST00000489180 ATRXP46100 2492 aa12.85□□□□□ -0.35
NPHP4-209ENST00000489180 MRPS36P82909 103 aaKnown RBP12.85□□□□□ -0.35
NPHP4-209ENST00000489180 CRIP2P52943 208 aaPredicted RBP12.85□□□□□ -0.35
NPHP4-209ENST00000489180 COL4A4P53420 1690 aaPredicted RBP12.85□□□□□ -0.35
NPHP4-209ENST00000489180 HRCT1Q6UXD1 115 aa12.85□□□□□ -0.35
NPHP4-209ENST00000489180 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP12.85□□□□□ -0.35
NPHP4-209ENST00000489180 ATG2AQ2TAZ0 1938 aa12.85□□□□□ -0.35
NPHP4-209ENST00000489180 CNFNQ9BYD5 112 aa12.84□□□□□ -0.35
NPHP4-209ENST00000489180 OTOGLQ3ZCN5 2332 aa12.84□□□□□ -0.35
NPHP4-209ENST00000489180 SORL1Q92673 2214 aa12.84□□□□□ -0.35
NPHP4-209ENST00000489180 MUC22E2RYF6 1773 aaPredicted RBP12.84□□□□□ -0.35
NPHP4-209ENST00000489180 LINC01006Q8NI28 216 aa12.84□□□□□ -0.35
NPHP4-209ENST00000489180 FAM240AA0A1B0GVK7 77 aa12.83□□□□□ -0.36
NPHP4-209ENST00000489180 M0R378 163 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 99.9 ms