RNA–Protein interactions for RNA: ENST00000488494.5

ITGB1-215, Transcript of integrin subunit beta 1, humanhuman

TSL 4

Gene ITGB1, Length 540 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGB1-215ENST00000488494 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.42□□□□□ -0.58
ITGB1-215ENST00000488494 VCYO14598 125 aa11.41□□□□□ -0.58
ITGB1-215ENST00000488494 HBBP68871 147 aa11.41□□□□□ -0.58
ITGB1-215ENST00000488494 HIGD2BQ4VC39 106 aa11.41□□□□□ -0.58
ITGB1-215ENST00000488494 MRPL52Q86TS9 123 aaKnown RBP11.41□□□□□ -0.58
ITGB1-215ENST00000488494 PANO1I0J062 215 aa11.4□□□□□ -0.58
ITGB1-215ENST00000488494 SLPIP03973 132 aa11.4□□□□□ -0.58
ITGB1-215ENST00000488494 XCL1P47992 114 aa11.4□□□□□ -0.58
ITGB1-215ENST00000488494 FOXI1Q12951 378 aa11.4□□□□□ -0.58
ITGB1-215ENST00000488494 CFAP161Q6P656 301 aa11.4□□□□□ -0.58
ITGB1-215ENST00000488494 SDIM1Q6ZPB5 146 aa11.4□□□□□ -0.58
ITGB1-215ENST00000488494 IGHV3-64A0A075B6Q5 118 aa11.39□□□□□ -0.59
ITGB1-215ENST00000488494 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.39□□□□□ -0.59
ITGB1-215ENST00000488494 LINC00959A0A1B0GUT2 108 aa11.39□□□□□ -0.59
ITGB1-215ENST00000488494 A0A1B0GXF2 115 aa11.39□□□□□ -0.59
ITGB1-215ENST00000488494 PPP1R2P9O14990 202 aa11.39□□□□□ -0.59
ITGB1-215ENST00000488494 CCL25O15444 150 aa11.39□□□□□ -0.59
ITGB1-215ENST00000488494 KIR2DL4Q99706 377 aa11.39□□□□□ -0.59
ITGB1-215ENST00000488494 S100A8P05109 93 aa11.38□□□□□ -0.59
ITGB1-215ENST00000488494 CKS2P33552 79 aa11.38□□□□□ -0.59
ITGB1-215ENST00000488494 RAB14P61106 215 aa11.38□□□□□ -0.59
ITGB1-215ENST00000488494 LINC00862A6NCI5 91 aa11.37□□□□□ -0.59
ITGB1-215ENST00000488494 D6R8Y8 96 aa11.37□□□□□ -0.59
ITGB1-215ENST00000488494 F8W036 122 aa11.37□□□□□ -0.59
ITGB1-215ENST00000488494 ZNF664Q8N3J9 261 aa11.37□□□□□ -0.59
ITGB1-215ENST00000488494 CDC42SE2Q9NRR3 84 aa11.37□□□□□ -0.59
ITGB1-215ENST00000488494 GVQW2A0A096LPI5 108 aaPredicted RBP11.36□□□□□ -0.59
ITGB1-215ENST00000488494 KRTAP10-4P60372 401 aaPredicted RBP11.36□□□□□ -0.59
ITGB1-215ENST00000488494 C20orf78Q9BR46 151 aa11.36□□□□□ -0.59
ITGB1-215ENST00000488494 TRBV24-1A0A075B6N3 115 aa11.35□□□□□ -0.59
ITGB1-215ENST00000488494 TNFRSF6BO95407 300 aa11.35□□□□□ -0.59
ITGB1-215ENST00000488494 CHTF8P0CG12 524 aa11.35□□□□□ -0.59
ITGB1-215ENST00000488494 SS18Q15532 418 aa11.35□□□□□ -0.59
ITGB1-215ENST00000488494 RNASE13Q5GAN3 156 aaKnown RBP11.35□□□□□ -0.59
ITGB1-215ENST00000488494 SMIM2Q9BVW6 85 aa11.35□□□□□ -0.59
ITGB1-215ENST00000488494 UBE2D4Q9Y2X8 147 aa11.35□□□□□ -0.59
ITGB1-215ENST00000488494 NPYP01303 97 aa11.34□□□□□ -0.59
ITGB1-215ENST00000488494 RPL32P62910 135 aaKnown RBP11.34□□□□□ -0.59
ITGB1-215ENST00000488494 SMAGPQ0VAQ4 97 aa11.34□□□□□ -0.59
ITGB1-215ENST00000488494 PNRC1Q12796 327 aaPredicted RBP11.34□□□□□ -0.59
ITGB1-215ENST00000488494 CIRBPQ14011 172 aaKnown RBP11.34□□□□□ -0.59
ITGB1-215ENST00000488494 ATP5L2Q7Z4Y8 100 aa11.34□□□□□ -0.59
ITGB1-215ENST00000488494 RPL37AP61513 92 aaKnown RBP11.33□□□□□ -0.6
ITGB1-215ENST00000488494 Q6ZUT4 128 aa11.33□□□□□ -0.6
ITGB1-215ENST00000488494 SPACA4Q8TDM5 124 aa11.33□□□□□ -0.6
ITGB1-215ENST00000488494 CSDC2Q9Y534 153 aaKnown RBP11.33□□□□□ -0.6
ITGB1-215ENST00000488494 IGHV1-58A0A0C4DH39 117 aa11.32□□□□□ -0.6
ITGB1-215ENST00000488494 CD164L2Q6UWJ8 174 aa11.32□□□□□ -0.6
ITGB1-215ENST00000488494 TCAPO15273 167 aa11.31□□□□□ -0.6
ITGB1-215ENST00000488494 PPBPP02775 128 aa11.31□□□□□ -0.6
ITGB1-215ENST00000488494 TMEM18Q96B42 140 aa11.31□□□□□ -0.6
ITGB1-215ENST00000488494 PHOX2AO14813 284 aa11.3□□□□□ -0.6
ITGB1-215ENST00000488494 MT-ND4LP03901 98 aa11.3□□□□□ -0.6
ITGB1-215ENST00000488494 RPL39P62891 51 aaKnown RBP11.3□□□□□ -0.6
ITGB1-215ENST00000488494 COX6A2Q02221 97 aa11.3□□□□□ -0.6
ITGB1-215ENST00000488494 CLLU1Q5K131 121 aa11.3□□□□□ -0.6
ITGB1-215ENST00000488494 ORMDL3Q8N138 153 aa11.3□□□□□ -0.6
ITGB1-215ENST00000488494 LINC00526Q96FQ7 95 aa11.3□□□□□ -0.6
ITGB1-215ENST00000488494 TIMM21Q9BVV7 248 aa11.3□□□□□ -0.6
ITGB1-215ENST00000488494 TRAV13-1A0A0B4J241 112 aa11.29□□□□□ -0.6
ITGB1-215ENST00000488494 J3QL48 77 aa11.29□□□□□ -0.6
ITGB1-215ENST00000488494 DPH3Q96FX2 82 aa11.29□□□□□ -0.6
ITGB1-215ENST00000488494 A0A087WYN8 130 aa11.28□□□□□ -0.6
ITGB1-215ENST00000488494 C1orf196B1AJZ1 125 aa11.28□□□□□ -0.6
ITGB1-215ENST00000488494 PRSS3P2Q8NHM4 247 aa11.28□□□□□ -0.6
ITGB1-215ENST00000488494 ANAPC16Q96DE5 110 aa11.28□□□□□ -0.6
ITGB1-215ENST00000488494 PRELID3AQ96N28 172 aa11.28□□□□□ -0.6
ITGB1-215ENST00000488494 IGKV2-24A0A0C4DH68 120 aa11.27□□□□□ -0.61
ITGB1-215ENST00000488494 COX7A2LO14548 114 aa11.27□□□□□ -0.61
ITGB1-215ENST00000488494 LCE2DQ5TA82 110 aaPredicted RBP11.27□□□□□ -0.61
ITGB1-215ENST00000488494 TMEM136Q6ZRR5 245 aa11.27□□□□□ -0.61
ITGB1-215ENST00000488494 CARD19Q96LW7 228 aa11.27□□□□□ -0.61
ITGB1-215ENST00000488494 PKHD1L1Q86WI1 4243 aa11.27□□□□□ -0.61
ITGB1-215ENST00000488494 MALP21145 153 aa11.26□□□□□ -0.61
ITGB1-215ENST00000488494 SPANXA1Q9NS26 97 aa11.26□□□□□ -0.61
ITGB1-215ENST00000488494 A0A096LNI7 61 aa11.25□□□□□ -0.61
ITGB1-215ENST00000488494 KRTAP29-1A8MX34 341 aaPredicted RBP11.25□□□□□ -0.61
ITGB1-215ENST00000488494 ZNF561-AS1K7EIQ3 104 aa11.25□□□□□ -0.61
ITGB1-215ENST00000488494 MAJINQ3KP22 176 aa11.25□□□□□ -0.61
ITGB1-215ENST00000488494 PLAC8Q9NZF1 115 aa11.25□□□□□ -0.61
ITGB1-215ENST00000488494 LRP1Q07954 4544 aaKnown RBP11.24□□□□□ -0.61
ITGB1-215ENST00000488494 ADCYAP1P18509 176 aa11.24□□□□□ -0.61
ITGB1-215ENST00000488494 RAB5AP20339 215 aa11.24□□□□□ -0.61
ITGB1-215ENST00000488494 HNRNPA3P51991 378 aaKnown RBP11.24□□□□□ -0.61
ITGB1-215ENST00000488494 IFITM2Q01629 132 aa11.24□□□□□ -0.61
ITGB1-215ENST00000488494 FAM104AQ969W3 186 aa11.24□□□□□ -0.61
ITGB1-215ENST00000488494 OPRPNQ99935 248 aaPredicted RBP11.24□□□□□ -0.61
ITGB1-215ENST00000488494 SYCNQ0VAF6 134 aa11.23□□□□□ -0.61
ITGB1-215ENST00000488494 C5orf38Q86SI9 138 aa11.23□□□□□ -0.61
ITGB1-215ENST00000488494 FAT3Q8TDW7 4589 aa11.22□□□□□ -0.61
ITGB1-215ENST00000488494 IGLV4-69A0A075B6H9 119 aa11.22□□□□□ -0.61
ITGB1-215ENST00000488494 IFITM10A6NMD0 228 aa11.22□□□□□ -0.61
ITGB1-215ENST00000488494 MRPS36P82909 103 aaKnown RBP11.22□□□□□ -0.61
ITGB1-215ENST00000488494 UQCC3Q6UW78 93 aa11.22□□□□□ -0.61
ITGB1-215ENST00000488494 MAP1LC3AQ9H492 121 aa11.22□□□□□ -0.61
ITGB1-215ENST00000488494 PKIGQ9Y2B9 76 aa11.22□□□□□ -0.61
ITGB1-215ENST00000488494 LAMTOR2Q9Y2Q5 125 aa11.22□□□□□ -0.61
ITGB1-215ENST00000488494 LOC389332A0A1B0GUA5 103 aa11.21□□□□□ -0.61
ITGB1-215ENST00000488494 STPG4Q8N801 248 aa11.21□□□□□ -0.61
ITGB1-215ENST00000488494 TMEM218A2RU14 115 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 84.1 ms