RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 H7C423 109 aa11.63□□□□□ -0.55
VIM-205ENST00000485947 ATP5LO75964 103 aa11.63□□□□□ -0.55
VIM-205ENST00000485947 TIRAPP58753 221 aa11.63□□□□□ -0.55
VIM-205ENST00000485947 SMAGPQ0VAQ4 97 aa11.63□□□□□ -0.55
VIM-205ENST00000485947 DEFB104AQ8WTQ1 72 aa11.63□□□□□ -0.55
VIM-205ENST00000485947 OR10D4PQ8NGN7 298 aa11.62□□□□□ -0.55
VIM-205ENST00000485947 TIMM17AQ99595 171 aa11.62□□□□□ -0.55
VIM-205ENST00000485947 TMEM243Q9BU79 118 aa11.62□□□□□ -0.55
VIM-205ENST00000485947 DNAH17Q9UFH2 4485 aa11.61□□□□□ -0.55
VIM-205ENST00000485947 SIVA1O15304 175 aa11.61□□□□□ -0.55
VIM-205ENST00000485947 NPSP0C0P6 89 aa11.61□□□□□ -0.55
VIM-205ENST00000485947 ERASQ7Z444 233 aa11.61□□□□□ -0.55
VIM-205ENST00000485947 SCGB3A1Q96QR1 104 aa11.61□□□□□ -0.55
VIM-205ENST00000485947 PYGO1Q9Y3Y4 419 aa11.61□□□□□ -0.55
VIM-205ENST00000485947 FAT2Q9NYQ8 4349 aa11.6□□□□□ -0.55
VIM-205ENST00000485947 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.6□□□□□ -0.55
VIM-205ENST00000485947 RPL39P62891 51 aaKnown RBP11.6□□□□□ -0.55
VIM-205ENST00000485947 LYPD5Q6UWN5 251 aa11.6□□□□□ -0.55
VIM-205ENST00000485947 IFI27L1Q96BM0 104 aa11.6□□□□□ -0.55
VIM-205ENST00000485947 TMEM141Q96I45 108 aa11.6□□□□□ -0.55
VIM-205ENST00000485947 TIMM21Q9BVV7 248 aa11.6□□□□□ -0.55
VIM-205ENST00000485947 MAP1LC3CQ9BXW4 147 aa11.6□□□□□ -0.55
VIM-205ENST00000485947 SPANXA1Q9NS26 97 aa11.6□□□□□ -0.55
VIM-205ENST00000485947 DNAH2Q9P225 4427 aa11.59□□□□□ -0.55
VIM-205ENST00000485947 TRAV9-2A0A087WT02 112 aa11.59□□□□□ -0.55
VIM-205ENST00000485947 UBE2L6O14933 153 aa11.59□□□□□ -0.55
VIM-205ENST00000485947 LELP1Q5T871 98 aa11.59□□□□□ -0.55
VIM-205ENST00000485947 MRPL52Q86TS9 123 aaKnown RBP11.59□□□□□ -0.55
VIM-205ENST00000485947 DYNC1H1Q14204 4646 aaKnown RBP11.58□□□□□ -0.56
VIM-205ENST00000485947 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.58□□□□□ -0.56
VIM-205ENST00000485947 IGKV2-29A2NJV5 120 aaPredicted RBP11.58□□□□□ -0.56
VIM-205ENST00000485947 IGIPA6NJ69 53 aa11.58□□□□□ -0.56
VIM-205ENST00000485947 AKR1D1P51857 326 aa11.58□□□□□ -0.56
VIM-205ENST00000485947 TNP2Q05952 138 aa11.58□□□□□ -0.56
VIM-205ENST00000485947 LINC00173Q6ZV60 143 aa11.58□□□□□ -0.56
VIM-205ENST00000485947 KRTAP4-5Q9BYR2 181 aa11.58□□□□□ -0.56
VIM-205ENST00000485947 UBE2D4Q9Y2X8 147 aa11.58□□□□□ -0.56
VIM-205ENST00000485947 C3orf79P0CE67 100 aa11.57□□□□□ -0.56
VIM-205ENST00000485947 KRTDAPP60985 99 aa11.57□□□□□ -0.56
VIM-205ENST00000485947 PKIAP61925 76 aa11.57□□□□□ -0.56
VIM-205ENST00000485947 PAPPA-AS1Q5QFB9 102 aa11.57□□□□□ -0.56
VIM-205ENST00000485947 Q6ZN92 141 aa11.57□□□□□ -0.56
VIM-205ENST00000485947 KRTAP1-5Q9BYS1 174 aa11.57□□□□□ -0.56
VIM-205ENST00000485947 CSDC2Q9Y534 153 aaKnown RBP11.57□□□□□ -0.56
VIM-205ENST00000485947 ZNF25P17030 456 aaPredicted RBP11.56□□□□□ -0.56
VIM-205ENST00000485947 SPATA12Q7Z6I5 190 aa11.56□□□□□ -0.56
VIM-205ENST00000485947 NFE4Q86UQ8 179 aa11.56□□□□□ -0.56
VIM-205ENST00000485947 CHCHD5Q9BSY4 110 aa11.56□□□□□ -0.56
VIM-205ENST00000485947 SYS1-DBNDD2H3BUS1 97 aa11.55□□□□□ -0.56
VIM-205ENST00000485947 FGF6P10767 208 aa11.55□□□□□ -0.56
VIM-205ENST00000485947 AMMECR1LQ6DCA0 310 aa11.55□□□□□ -0.56
VIM-205ENST00000485947 PET117Q6UWS5 81 aa11.55□□□□□ -0.56
VIM-205ENST00000485947 DNAH11Q96DT5 4516 aa11.54□□□□□ -0.56
VIM-205ENST00000485947 MRPS36P82909 103 aaKnown RBP11.54□□□□□ -0.56
VIM-205ENST00000485947 DGAT2L7PQ6IED9 249 aa11.54□□□□□ -0.56
VIM-205ENST00000485947 TMEM101Q96IK0 257 aa11.54□□□□□ -0.56
VIM-205ENST00000485947 IGLV4-3A0A075B6K6 122 aa11.53□□□□□ -0.56
VIM-205ENST00000485947 TRAV12-1A0A0B4J245 112 aa11.53□□□□□ -0.56
VIM-205ENST00000485947 TRAV8-6A0A0B4J262 113 aa11.53□□□□□ -0.56
VIM-205ENST00000485947 C20orf202A1L168 122 aa11.53□□□□□ -0.56
VIM-205ENST00000485947 PRSS1P07477 247 aa11.53□□□□□ -0.56
VIM-205ENST00000485947 GAGE6Q13070 117 aa11.53□□□□□ -0.56
VIM-205ENST00000485947 JOSD1Q15040 202 aaPredicted RBP11.53□□□□□ -0.56
VIM-205ENST00000485947 BAALCQ8WXS3 180 aa11.53□□□□□ -0.56
VIM-205ENST00000485947 A0A1B0GUV1 79 aa11.52□□□□□ -0.57
VIM-205ENST00000485947 DNAH10OSP0CZ25 163 aa11.52□□□□□ -0.57
VIM-205ENST00000485947 C10orf126Q8N4M7 172 aa11.52□□□□□ -0.57
VIM-205ENST00000485947 C16orf90A8MZG2 172 aa11.51□□□□□ -0.57
VIM-205ENST00000485947 PMVKQ15126 192 aa11.51□□□□□ -0.57
VIM-205ENST00000485947 OR5A1Q8NGJ0 315 aa11.51□□□□□ -0.57
VIM-205ENST00000485947 H0Y8G0 127 aa11.5□□□□□ -0.57
VIM-205ENST00000485947 LINC01545Q5VT33 79 aa11.5□□□□□ -0.57
VIM-205ENST00000485947 TEX43Q6ZNM6 134 aa11.5□□□□□ -0.57
VIM-205ENST00000485947 Q6ZRN7 208 aaPredicted RBP11.5□□□□□ -0.57
VIM-205ENST00000485947 AMELXQ99217 191 aa11.5□□□□□ -0.57
VIM-205ENST00000485947 VCX2Q9H322 139 aa11.5□□□□□ -0.57
VIM-205ENST00000485947 A0A087WX48 190 aa11.49□□□□□ -0.57
VIM-205ENST00000485947 TMEM262E9PQX1 116 aa11.49□□□□□ -0.57
VIM-205ENST00000485947 CDK2AP2O75956 126 aa11.49□□□□□ -0.57
VIM-205ENST00000485947 Q6ZUT4 128 aa11.49□□□□□ -0.57
VIM-205ENST00000485947 FAM104AQ969W3 186 aa11.49□□□□□ -0.57
VIM-205ENST00000485947 CDC42SE2Q9NRR3 84 aa11.49□□□□□ -0.57
VIM-205ENST00000485947 HSPG2P98160 4391 aa11.49□□□□□ -0.57
VIM-205ENST00000485947 PKD1P98161 4303 aa11.49□□□□□ -0.57
VIM-205ENST00000485947 EREGO14944 169 aa11.48□□□□□ -0.57
VIM-205ENST00000485947 SCGB1D1O95968 90 aa11.48□□□□□ -0.57
VIM-205ENST00000485947 SMIM6P0DI80 62 aa11.48□□□□□ -0.57
VIM-205ENST00000485947 ODF1Q14990 250 aa11.48□□□□□ -0.57
VIM-205ENST00000485947 PYY3Q5JQD4 70 aa11.48□□□□□ -0.57
VIM-205ENST00000485947 ZNF664Q8N3J9 261 aa11.48□□□□□ -0.57
VIM-205ENST00000485947 Q8N976 141 aa11.48□□□□□ -0.57
VIM-205ENST00000485947 OPRPNQ99935 248 aaPredicted RBP11.48□□□□□ -0.57
VIM-205ENST00000485947 C2orf88Q9BSF0 95 aa11.48□□□□□ -0.57
VIM-205ENST00000485947 RBX1P62877 108 aa11.47□□□□□ -0.57
VIM-205ENST00000485947 MPV17L2Q567V2 206 aa11.47□□□□□ -0.57
VIM-205ENST00000485947 CST9LQ9H4G1 147 aa11.47□□□□□ -0.57
VIM-205ENST00000485947 HERC1Q15751 4861 aa11.46□□□□□ -0.57
VIM-205ENST00000485947 F8VRH5 84 aa11.46□□□□□ -0.57
VIM-205ENST00000485947 LINC01556Q5JQF7 62 aa11.46□□□□□ -0.57
VIM-205ENST00000485947 WFDC10BQ8IUB3 73 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 91.8 ms