RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.67□□□□□ -0.86
USP40-214ENST00000483519 IGKV2-29A2NJV5 120 aaPredicted RBP9.67□□□□□ -0.86
USP40-214ENST00000483519 COL12A1Q99715 3063 aa9.67□□□□□ -0.86
USP40-214ENST00000483519 IGLV5-45A0A087WSX0 123 aa9.67□□□□□ -0.86
USP40-214ENST00000483519 KRTAP10-9P60411 292 aa9.67□□□□□ -0.86
USP40-214ENST00000483519 CDKN2A-AS1Q9UH64 79 aa9.67□□□□□ -0.86
USP40-214ENST00000483519 HTN1P15515 57 aa9.66□□□□□ -0.86
USP40-214ENST00000483519 PSMB8P28062 276 aa9.66□□□□□ -0.86
USP40-214ENST00000483519 PIK3CD-AS1Q5SR53 167 aa9.66□□□□□ -0.86
USP40-214ENST00000483519 DGAT2L7PQ6IED9 249 aa9.66□□□□□ -0.86
USP40-214ENST00000483519 LINC00643Q86TS7 51 aa9.66□□□□□ -0.86
USP40-214ENST00000483519 LINC00308Q8TCZ7 52 aa9.66□□□□□ -0.86
USP40-214ENST00000483519 LINC01587Q99440 93 aa9.66□□□□□ -0.86
USP40-214ENST00000483519 LINC00467Q9BRT7 94 aa9.66□□□□□ -0.86
USP40-214ENST00000483519 DSCR9P59020 149 aa9.65□□□□□ -0.86
USP40-214ENST00000483519 DNAJC30Q96LL9 226 aa9.65□□□□□ -0.86
USP40-214ENST00000483519 ASH1LQ9NR48 2969 aaKnown RBP9.65□□□□□ -0.87
USP40-214ENST00000483519 RBMY1A1P0DJD3 496 aaKnown RBP9.64□□□□□ -0.87
USP40-214ENST00000483519 RBMY1CP0DJD4 496 aa9.64□□□□□ -0.87
USP40-214ENST00000483519 RBMY1FQ15415 496 aaKnown RBP9.64□□□□□ -0.87
USP40-214ENST00000483519 KNCNA6PVL3 124 aa9.64□□□□□ -0.87
USP40-214ENST00000483519 TRACP01848 142 aa9.64□□□□□ -0.87
USP40-214ENST00000483519 ATP5G1P05496 136 aa9.64□□□□□ -0.87
USP40-214ENST00000483519 ZNF415Q09FC8 603 aa9.64□□□□□ -0.87
USP40-214ENST00000483519 DEFB113Q30KQ7 82 aa9.64□□□□□ -0.87
USP40-214ENST00000483519 Q9H8V8 135 aa9.64□□□□□ -0.87
USP40-214ENST00000483519 UTP20O75691 2785 aaKnown RBP9.64□□□□□ -0.87
USP40-214ENST00000483519 ABCA2Q9BZC7 2435 aa9.64□□□□□ -0.87
USP40-214ENST00000483519 AKAP6Q13023 2319 aa9.63□□□□□ -0.87
USP40-214ENST00000483519 IGHV4-61A0A0C4DH41 118 aa9.63□□□□□ -0.87
USP40-214ENST00000483519 UNC79Q9P2D8 2635 aa9.63□□□□□ -0.87
USP40-214ENST00000483519 SPG11Q96JI7 2443 aa9.63□□□□□ -0.87
USP40-214ENST00000483519 HERVK_113P63121 156 aa9.63□□□□□ -0.87
USP40-214ENST00000483519 VPREB3Q9UKI3 123 aa9.63□□□□□ -0.87
USP40-214ENST00000483519 IGLV5-39A0A0G2JS06 123 aa9.62□□□□□ -0.87
USP40-214ENST00000483519 SYNJ2BPP57105 145 aa9.62□□□□□ -0.87
USP40-214ENST00000483519 DAZ2Q13117 558 aaKnown RBP9.62□□□□□ -0.87
USP40-214ENST00000483519 C9orf153Q5TBE3 101 aa9.62□□□□□ -0.87
USP40-214ENST00000483519 DAZ4Q86SG3 579 aaKnown RBP9.62□□□□□ -0.87
USP40-214ENST00000483519 SMCR5Q8TEV8 140 aa9.62□□□□□ -0.87
USP40-214ENST00000483519 DAZ3Q9NR90 486 aaKnown RBP9.62□□□□□ -0.87
USP40-214ENST00000483519 FLNBO75369 2602 aaKnown RBP9.62□□□□□ -0.87
USP40-214ENST00000483519 Q6ZSN1 163 aa9.62□□□□□ -0.87
USP40-214ENST00000483519 C3orf22Q8N5N4 141 aa9.62□□□□□ -0.87
USP40-214ENST00000483519 Q9UF83 564 aa9.62□□□□□ -0.87
USP40-214ENST00000483519 IGHV3-38A0A0C4DH36 116 aa9.61□□□□□ -0.87
USP40-214ENST00000483519 IGHV3-53P01767 116 aa9.61□□□□□ -0.87
USP40-214ENST00000483519 PEMTQ9UBM1 199 aa9.61□□□□□ -0.87
USP40-214ENST00000483519 ABCA12Q86UK0 2595 aa9.61□□□□□ -0.87
USP40-214ENST00000483519 UQCRQO14949 82 aa9.61□□□□□ -0.87
USP40-214ENST00000483519 CXCL5P42830 114 aa9.61□□□□□ -0.87
USP40-214ENST00000483519 C3orf56Q8N813 242 aa9.61□□□□□ -0.87
USP40-214ENST00000483519 BAALC-AS2P0C853 105 aa9.6□□□□□ -0.87
USP40-214ENST00000483519 INAFM2P0DMQ5 153 aa9.6□□□□□ -0.87
USP40-214ENST00000483519 FAM222AQ5U5X8 452 aa9.6□□□□□ -0.87
USP40-214ENST00000483519 SDIM1Q6ZPB5 146 aa9.6□□□□□ -0.87
USP40-214ENST00000483519 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP9.6□□□□□ -0.87
USP40-214ENST00000483519 CENPEQ02224 2701 aa9.6□□□□□ -0.87
USP40-214ENST00000483519 ZNF625Q96I27 306 aaPredicted RBP9.6□□□□□ -0.87
USP40-214ENST00000483519 BEAN1Q3B7T3 259 aa9.59□□□□□ -0.87
USP40-214ENST00000483519 NAV2Q8IVL1 2488 aa9.59□□□□□ -0.87
USP40-214ENST00000483519 NACAE9PAV3 2078 aa9.59□□□□□ -0.87
USP40-214ENST00000483519 F5H768 121 aa9.59□□□□□ -0.87
USP40-214ENST00000483519 NDUFA7O95182 113 aa9.59□□□□□ -0.87
USP40-214ENST00000483519 COX6A2Q02221 97 aa9.59□□□□□ -0.87
USP40-214ENST00000483519 Q8N2B8 174 aa9.59□□□□□ -0.87
USP40-214ENST00000483519 ANKRD17O75179 2603 aaKnown RBP9.58□□□□□ -0.88
USP40-214ENST00000483519 IGHV3OR16-12A0A075B7B8 117 aa9.58□□□□□ -0.88
USP40-214ENST00000483519 LINC00242Q5T6M2 205 aa9.58□□□□□ -0.88
USP40-214ENST00000483519 C10orf99Q6UWK7 81 aa9.58□□□□□ -0.88
USP40-214ENST00000483519 SOSTDC1Q6X4U4 206 aa9.58□□□□□ -0.88
USP40-214ENST00000483519 PRIMA1Q86XR5 153 aa9.58□□□□□ -0.88
USP40-214ENST00000483519 C10orf105Q8TEF2 133 aa9.58□□□□□ -0.88
USP40-214ENST00000483519 ZFHX3Q15911 3703 aa9.58□□□□□ -0.88
USP40-214ENST00000483519 A8MTW9 85 aa9.58□□□□□ -0.88
USP40-214ENST00000483519 MSMBP08118 114 aa9.58□□□□□ -0.88
USP40-214ENST00000483519 PPDPFQ9H3Y8 114 aa9.58□□□□□ -0.88
USP40-214ENST00000483519 SMIM1B2RUZ4 78 aa9.57□□□□□ -0.88
USP40-214ENST00000483519 DEFB131AP59861 70 aa9.57□□□□□ -0.88
USP40-214ENST00000483519 FAM19A3Q7Z5A8 133 aa9.57□□□□□ -0.88
USP40-214ENST00000483519 LINC00526Q96FQ7 95 aa9.57□□□□□ -0.88
USP40-214ENST00000483519 HOXD3P31249 432 aaPredicted RBP9.57□□□□□ -0.88
USP40-214ENST00000483519 C5orf38Q86SI9 138 aa9.56□□□□□ -0.88
USP40-214ENST00000483519 PRM2P04554 102 aa9.56□□□□□ -0.88
USP40-214ENST00000483519 HIST2H2BDQ6DRA6 164 aa9.56□□□□□ -0.88
USP40-214ENST00000483519 NOTCH2Q04721 2471 aa9.55□□□□□ -0.88
USP40-214ENST00000483519 MRAPQ8TCY5 172 aa9.55□□□□□ -0.88
USP40-214ENST00000483519 GAGE2AQ6NT46 116 aa9.55□□□□□ -0.88
USP40-214ENST00000483519 APCP25054 2843 aa9.55□□□□□ -0.88
USP40-214ENST00000483519 RBMY1BA6NDE4 496 aaKnown RBP9.54□□□□□ -0.88
USP40-214ENST00000483519 RBMY1EA6NEQ0 496 aaKnown RBP9.54□□□□□ -0.88
USP40-214ENST00000483519 RBMY1DP0C7P1 496 aaKnown RBP9.54□□□□□ -0.88
USP40-214ENST00000483519 C11orf72Q8NBR9 251 aa9.54□□□□□ -0.88
USP40-214ENST00000483519 OVOL2Q9BRP0 275 aa9.54□□□□□ -0.88
USP40-214ENST00000483519 POLQO75417 2590 aa9.54□□□□□ -0.88
USP40-214ENST00000483519 TRAV13-2A0A0B4J235 113 aa9.54□□□□□ -0.88
USP40-214ENST00000483519 IGHV4-59P01825 116 aa9.54□□□□□ -0.88
USP40-214ENST00000483519 STHQ8IWL8 128 aa9.54□□□□□ -0.88
USP40-214ENST00000483519 FAM218AQ96MZ4 157 aa9.54□□□□□ -0.88
USP40-214ENST00000483519 CELSR2Q9HCU4 2923 aa9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 132.8 ms