RNA–Protein interactions for RNA: ENST00000478214.1

HMGA1-206, Transcript of high mobility group AT-hook 1, humanhuman

TSL 1 (best)

Gene HMGA1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-206ENST00000478214 RPL32P62910 135 aaKnown RBP10.16□□□□□ -0.78
HMGA1-206ENST00000478214 MRPL52Q86TS9 123 aaKnown RBP10.16□□□□□ -0.78
HMGA1-206ENST00000478214 SEC11CQ9BY50 192 aa10.16□□□□□ -0.78
HMGA1-206ENST00000478214 GAGE12HA6NDE8 117 aa10.15□□□□□ -0.78
HMGA1-206ENST00000478214 TMEM136Q6ZRR5 245 aa10.15□□□□□ -0.78
HMGA1-206ENST00000478214 ORMDL3Q8N138 153 aa10.15□□□□□ -0.78
HMGA1-206ENST00000478214 SMIM2Q9BVW6 85 aa10.15□□□□□ -0.78
HMGA1-206ENST00000478214 PHOX2AO14813 284 aa10.14□□□□□ -0.79
HMGA1-206ENST00000478214 CHCHD10Q8WYQ3 142 aaPredicted RBP10.14□□□□□ -0.79
HMGA1-206ENST00000478214 PRELID3AQ96N28 172 aa10.14□□□□□ -0.79
HMGA1-206ENST00000478214 CDC42SE2Q9NRR3 84 aa10.14□□□□□ -0.79
HMGA1-206ENST00000478214 DGAT2L7PQ6IED9 249 aa10.13□□□□□ -0.79
HMGA1-206ENST00000478214 IMMP2LQ96T52 175 aa10.13□□□□□ -0.79
HMGA1-206ENST00000478214 CTDSP1Q9GZU7 261 aa10.13□□□□□ -0.79
HMGA1-206ENST00000478214 VPS13BQ7Z7G8 4022 aa10.12□□□□□ -0.79
HMGA1-206ENST00000478214 SMR3BP02814 79 aaPredicted RBP10.12□□□□□ -0.79
HMGA1-206ENST00000478214 Q6ZSA8 131 aa10.12□□□□□ -0.79
HMGA1-206ENST00000478214 ZNF664Q8N3J9 261 aa10.12□□□□□ -0.79
HMGA1-206ENST00000478214 CLRN3Q8NCR9 226 aa10.12□□□□□ -0.79
HMGA1-206ENST00000478214 UBE2D4Q9Y2X8 147 aa10.12□□□□□ -0.79
HMGA1-206ENST00000478214 LINC00959A0A1B0GUT2 108 aa10.11□□□□□ -0.79
HMGA1-206ENST00000478214 hDV102S1A0JD36 115 aa10.11□□□□□ -0.79
HMGA1-206ENST00000478214 TCAPO15273 167 aa10.11□□□□□ -0.79
HMGA1-206ENST00000478214 XCL1P47992 114 aa10.1□□□□□ -0.79
HMGA1-206ENST00000478214 RPL39P62891 51 aaKnown RBP10.1□□□□□ -0.79
HMGA1-206ENST00000478214 RNASE13Q5GAN3 156 aaKnown RBP10.1□□□□□ -0.79
HMGA1-206ENST00000478214 C10orf91Q5T1B1 145 aa10.1□□□□□ -0.79
HMGA1-206ENST00000478214 C15orf56Q8N910 161 aa10.1□□□□□ -0.79
HMGA1-206ENST00000478214 CSDC2Q9Y534 153 aaKnown RBP10.1□□□□□ -0.79
HMGA1-206ENST00000478214 EPM2AB3EWF7 344 aa10.09□□□□□ -0.79
HMGA1-206ENST00000478214 CCL25O15444 150 aa10.09□□□□□ -0.79
HMGA1-206ENST00000478214 SMAGPQ0VAQ4 97 aa10.09□□□□□ -0.79
HMGA1-206ENST00000478214 FOXI1Q12951 378 aa10.09□□□□□ -0.79
HMGA1-206ENST00000478214 Q6ZUT4 128 aa10.09□□□□□ -0.79
HMGA1-206ENST00000478214 TMEM18Q96B42 140 aa10.09□□□□□ -0.79
HMGA1-206ENST00000478214 TIMM21Q9BVV7 248 aa10.09□□□□□ -0.79
HMGA1-206ENST00000478214 LAMTOR2Q9Y2Q5 125 aa10.09□□□□□ -0.79
HMGA1-206ENST00000478214 CARHSP1Q9Y2V2 147 aaKnown RBP10.09□□□□□ -0.79
HMGA1-206ENST00000478214 LOC389332A0A1B0GUA5 103 aa10.08□□□□□ -0.8
HMGA1-206ENST00000478214 SS18Q15532 418 aa10.08□□□□□ -0.8
HMGA1-206ENST00000478214 C9orf163Q8N9P6 203 aa10.08□□□□□ -0.8
HMGA1-206ENST00000478214 TRAV9-1A0A075B6T8 112 aa10.07□□□□□ -0.8
HMGA1-206ENST00000478214 PRSS47A8MTI9 375 aa10.07□□□□□ -0.8
HMGA1-206ENST00000478214 SLPIP03973 132 aa10.07□□□□□ -0.8
HMGA1-206ENST00000478214 RAB5AP20339 215 aa10.07□□□□□ -0.8
HMGA1-206ENST00000478214 CNBPP62633 177 aaKnown RBP10.07□□□□□ -0.8
HMGA1-206ENST00000478214 CFAP161Q6P656 301 aa10.07□□□□□ -0.8
HMGA1-206ENST00000478214 MAP1LC3AQ9H492 121 aa10.07□□□□□ -0.8
HMGA1-206ENST00000478214 AP5S1Q9NUS5 200 aa10.07□□□□□ -0.8
HMGA1-206ENST00000478214 S100PP25815 95 aa10.06□□□□□ -0.8
HMGA1-206ENST00000478214 HIGD2BQ4VC39 106 aa10.06□□□□□ -0.8
HMGA1-206ENST00000478214 Q5VSD8 79 aa10.06□□□□□ -0.8
HMGA1-206ENST00000478214 SCXQ7RTU7 201 aa10.06□□□□□ -0.8
HMGA1-206ENST00000478214 TRAV13-1A0A0B4J241 112 aa10.05□□□□□ -0.8
HMGA1-206ENST00000478214 CD164L2Q6UWJ8 174 aa10.05□□□□□ -0.8
HMGA1-206ENST00000478214 FAM104AQ969W3 186 aa10.05□□□□□ -0.8
HMGA1-206ENST00000478214 OPRPNQ99935 248 aaPredicted RBP10.05□□□□□ -0.8
HMGA1-206ENST00000478214 CHAC1Q9BUX1 264 aa10.05□□□□□ -0.8
HMGA1-206ENST00000478214 RPS10P5Q9NQ39 176 aa10.05□□□□□ -0.8
HMGA1-206ENST00000478214 SPANXA1Q9NS26 97 aa10.05□□□□□ -0.8
HMGA1-206ENST00000478214 C1orf196B1AJZ1 125 aa10.04□□□□□ -0.8
HMGA1-206ENST00000478214 RHEBQ15382 184 aa10.04□□□□□ -0.8
HMGA1-206ENST00000478214 KIAA1644Q3SXP7 199 aa10.04□□□□□ -0.8
HMGA1-206ENST00000478214 SDIM1Q6ZPB5 146 aa10.04□□□□□ -0.8
HMGA1-206ENST00000478214 Q8N8P6 123 aa10.04□□□□□ -0.8
HMGA1-206ENST00000478214 GVQW2A0A096LPI5 108 aaPredicted RBP10.03□□□□□ -0.8
HMGA1-206ENST00000478214 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.03□□□□□ -0.8
HMGA1-206ENST00000478214 IGHV1-58A0A0C4DH39 117 aa10.02□□□□□ -0.81
HMGA1-206ENST00000478214 FAM229AH3BQW9 127 aa10.02□□□□□ -0.81
HMGA1-206ENST00000478214 APOC3P02656 99 aa10.02□□□□□ -0.81
HMGA1-206ENST00000478214 MRPS36P82909 103 aaKnown RBP10.02□□□□□ -0.81
HMGA1-206ENST00000478214 CIRBP-AS1Q8TBR5 109 aa10.02□□□□□ -0.81
HMGA1-206ENST00000478214 GNB1LQ9BYB4 327 aa10.02□□□□□ -0.81
HMGA1-206ENST00000478214 LINC00526Q96FQ7 95 aa10.01□□□□□ -0.81
HMGA1-206ENST00000478214 IGHV3-64A0A075B6Q5 118 aa10□□□□□ -0.81
HMGA1-206ENST00000478214 PANO1I0J062 215 aa10□□□□□ -0.81
HMGA1-206ENST00000478214 IFI27P40305 119 aaPredicted RBP10□□□□□ -0.81
HMGA1-206ENST00000478214 LINC00528Q8N1L1 170 aa10□□□□□ -0.81
HMGA1-206ENST00000478214 PYGO1Q9Y3Y4 419 aa10□□□□□ -0.81
HMGA1-206ENST00000478214 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10□□□□□ -0.81
HMGA1-206ENST00000478214 SRRM2Q9UQ35 2752 aaKnown RBP10□□□□□ -0.81
HMGA1-206ENST00000478214 IFITM10A6NMD0 228 aa9.99□□□□□ -0.81
HMGA1-206ENST00000478214 COX7A2LO14548 114 aa9.99□□□□□ -0.81
HMGA1-206ENST00000478214 ORMDL2Q53FV1 153 aa9.99□□□□□ -0.81
HMGA1-206ENST00000478214 C2orf66Q6UXQ4 117 aa9.99□□□□□ -0.81
HMGA1-206ENST00000478214 C5orf38Q86SI9 138 aa9.99□□□□□ -0.81
HMGA1-206ENST00000478214 NXT2Q9NPJ8 142 aaKnown RBP9.99□□□□□ -0.81
HMGA1-206ENST00000478214 CYSLTR1Q9Y271 337 aa9.99□□□□□ -0.81
HMGA1-206ENST00000478214 IGLV4-3A0A075B6K6 122 aa9.98□□□□□ -0.81
HMGA1-206ENST00000478214 MALP21145 153 aa9.98□□□□□ -0.81
HMGA1-206ENST00000478214 NDUFA5Q16718 116 aa9.98□□□□□ -0.81
HMGA1-206ENST00000478214 COX19Q49B96 90 aa9.98□□□□□ -0.81
HMGA1-206ENST00000478214 K7EMI3 77 aa9.97□□□□□ -0.81
HMGA1-206ENST00000478214 CHTF8P0CG12 524 aa9.97□□□□□ -0.81
HMGA1-206ENST00000478214 INAFM2P0DMQ5 153 aa9.97□□□□□ -0.81
HMGA1-206ENST00000478214 SVBPQ8N300 66 aa9.97□□□□□ -0.81
HMGA1-206ENST00000478214 ALKBH7Q9BT30 221 aaPredicted RBP9.97□□□□□ -0.81
HMGA1-206ENST00000478214 TGIF2-C20orf24A0A0A6YYL0 155 aa9.96□□□□□ -0.82
HMGA1-206ENST00000478214 ZNF561-AS1K7EIQ3 104 aa9.96□□□□□ -0.82
HMGA1-206ENST00000478214 SNAPINO95295 136 aa9.96□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 113.3 ms