RNA–Protein interactions for RNA: ENST00000473295.2

SCN1A-205, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 544 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-205ENST00000473295 STX12Q86Y82 276 aa-0.67□□□□□ -2.52
SCN1A-205ENST00000473295 FAM223AQ8IWN6 122 aa-0.67□□□□□ -2.52
SCN1A-205ENST00000473295 ATP6V0E2Q8NHE4 81 aa-0.67□□□□□ -2.52
SCN1A-205ENST00000473295 ARL11Q969Q4 196 aa-0.67□□□□□ -2.52
SCN1A-205ENST00000473295 YPEL2Q96QA6 119 aa-0.67□□□□□ -2.52
SCN1A-205ENST00000473295 MRPL34Q9BQ48 92 aaKnown RBP-0.67□□□□□ -2.52
SCN1A-205ENST00000473295 BANF2Q9H503 90 aa-0.67□□□□□ -2.52
SCN1A-205ENST00000473295 LYRM2Q9NU23 88 aaPredicted RBP-0.67□□□□□ -2.52
SCN1A-205ENST00000473295 TAS2R8Q9NYW2 309 aa-0.67□□□□□ -2.52
SCN1A-205ENST00000473295 CACFD1Q9UGQ2 172 aa-0.67□□□□□ -2.52
SCN1A-205ENST00000473295 LSM5Q9Y4Y9 91 aaKnown RBP-0.67□□□□□ -2.52
SCN1A-205ENST00000473295 OVOS2A0A0G2JMS6 1433 aa-0.67□□□□□ -2.52
SCN1A-205ENST00000473295 CDC42BPGQ6DT37 1551 aa-0.67□□□□□ -2.52
SCN1A-205ENST00000473295 C4AP0C0L4 1744 aa-0.67□□□□□ -2.52
SCN1A-205ENST00000473295 C4BP0C0L5 1744 aa-0.67□□□□□ -2.52
SCN1A-205ENST00000473295 RGPD1P0DJD0 1748 aa-0.67□□□□□ -2.52
SCN1A-205ENST00000473295 CCDC171Q6TFL3 1326 aa-0.67□□□□□ -2.52
SCN1A-205ENST00000473295 A2MP01023 1474 aa-0.67□□□□□ -2.52
SCN1A-205ENST00000473295 PXDNQ92626 1479 aa-0.67□□□□□ -2.52
SCN1A-205ENST00000473295 MGAQ8IWI9 3026 aa-0.67□□□□□ -2.52
SCN1A-205ENST00000473295 USP32Q8NFA0 1604 aa-0.67□□□□□ -2.52
SCN1A-205ENST00000473295 MTORP42345 2549 aa-0.68□□□□□ -2.52
SCN1A-205ENST00000473295 EIF3AQ14152 1382 aaKnown RBP-0.68□□□□□ -2.52
SCN1A-205ENST00000473295 TRAV36DV7A0A075B6V5 113 aa-0.68□□□□□ -2.52
SCN1A-205ENST00000473295 LOC105371267A0A1B0GV96 52 aa-0.68□□□□□ -2.52
SCN1A-205ENST00000473295 MAP1LC3B2A6NCE7 125 aa-0.68□□□□□ -2.52
SCN1A-205ENST00000473295 SMIM23A6NLE4 172 aa-0.68□□□□□ -2.52
SCN1A-205ENST00000473295 LRRC37A2A6NM11 1700 aa-0.68□□□□□ -2.52
SCN1A-205ENST00000473295 BBIP1A8MTZ0 92 aa-0.68□□□□□ -2.52
SCN1A-205ENST00000473295 OOSP1A8MZH6 123 aa-0.68□□□□□ -2.52
SCN1A-205ENST00000473295 TRANK1O15050 2925 aa-0.68□□□□□ -2.52
SCN1A-205ENST00000473295 ARPC5O15511 151 aa-0.68□□□□□ -2.52
SCN1A-205ENST00000473295 IFNA7P01567 189 aa-0.68□□□□□ -2.52
SCN1A-205ENST00000473295 TPM1P09493 284 aa-0.68□□□□□ -2.52
SCN1A-205ENST00000473295 TSPAN19P0C672 248 aa-0.68□□□□□ -2.52
SCN1A-205ENST00000473295 DEFB130BP0DP73 79 aa-0.68□□□□□ -2.52
SCN1A-205ENST00000473295 DEFB130AP0DP74 79 aa-0.68□□□□□ -2.52
SCN1A-205ENST00000473295 HIST1H1DP16402 221 aaKnown RBP-0.68□□□□□ -2.52
SCN1A-205ENST00000473295 RPS28P62857 69 aaKnown RBP-0.68□□□□□ -2.52
SCN1A-205ENST00000473295 CCL8P80075 99 aa-0.68□□□□□ -2.52
SCN1A-205ENST00000473295 PLGLB1Q02325 96 aa-0.68□□□□□ -2.52
SCN1A-205ENST00000473295 COTL1Q14019 142 aa-0.68□□□□□ -2.52
SCN1A-205ENST00000473295 ALX1Q15699 326 aa-0.68□□□□□ -2.52
SCN1A-205ENST00000473295 DEFB110Q30KQ9 67 aa-0.68□□□□□ -2.52
SCN1A-205ENST00000473295 LIN52Q52LA3 116 aa-0.68□□□□□ -2.52
SCN1A-205ENST00000473295 SCIMPQ6UWF3 145 aa-0.68□□□□□ -2.52
SCN1A-205ENST00000473295 CDC26Q8NHZ8 85 aa-0.68□□□□□ -2.52
SCN1A-205ENST00000473295 GRPEL2Q8TAA5 225 aa-0.68□□□□□ -2.52
SCN1A-205ENST00000473295 PHB2Q99623 299 aa-0.68□□□□□ -2.52
SCN1A-205ENST00000473295 SMIM7Q9BQ49 75 aa-0.68□□□□□ -2.52
SCN1A-205ENST00000473295 CMSS1Q9BQ75 279 aaKnown RBP-0.68□□□□□ -2.52
SCN1A-205ENST00000473295 MAP1LC3BQ9GZQ8 125 aa-0.68□□□□□ -2.52
SCN1A-205ENST00000473295 BOLA2Q9H3K6 86 aa-0.68□□□□□ -2.52
SCN1A-205ENST00000473295 PARVGQ9HBI0 331 aa-0.68□□□□□ -2.52
SCN1A-205ENST00000473295 NPVFQ9HCQ7 196 aa-0.68□□□□□ -2.52
SCN1A-205ENST00000473295 MED11Q9P086 117 aa-0.68□□□□□ -2.52
SCN1A-205ENST00000473295 PYCARDQ9ULZ3 195 aa-0.68□□□□□ -2.52
SCN1A-205ENST00000473295 NOP16Q9Y3C1 178 aaKnown RBP-0.68□□□□□ -2.52
SCN1A-205ENST00000473295 SPCS1Q9Y6A9 102 aa-0.68□□□□□ -2.52
SCN1A-205ENST00000473295 SPTBN1Q01082 2364 aaKnown RBP-0.68□□□□□ -2.52
SCN1A-205ENST00000473295 UHRF1BP1LA0JNW5 1464 aa-0.68□□□□□ -2.52
SCN1A-205ENST00000473295 CAMSAP2Q08AD1 1489 aa-0.68□□□□□ -2.52
SCN1A-205ENST00000473295 IFT140Q96RY7 1462 aa-0.68□□□□□ -2.52
SCN1A-205ENST00000473295 SHANK2Q9UPX8 1470 aa-0.68□□□□□ -2.52
SCN1A-205ENST00000473295 ITPR1Q14643 2758 aa-0.68□□□□□ -2.52
SCN1A-205ENST00000473295 ZFHX4Q86UP3 3567 aa-0.68□□□□□ -2.52
SCN1A-205ENST00000473295 WIZO95785 1651 aa-0.69□□□□□ -2.52
SCN1A-205ENST00000473295 NBASA2RRP1 2371 aa-0.69□□□□□ -2.52
SCN1A-205ENST00000473295 CEP152O94986 1710 aa-0.69□□□□□ -2.52
SCN1A-205ENST00000473295 SYNMO15061 1565 aa-0.69□□□□□ -2.52
SCN1A-205ENST00000473295 EIF4G3O43432 1585 aaKnown RBP-0.69□□□□□ -2.52
SCN1A-205ENST00000473295 ADGRG4Q8IZF6 3080 aa-0.69□□□□□ -2.52
SCN1A-205ENST00000473295 MYH6P13533 1939 aa-0.69□□□□□ -2.52
SCN1A-205ENST00000473295 SMG6Q86US8 1419 aaKnown RBP-0.69□□□□□ -2.52
SCN1A-205ENST00000473295 TRBV7-3A0A075B6L6 115 aa-0.69□□□□□ -2.52
SCN1A-205ENST00000473295 TRAV16A0A0A6YYK6 109 aaPredicted RBP-0.69□□□□□ -2.52
SCN1A-205ENST00000473295 TRBV7-4A0A0J9YYF1 115 aa-0.69□□□□□ -2.52
SCN1A-205ENST00000473295 CTXND1A0A1B0GTU2 59 aa-0.69□□□□□ -2.52
SCN1A-205ENST00000473295 A0A1B0GV50 99 aa-0.69□□□□□ -2.52
SCN1A-205ENST00000473295 FAM223BA6NKX1 122 aa-0.69□□□□□ -2.52
SCN1A-205ENST00000473295 F8VRH5 84 aa-0.69□□□□□ -2.52
SCN1A-205ENST00000473295 G3V2T6 193 aa-0.69□□□□□ -2.52
SCN1A-205ENST00000473295 H3BQV1 296 aa-0.69□□□□□ -2.52
SCN1A-205ENST00000473295 PGRMC1O00264 195 aaKnown RBP-0.69□□□□□ -2.52
SCN1A-205ENST00000473295 PIN1P1O15428 100 aa-0.69□□□□□ -2.52
SCN1A-205ENST00000473295 LYRM1O43325 122 aa-0.69□□□□□ -2.52
SCN1A-205ENST00000473295 SCTP09683 121 aa-0.69□□□□□ -2.52
SCN1A-205ENST00000473295 OCM2P0CE71 109 aa-0.69□□□□□ -2.52
SCN1A-205ENST00000473295 OCMP0CE72 109 aaPredicted RBP-0.69□□□□□ -2.52
SCN1A-205ENST00000473295 AP2S1P53680 142 aaPredicted RBP-0.69□□□□□ -2.52
SCN1A-205ENST00000473295 BTG2P78543 158 aa-0.69□□□□□ -2.52
SCN1A-205ENST00000473295 TFAMQ00059 246 aaKnown RBP-0.69□□□□□ -2.52
SCN1A-205ENST00000473295 TMEM128Q5BJH2 165 aa-0.69□□□□□ -2.52
SCN1A-205ENST00000473295 C10orf128Q5T292 105 aa-0.69□□□□□ -2.52
SCN1A-205ENST00000473295 AKR1C8PQ5T2L2 129 aa-0.69□□□□□ -2.52
SCN1A-205ENST00000473295 LYRM7Q5U5X0 104 aa-0.69□□□□□ -2.52
SCN1A-205ENST00000473295 ZNF818PQ6ZRF7 136 aa-0.69□□□□□ -2.52
SCN1A-205ENST00000473295 NDUFA11Q86Y39 141 aa-0.69□□□□□ -2.52
SCN1A-205ENST00000473295 OR8I2Q8N0Y5 310 aa-0.69□□□□□ -2.52
SCN1A-205ENST00000473295 FAM24BQ8N5W8 94 aa-0.69□□□□□ -2.52
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms