RNA–Protein interactions for RNA: ENST00000459756.5

COL7A1-203, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 818 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-203ENST00000459756 ZNF25P17030 456 aaPredicted RBP10.46□□□□□ -0.73
COL7A1-203ENST00000459756 RNASEKQ6P5S7 137 aaKnown RBP10.46□□□□□ -0.73
COL7A1-203ENST00000459756 SCXQ7RTU7 201 aa10.46□□□□□ -0.73
COL7A1-203ENST00000459756 IMMP2LQ96T52 175 aa10.46□□□□□ -0.73
COL7A1-203ENST00000459756 CHAC1Q9BUX1 264 aa10.46□□□□□ -0.73
COL7A1-203ENST00000459756 TRBV27A0A0K0K1C4 114 aa10.45□□□□□ -0.74
COL7A1-203ENST00000459756 TSHBP01222 138 aa10.45□□□□□ -0.74
COL7A1-203ENST00000459756 CKS2P33552 79 aa10.45□□□□□ -0.74
COL7A1-203ENST00000459756 POLR2KP53803 58 aaKnown RBP10.45□□□□□ -0.74
COL7A1-203ENST00000459756 D6R8Y8 96 aa10.44□□□□□ -0.74
COL7A1-203ENST00000459756 ESDP10768 282 aa10.44□□□□□ -0.74
COL7A1-203ENST00000459756 C9orf163Q8N9P6 203 aa10.44□□□□□ -0.74
COL7A1-203ENST00000459756 TMEM242Q9NWH2 141 aa10.44□□□□□ -0.74
COL7A1-203ENST00000459756 IGKV3OR2-268A0A0C4DH90 116 aa10.43□□□□□ -0.74
COL7A1-203ENST00000459756 hDV102S1A0JD36 115 aa10.43□□□□□ -0.74
COL7A1-203ENST00000459756 VCYO14598 125 aa10.43□□□□□ -0.74
COL7A1-203ENST00000459756 PLA2G1BP04054 148 aaKnown RBP10.43□□□□□ -0.74
COL7A1-203ENST00000459756 LINC00528Q8N1L1 170 aa10.43□□□□□ -0.74
COL7A1-203ENST00000459756 TMEM101Q96IK0 257 aa10.43□□□□□ -0.74
COL7A1-203ENST00000459756 GAGE12HA6NDE8 117 aa10.42□□□□□ -0.74
COL7A1-203ENST00000459756 CNBPP62633 177 aaKnown RBP10.42□□□□□ -0.74
COL7A1-203ENST00000459756 NRACQ8N912 160 aa10.42□□□□□ -0.74
COL7A1-203ENST00000459756 SUMO2P61956 95 aaKnown RBP10.41□□□□□ -0.74
COL7A1-203ENST00000459756 CFAP161Q6P656 301 aa10.41□□□□□ -0.74
COL7A1-203ENST00000459756 OR5A1Q8NGJ0 315 aa10.41□□□□□ -0.74
COL7A1-203ENST00000459756 CIRBP-AS1Q8TBR5 109 aa10.41□□□□□ -0.74
COL7A1-203ENST00000459756 CHCHD10Q8WYQ3 142 aaPredicted RBP10.41□□□□□ -0.74
COL7A1-203ENST00000459756 AP5S1Q9NUS5 200 aa10.41□□□□□ -0.74
COL7A1-203ENST00000459756 TRAV9-1A0A075B6T8 112 aa10.4□□□□□ -0.74
COL7A1-203ENST00000459756 TNFRSF6BO95407 300 aa10.4□□□□□ -0.74
COL7A1-203ENST00000459756 NPYP01303 97 aa10.4□□□□□ -0.74
COL7A1-203ENST00000459756 FCER1GP30273 86 aa10.4□□□□□ -0.74
COL7A1-203ENST00000459756 TMEM136Q6ZRR5 245 aa10.4□□□□□ -0.74
COL7A1-203ENST00000459756 MRPL52Q86TS9 123 aaKnown RBP10.4□□□□□ -0.74
COL7A1-203ENST00000459756 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.39□□□□□ -0.75
COL7A1-203ENST00000459756 TGIF2-C20orf24A0A0A6YYL0 155 aa10.39□□□□□ -0.75
COL7A1-203ENST00000459756 ORMDL3Q8N138 153 aa10.39□□□□□ -0.75
COL7A1-203ENST00000459756 PRELID3AQ96N28 172 aa10.39□□□□□ -0.75
COL7A1-203ENST00000459756 KIR2DL4Q99706 377 aa10.39□□□□□ -0.75
COL7A1-203ENST00000459756 SMAGPQ0VAQ4 97 aa10.38□□□□□ -0.75
COL7A1-203ENST00000459756 SDIM1Q6ZPB5 146 aa10.38□□□□□ -0.75
COL7A1-203ENST00000459756 C15orf56Q8N910 161 aa10.38□□□□□ -0.75
COL7A1-203ENST00000459756 C20orf78Q9BR46 151 aa10.38□□□□□ -0.75
COL7A1-203ENST00000459756 TRBV24-1A0A075B6N3 115 aa10.37□□□□□ -0.75
COL7A1-203ENST00000459756 LINC00959A0A1B0GUT2 108 aa10.37□□□□□ -0.75
COL7A1-203ENST00000459756 PPBPP02775 128 aa10.37□□□□□ -0.75
COL7A1-203ENST00000459756 KIAA1644Q3SXP7 199 aa10.37□□□□□ -0.75
COL7A1-203ENST00000459756 CDC42SE2Q9NRR3 84 aa10.37□□□□□ -0.75
COL7A1-203ENST00000459756 MYCBP2O75592 4640 aa10.37□□□□□ -0.75
COL7A1-203ENST00000459756 FLG2Q5D862 2391 aaPredicted RBP10.36□□□□□ -0.75
COL7A1-203ENST00000459756 IGHV3-64A0A075B6Q5 118 aa10.36□□□□□ -0.75
COL7A1-203ENST00000459756 LOC389332A0A1B0GUA5 103 aa10.36□□□□□ -0.75
COL7A1-203ENST00000459756 SLPIP03973 132 aa10.36□□□□□ -0.75
COL7A1-203ENST00000459756 RPL32P62910 135 aaKnown RBP10.36□□□□□ -0.75
COL7A1-203ENST00000459756 FOXI1Q12951 378 aa10.36□□□□□ -0.75
COL7A1-203ENST00000459756 ZNF664Q8N3J9 261 aa10.36□□□□□ -0.75
COL7A1-203ENST00000459756 TCAPO15273 167 aa10.35□□□□□ -0.75
COL7A1-203ENST00000459756 XCL1P47992 114 aa10.35□□□□□ -0.75
COL7A1-203ENST00000459756 SS18Q15532 418 aa10.35□□□□□ -0.75
COL7A1-203ENST00000459756 CBLN2Q8IUK8 224 aa10.35□□□□□ -0.75
COL7A1-203ENST00000459756 SMIM2Q9BVW6 85 aa10.35□□□□□ -0.75
COL7A1-203ENST00000459756 CSDC2Q9Y534 153 aaKnown RBP10.35□□□□□ -0.75
COL7A1-203ENST00000459756 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.35□□□□□ -0.75
COL7A1-203ENST00000459756 DMBT1Q9UGM3 2413 aaPredicted RBP10.34□□□□□ -0.75
COL7A1-203ENST00000459756 GVQW2A0A096LPI5 108 aaPredicted RBP10.34□□□□□ -0.75
COL7A1-203ENST00000459756 CCL25O15444 150 aa10.34□□□□□ -0.75
COL7A1-203ENST00000459756 GNB1LQ9BYB4 327 aa10.34□□□□□ -0.75
COL7A1-203ENST00000459756 PHOX2AO14813 284 aa10.33□□□□□ -0.76
COL7A1-203ENST00000459756 HIGD2BQ4VC39 106 aa10.33□□□□□ -0.76
COL7A1-203ENST00000459756 TMEM18Q96B42 140 aa10.33□□□□□ -0.76
COL7A1-203ENST00000459756 MRPL18Q9H0U6 180 aaKnown RBP10.33□□□□□ -0.76
COL7A1-203ENST00000459756 MAP1LC3AQ9H492 121 aa10.33□□□□□ -0.76
COL7A1-203ENST00000459756 UBE2D4Q9Y2X8 147 aa10.33□□□□□ -0.76
COL7A1-203ENST00000459756 FABP9Q0Z7S8 132 aa10.32□□□□□ -0.76
COL7A1-203ENST00000459756 CIRBPQ14011 172 aaKnown RBP10.32□□□□□ -0.76
COL7A1-203ENST00000459756 COX19Q49B96 90 aa10.32□□□□□ -0.76
COL7A1-203ENST00000459756 CD164L2Q6UWJ8 174 aa10.32□□□□□ -0.76
COL7A1-203ENST00000459756 TIMM21Q9BVV7 248 aa10.32□□□□□ -0.76
COL7A1-203ENST00000459756 IGHV1-58A0A0C4DH39 117 aa10.31□□□□□ -0.76
COL7A1-203ENST00000459756 PANO1I0J062 215 aa10.31□□□□□ -0.76
COL7A1-203ENST00000459756 MT-ND6P03923 174 aa10.31□□□□□ -0.76
COL7A1-203ENST00000459756 LAMTOR2Q9Y2Q5 125 aa10.31□□□□□ -0.76
COL7A1-203ENST00000459756 TRAPPC1Q9Y5R8 145 aa10.31□□□□□ -0.76
COL7A1-203ENST00000459756 C1orf196B1AJZ1 125 aa10.3□□□□□ -0.76
COL7A1-203ENST00000459756 RAB5AP20339 215 aa10.3□□□□□ -0.76
COL7A1-203ENST00000459756 KRTAP10-4P60372 401 aaPredicted RBP10.3□□□□□ -0.76
COL7A1-203ENST00000459756 SMCO4Q9NRQ5 59 aa10.3□□□□□ -0.76
COL7A1-203ENST00000459756 HERC1Q15751 4861 aa10.29□□□□□ -0.76
COL7A1-203ENST00000459756 DPH3Q96FX2 82 aa10.29□□□□□ -0.76
COL7A1-203ENST00000459756 CHTF8P0CG12 524 aa10.27□□□□□ -0.77
COL7A1-203ENST00000459756 IFI27P40305 119 aaPredicted RBP10.27□□□□□ -0.77
COL7A1-203ENST00000459756 RPL37AP61513 92 aaKnown RBP10.27□□□□□ -0.77
COL7A1-203ENST00000459756 RPL39P62891 51 aaKnown RBP10.27□□□□□ -0.77
COL7A1-203ENST00000459756 COX6A2Q02221 97 aa10.27□□□□□ -0.77
COL7A1-203ENST00000459756 RNASE13Q5GAN3 156 aaKnown RBP10.27□□□□□ -0.77
COL7A1-203ENST00000459756 Q6ZUT4 128 aa10.27□□□□□ -0.77
COL7A1-203ENST00000459756 Q8N8P6 123 aa10.27□□□□□ -0.77
COL7A1-203ENST00000459756 SPACA4Q8TDM5 124 aa10.27□□□□□ -0.77
COL7A1-203ENST00000459756 YPEL4Q96NS1 127 aa10.27□□□□□ -0.77
COL7A1-203ENST00000459756 ALKBH7Q9BT30 221 aaPredicted RBP10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms