RNA–Protein interactions for RNA: ENST00000452372.1

COL9A3-202, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 596 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-202ENST00000452372 KRTAP26-1Q6PEX3 210 aa13.15□□□□□ -0.3
COL9A3-202ENST00000452372 LAMTOR2Q9Y2Q5 125 aa13.15□□□□□ -0.3
COL9A3-202ENST00000452372 NDUFA5Q16718 116 aa13.14□□□□□ -0.31
COL9A3-202ENST00000452372 MRPL52Q86TS9 123 aaKnown RBP13.14□□□□□ -0.31
COL9A3-202ENST00000452372 TMEM101Q96IK0 257 aa13.14□□□□□ -0.31
COL9A3-202ENST00000452372 IGLV10-54A0A075B6I4 117 aa13.13□□□□□ -0.31
COL9A3-202ENST00000452372 PRSS47A8MTI9 375 aa13.13□□□□□ -0.31
COL9A3-202ENST00000452372 SVBPQ8N300 66 aa13.13□□□□□ -0.31
COL9A3-202ENST00000452372 SNAPINO95295 136 aa13.12□□□□□ -0.31
COL9A3-202ENST00000452372 OR5A1Q8NGJ0 315 aa13.12□□□□□ -0.31
COL9A3-202ENST00000452372 HLA-DQA1P01909 254 aa13.11□□□□□ -0.31
COL9A3-202ENST00000452372 GNB1LQ9BYB4 327 aa13.11□□□□□ -0.31
COL9A3-202ENST00000452372 CDC42SE2Q9NRR3 84 aa13.11□□□□□ -0.31
COL9A3-202ENST00000452372 IGLV5-52A0A0A0MRZ9 124 aa13.1□□□□□ -0.31
COL9A3-202ENST00000452372 SMAGPQ0VAQ4 97 aa13.1□□□□□ -0.31
COL9A3-202ENST00000452372 COX19Q49B96 90 aa13.1□□□□□ -0.31
COL9A3-202ENST00000452372 TMEM18Q96B42 140 aa13.1□□□□□ -0.31
COL9A3-202ENST00000452372 MAP1LC3AQ9H492 121 aa13.1□□□□□ -0.31
COL9A3-202ENST00000452372 CSDC2Q9Y534 153 aaKnown RBP13.1□□□□□ -0.31
COL9A3-202ENST00000452372 VPS13BQ7Z7G8 4022 aa13.1□□□□□ -0.31
COL9A3-202ENST00000452372 IGKV3OR2-268A0A0C4DH90 116 aa13.09□□□□□ -0.31
COL9A3-202ENST00000452372 DGAT2L7PQ6IED9 249 aa13.09□□□□□ -0.31
COL9A3-202ENST00000452372 UBE2D4Q9Y2X8 147 aa13.09□□□□□ -0.31
COL9A3-202ENST00000452372 LOC389332A0A1B0GUA5 103 aa13.08□□□□□ -0.32
COL9A3-202ENST00000452372 RAB5AP20339 215 aa13.08□□□□□ -0.32
COL9A3-202ENST00000452372 GCSHP23434 173 aa13.08□□□□□ -0.32
COL9A3-202ENST00000452372 XGP55808 180 aa13.08□□□□□ -0.32
COL9A3-202ENST00000452372 C14orf177Q52M58 125 aa13.08□□□□□ -0.32
COL9A3-202ENST00000452372 ZNF664Q8N3J9 261 aa13.08□□□□□ -0.32
COL9A3-202ENST00000452372 TIMM21Q9BVV7 248 aa13.08□□□□□ -0.32
COL9A3-202ENST00000452372 USP17L23D6RBM5 183 aa13.07□□□□□ -0.32
COL9A3-202ENST00000452372 IGLV2-33A0A075B6J2 118 aaPredicted RBP13.06□□□□□ -0.32
COL9A3-202ENST00000452372 KRTAP10-1P60331 282 aa13.06□□□□□ -0.32
COL9A3-202ENST00000452372 KIAA1644Q3SXP7 199 aa13.06□□□□□ -0.32
COL9A3-202ENST00000452372 Q8N8P6 123 aa13.06□□□□□ -0.32
COL9A3-202ENST00000452372 RPL39P62891 51 aaKnown RBP13.05□□□□□ -0.32
COL9A3-202ENST00000452372 SLC7A5P1Q8MH63 180 aa13.05□□□□□ -0.32
COL9A3-202ENST00000452372 CHCHD10Q8WYQ3 142 aaPredicted RBP13.05□□□□□ -0.32
COL9A3-202ENST00000452372 DNAH8Q96JB1 4490 aa13.05□□□□□ -0.32
COL9A3-202ENST00000452372 LINC00959A0A1B0GUT2 108 aa13.04□□□□□ -0.32
COL9A3-202ENST00000452372 GAGE12HA6NDE8 117 aa13.04□□□□□ -0.32
COL9A3-202ENST00000452372 MT-ND6P03923 174 aa13.04□□□□□ -0.32
COL9A3-202ENST00000452372 SPANXA1Q9NS26 97 aa13.03□□□□□ -0.32
COL9A3-202ENST00000452372 HERC1Q15751 4861 aa13.03□□□□□ -0.32
COL9A3-202ENST00000452372 TGIF2-C20orf24A0A0A6YYL0 155 aa13.02□□□□□ -0.33
COL9A3-202ENST00000452372 K7EMI3 77 aa13.02□□□□□ -0.33
COL9A3-202ENST00000452372 PRSS1P07477 247 aa13.02□□□□□ -0.33
COL9A3-202ENST00000452372 MRPL18Q9H0U6 180 aaKnown RBP13.02□□□□□ -0.33
COL9A3-202ENST00000452372 NXT2Q9NPJ8 142 aaKnown RBP13.02□□□□□ -0.33
COL9A3-202ENST00000452372 SS18Q15532 418 aa13.01□□□□□ -0.33
COL9A3-202ENST00000452372 CCL25O15444 150 aa13□□□□□ -0.33
COL9A3-202ENST00000452372 IFI27P40305 119 aaPredicted RBP13□□□□□ -0.33
COL9A3-202ENST00000452372 FABP9Q0Z7S8 132 aa13□□□□□ -0.33
COL9A3-202ENST00000452372 ORMDL2Q53FV1 153 aa13□□□□□ -0.33
COL9A3-202ENST00000452372 Q6ZUT4 128 aa13□□□□□ -0.33
COL9A3-202ENST00000452372 FAM104AQ969W3 186 aa13□□□□□ -0.33
COL9A3-202ENST00000452372 ALKBH7Q9BT30 221 aaPredicted RBP13□□□□□ -0.33
COL9A3-202ENST00000452372 XCL1P47992 114 aa12.99□□□□□ -0.33
COL9A3-202ENST00000452372 MRPS36P82909 103 aaKnown RBP12.99□□□□□ -0.33
COL9A3-202ENST00000452372 FOXI1Q12951 378 aa12.99□□□□□ -0.33
COL9A3-202ENST00000452372 RNASE13Q5GAN3 156 aaKnown RBP12.99□□□□□ -0.33
COL9A3-202ENST00000452372 PYGO1Q9Y3Y4 419 aa12.99□□□□□ -0.33
COL9A3-202ENST00000452372 C1orf196B1AJZ1 125 aa12.98□□□□□ -0.33
COL9A3-202ENST00000452372 EPM2AB3EWF7 344 aa12.98□□□□□ -0.33
COL9A3-202ENST00000452372 CFAP161Q6P656 301 aa12.98□□□□□ -0.33
COL9A3-202ENST00000452372 SRRM2Q9UQ35 2752 aaKnown RBP12.98□□□□□ -0.33
COL9A3-202ENST00000452372 CD164L2Q6UWJ8 174 aa12.97□□□□□ -0.33
COL9A3-202ENST00000452372 OPRPNQ99935 248 aaPredicted RBP12.97□□□□□ -0.33
COL9A3-202ENST00000452372 hDV102S1A0JD36 115 aa12.96□□□□□ -0.33
COL9A3-202ENST00000452372 C2orf66Q6UXQ4 117 aa12.96□□□□□ -0.33
COL9A3-202ENST00000452372 C15orf56Q8N910 161 aa12.96□□□□□ -0.33
COL9A3-202ENST00000452372 PRSS3P2Q8NHM4 247 aa12.96□□□□□ -0.33
COL9A3-202ENST00000452372 YPEL4Q96NS1 127 aa12.96□□□□□ -0.33
COL9A3-202ENST00000452372 CYSLTR1Q9Y271 337 aa12.96□□□□□ -0.33
COL9A3-202ENST00000452372 TRAPPC1Q9Y5R8 145 aa12.96□□□□□ -0.33
COL9A3-202ENST00000452372 TRAV13-1A0A0B4J241 112 aa12.95□□□□□ -0.34
COL9A3-202ENST00000452372 LINC01620Q4KN68 170 aa12.95□□□□□ -0.34
COL9A3-202ENST00000452372 G0S2P27469 103 aa12.94□□□□□ -0.34
COL9A3-202ENST00000452372 FLG2Q5D862 2391 aaPredicted RBP12.94□□□□□ -0.34
COL9A3-202ENST00000452372 CNBPP62633 177 aaKnown RBP12.93□□□□□ -0.34
COL9A3-202ENST00000452372 SMCO4Q9NRQ5 59 aa12.93□□□□□ -0.34
COL9A3-202ENST00000452372 AP5S1Q9NUS5 200 aa12.93□□□□□ -0.34
COL9A3-202ENST00000452372 FAM30AQ9NZY2 134 aa12.93□□□□□ -0.34
COL9A3-202ENST00000452372 DMBT1Q9UGM3 2413 aaPredicted RBP12.92□□□□□ -0.34
COL9A3-202ENST00000452372 MYCBP2O75592 4640 aa12.92□□□□□ -0.34
COL9A3-202ENST00000452372 IGLV4-3A0A075B6K6 122 aa12.92□□□□□ -0.34
COL9A3-202ENST00000452372 LINC01546A6NGU7 62 aa12.92□□□□□ -0.34
COL9A3-202ENST00000452372 C9orf163Q8N9P6 203 aa12.92□□□□□ -0.34
COL9A3-202ENST00000452372 SLPIP03973 132 aa12.91□□□□□ -0.34
COL9A3-202ENST00000452372 NPSP0C0P6 89 aa12.91□□□□□ -0.34
COL9A3-202ENST00000452372 TMEM141Q96I45 108 aa12.91□□□□□ -0.34
COL9A3-202ENST00000452372 GVQW2A0A096LPI5 108 aaPredicted RBP12.9□□□□□ -0.34
COL9A3-202ENST00000452372 IGHV1-58A0A0C4DH39 117 aa12.9□□□□□ -0.34
COL9A3-202ENST00000452372 IGIPA6NJ69 53 aa12.9□□□□□ -0.34
COL9A3-202ENST00000452372 IFITM10A6NMD0 228 aa12.9□□□□□ -0.34
COL9A3-202ENST00000452372 Q6ZSA8 131 aa12.9□□□□□ -0.34
COL9A3-202ENST00000452372 CBLN2Q8IUK8 224 aa12.9□□□□□ -0.34
COL9A3-202ENST00000452372 SMR3BP02814 79 aaPredicted RBP12.89□□□□□ -0.35
COL9A3-202ENST00000452372 INAFM2P0DMQ5 153 aa12.89□□□□□ -0.35
COL9A3-202ENST00000452372 HIGD2BQ4VC39 106 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms