RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 GATD1Q8NB37 220 aa4.53□□□□□ -1.68
VPS41-208ENST00000448833 RNASE7Q9H1E1 156 aaKnown RBP4.53□□□□□ -1.68
VPS41-208ENST00000448833 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP4.53□□□□□ -1.68
VPS41-208ENST00000448833 TRBV6-5A0A0K0K1A5 114 aa4.52□□□□□ -1.69
VPS41-208ENST00000448833 GAGE12HA6NDE8 117 aa4.52□□□□□ -1.69
VPS41-208ENST00000448833 SDHAF1A6NFY7 115 aa4.52□□□□□ -1.69
VPS41-208ENST00000448833 CCL25O15444 150 aa4.52□□□□□ -1.69
VPS41-208ENST00000448833 OR5A1Q8NGJ0 315 aa4.52□□□□□ -1.69
VPS41-208ENST00000448833 SPACA4Q8TDM5 124 aa4.52□□□□□ -1.69
VPS41-208ENST00000448833 GFRA4Q9GZZ7 299 aa4.52□□□□□ -1.69
VPS41-208ENST00000448833 ST20Q9HBF5 79 aa4.52□□□□□ -1.69
VPS41-208ENST00000448833 PLAC8Q9NZF1 115 aa4.52□□□□□ -1.69
VPS41-208ENST00000448833 PLA2G2DQ9UNK4 145 aa4.52□□□□□ -1.69
VPS41-208ENST00000448833 A0A087WYN8 130 aa4.51□□□□□ -1.69
VPS41-208ENST00000448833 IGKV3OR2-268A0A0C4DH90 116 aa4.51□□□□□ -1.69
VPS41-208ENST00000448833 A0A1B0GUT8 65 aa4.51□□□□□ -1.69
VPS41-208ENST00000448833 K7EN84 100 aa4.51□□□□□ -1.69
VPS41-208ENST00000448833 FGF6P10767 208 aa4.51□□□□□ -1.69
VPS41-208ENST00000448833 SS18Q15532 418 aa4.51□□□□□ -1.69
VPS41-208ENST00000448833 PET117Q6UWS5 81 aa4.51□□□□□ -1.69
VPS41-208ENST00000448833 GTSF1Q8WW33 167 aa4.51□□□□□ -1.69
VPS41-208ENST00000448833 CHCHD10Q8WYQ3 142 aaPredicted RBP4.51□□□□□ -1.69
VPS41-208ENST00000448833 MRAP2Q96G30 205 aa4.51□□□□□ -1.69
VPS41-208ENST00000448833 EIF5A2Q9GZV4 153 aaKnown RBP4.51□□□□□ -1.69
VPS41-208ENST00000448833 GVQW2A0A096LPI5 108 aaPredicted RBP4.5□□□□□ -1.69
VPS41-208ENST00000448833 TRAV26-2A0A0B4J265 109 aa4.5□□□□□ -1.69
VPS41-208ENST00000448833 IGHV1-58A0A0C4DH39 117 aa4.5□□□□□ -1.69
VPS41-208ENST00000448833 VCYO14598 125 aa4.5□□□□□ -1.69
VPS41-208ENST00000448833 SRSF3P84103 164 aaKnown RBP4.5□□□□□ -1.69
VPS41-208ENST00000448833 COX6A2Q02221 97 aa4.5□□□□□ -1.69
VPS41-208ENST00000448833 C15orf56Q8N910 161 aa4.5□□□□□ -1.69
VPS41-208ENST00000448833 LYPD6BQ8NI32 183 aa4.5□□□□□ -1.69
VPS41-208ENST00000448833 TSKUQ8WUA8 353 aa4.5□□□□□ -1.69
VPS41-208ENST00000448833 ISOC2Q96AB3 205 aa4.5□□□□□ -1.69
VPS41-208ENST00000448833 RPL39LQ96EH5 51 aaKnown RBP4.5□□□□□ -1.69
VPS41-208ENST00000448833 SMIM7Q9BQ49 75 aa4.5□□□□□ -1.69
VPS41-208ENST00000448833 TMEM191AQ9H0A3 160 aa4.5□□□□□ -1.69
VPS41-208ENST00000448833 IGKV2D-29A0A075B6S2 120 aaPredicted RBP4.49□□□□□ -1.69
VPS41-208ENST00000448833 TRBV27A0A0K0K1C4 114 aa4.49□□□□□ -1.69
VPS41-208ENST00000448833 LINC00959A0A1B0GUT2 108 aa4.49□□□□□ -1.69
VPS41-208ENST00000448833 IGKV2-29A2NJV5 120 aaPredicted RBP4.49□□□□□ -1.69
VPS41-208ENST00000448833 ZNF727A8MUV8 499 aa4.49□□□□□ -1.69
VPS41-208ENST00000448833 C1orf196B1AJZ1 125 aa4.49□□□□□ -1.69
VPS41-208ENST00000448833 PANO1I0J062 215 aa4.49□□□□□ -1.69
VPS41-208ENST00000448833 PPP1R2P9O14990 202 aa4.49□□□□□ -1.69
VPS41-208ENST00000448833 TCAPO15273 167 aa4.49□□□□□ -1.69
VPS41-208ENST00000448833 SLPIP03973 132 aa4.49□□□□□ -1.69
VPS41-208ENST00000448833 ESDP10768 282 aa4.49□□□□□ -1.69
VPS41-208ENST00000448833 CEBPGP53567 150 aa4.49□□□□□ -1.69
VPS41-208ENST00000448833 RIGQ13278 110 aa4.49□□□□□ -1.69
VPS41-208ENST00000448833 FAM74A3Q4VXF1 159 aa4.49□□□□□ -1.69
VPS41-208ENST00000448833 CD164L2Q6UWJ8 174 aa4.49□□□□□ -1.69
VPS41-208ENST00000448833 MRPL52Q86TS9 123 aaKnown RBP4.49□□□□□ -1.69
VPS41-208ENST00000448833 TMEM18Q96B42 140 aa4.49□□□□□ -1.69
VPS41-208ENST00000448833 KRTAP4-11Q9BYQ6 195 aa4.49□□□□□ -1.69
VPS41-208ENST00000448833 OSTCQ9NRP0 149 aa4.49□□□□□ -1.69
VPS41-208ENST00000448833 CSDC2Q9Y534 153 aaKnown RBP4.49□□□□□ -1.69
VPS41-208ENST00000448833 LRP1Q07954 4544 aaKnown RBP4.48□□□□□ -1.69
VPS41-208ENST00000448833 C7orf77A4D0Y5 90 aa4.48□□□□□ -1.69
VPS41-208ENST00000448833 HIGD1CA8MV81 97 aa4.48□□□□□ -1.69
VPS41-208ENST00000448833 FCER1GP30273 86 aa4.48□□□□□ -1.69
VPS41-208ENST00000448833 XCL1P47992 114 aa4.48□□□□□ -1.69
VPS41-208ENST00000448833 POLR2KP53803 58 aaKnown RBP4.48□□□□□ -1.69
VPS41-208ENST00000448833 FOXI1Q12951 378 aa4.48□□□□□ -1.69
VPS41-208ENST00000448833 HIGD2BQ4VC39 106 aa4.48□□□□□ -1.69
VPS41-208ENST00000448833 ALKAL2Q6UX46 152 aa4.48□□□□□ -1.69
VPS41-208ENST00000448833 LINC01551Q86U37 167 aa4.48□□□□□ -1.69
VPS41-208ENST00000448833 ZNF664Q8N3J9 261 aa4.48□□□□□ -1.69
VPS41-208ENST00000448833 STPG4Q8N801 248 aa4.48□□□□□ -1.69
VPS41-208ENST00000448833 KIR2DL4Q99706 377 aa4.48□□□□□ -1.69
VPS41-208ENST00000448833 CDC42SE2Q9NRR3 84 aa4.48□□□□□ -1.69
VPS41-208ENST00000448833 FAT3Q8TDW7 4589 aa4.47□□□□□ -1.69
VPS41-208ENST00000448833 IGKV2-24A0A0C4DH68 120 aa4.47□□□□□ -1.69
VPS41-208ENST00000448833 A0A1B0GW15 77 aa4.47□□□□□ -1.69
VPS41-208ENST00000448833 LINC00862A6NCI5 91 aa4.47□□□□□ -1.69
VPS41-208ENST00000448833 PHOX2AO14813 284 aa4.47□□□□□ -1.69
VPS41-208ENST00000448833 APOMO95445 188 aa4.47□□□□□ -1.69
VPS41-208ENST00000448833 TSHBP01222 138 aa4.47□□□□□ -1.69
VPS41-208ENST00000448833 S100A8P05109 93 aa4.47□□□□□ -1.69
VPS41-208ENST00000448833 CHTF8P0CG12 524 aa4.47□□□□□ -1.69
VPS41-208ENST00000448833 RAB4AP20338 218 aa4.47□□□□□ -1.69
VPS41-208ENST00000448833 MALP21145 153 aa4.47□□□□□ -1.69
VPS41-208ENST00000448833 SYCNQ0VAF6 134 aa4.47□□□□□ -1.69
VPS41-208ENST00000448833 TMEM241Q24JQ0 296 aa4.47□□□□□ -1.69
VPS41-208ENST00000448833 REG3GQ6UW15 175 aa4.47□□□□□ -1.69
VPS41-208ENST00000448833 PRSS3P2Q8NHM4 247 aa4.47□□□□□ -1.69
VPS41-208ENST00000448833 CARD19Q96LW7 228 aa4.47□□□□□ -1.69
VPS41-208ENST00000448833 NAT8BQ9UHF3 227 aa4.47□□□□□ -1.69
VPS41-208ENST00000448833 PKHD1L1Q86WI1 4243 aa4.47□□□□□ -1.69
VPS41-208ENST00000448833 LOC107984640A0A0U1RRK4 108 aa4.46□□□□□ -1.7
VPS41-208ENST00000448833 F8WDY8 70 aa4.46□□□□□ -1.7
VPS41-208ENST00000448833 COX7A2LO14548 114 aa4.46□□□□□ -1.7
VPS41-208ENST00000448833 HNRNPA3P51991 378 aaKnown RBP4.46□□□□□ -1.7
VPS41-208ENST00000448833 SUMO2P61956 95 aaKnown RBP4.46□□□□□ -1.7
VPS41-208ENST00000448833 SPINK6Q6UWN8 80 aa4.46□□□□□ -1.7
VPS41-208ENST00000448833 C20orf78Q9BR46 151 aa4.46□□□□□ -1.7
VPS41-208ENST00000448833 TIMM21Q9BVV7 248 aa4.46□□□□□ -1.7
VPS41-208ENST00000448833 SMDT1Q9H4I9 107 aa4.46□□□□□ -1.7
VPS41-208ENST00000448833 TMEM242Q9NWH2 141 aa4.46□□□□□ -1.7
VPS41-208ENST00000448833 IGLV4-69A0A075B6H9 119 aa4.45□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 127.6 ms