RNA–Protein interactions for RNA: ENST00000448428.1

PRPF40A-203, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 5

Gene PRPF40A, Length 490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-203ENST00000448428 D6R8Y8 96 aa8.23□□□□□ -1.09
PRPF40A-203ENST00000448428 MT-ND4LP03901 98 aa8.23□□□□□ -1.09
PRPF40A-203ENST00000448428 SLPIP03973 132 aa8.23□□□□□ -1.09
PRPF40A-203ENST00000448428 SCXQ7RTU7 201 aa8.23□□□□□ -1.09
PRPF40A-203ENST00000448428 ATP5L2Q7Z4Y8 100 aa8.23□□□□□ -1.09
PRPF40A-203ENST00000448428 KIR2DL4Q99706 377 aa8.23□□□□□ -1.09
PRPF40A-203ENST00000448428 CHAC1Q9BUX1 264 aa8.23□□□□□ -1.09
PRPF40A-203ENST00000448428 CDC42SE2Q9NRR3 84 aa8.23□□□□□ -1.09
PRPF40A-203ENST00000448428 LINC00959A0A1B0GUT2 108 aa8.22□□□□□ -1.09
PRPF40A-203ENST00000448428 INAFM2P0DMQ5 153 aa8.22□□□□□ -1.09
PRPF40A-203ENST00000448428 RPL32P62910 135 aaKnown RBP8.22□□□□□ -1.09
PRPF40A-203ENST00000448428 ZNF664Q8N3J9 261 aa8.22□□□□□ -1.09
PRPF40A-203ENST00000448428 C15orf56Q8N910 161 aa8.22□□□□□ -1.09
PRPF40A-203ENST00000448428 NPYP01303 97 aa8.21□□□□□ -1.1
PRPF40A-203ENST00000448428 PPBPP02775 128 aa8.21□□□□□ -1.1
PRPF40A-203ENST00000448428 CNBPP62633 177 aaKnown RBP8.21□□□□□ -1.1
PRPF40A-203ENST00000448428 FOXI1Q12951 378 aa8.21□□□□□ -1.1
PRPF40A-203ENST00000448428 CFAP161Q6P656 301 aa8.21□□□□□ -1.1
PRPF40A-203ENST00000448428 SDIM1Q6ZPB5 146 aa8.21□□□□□ -1.1
PRPF40A-203ENST00000448428 CIRBP-AS1Q8TBR5 109 aa8.21□□□□□ -1.1
PRPF40A-203ENST00000448428 AP5S1Q9NUS5 200 aa8.21□□□□□ -1.1
PRPF40A-203ENST00000448428 UBE2D4Q9Y2X8 147 aa8.21□□□□□ -1.1
PRPF40A-203ENST00000448428 CCL25O15444 150 aa8.2□□□□□ -1.1
PRPF40A-203ENST00000448428 XCL1P47992 114 aa8.2□□□□□ -1.1
PRPF40A-203ENST00000448428 UQCC3Q6UW78 93 aa8.2□□□□□ -1.1
PRPF40A-203ENST00000448428 SMIM2Q9BVW6 85 aa8.2□□□□□ -1.1
PRPF40A-203ENST00000448428 CSDC2Q9Y534 153 aaKnown RBP8.2□□□□□ -1.1
PRPF40A-203ENST00000448428 TMEM218A2RU14 115 aa8.19□□□□□ -1.1
PRPF40A-203ENST00000448428 PHOX2AO14813 284 aa8.19□□□□□ -1.1
PRPF40A-203ENST00000448428 ADCYAP1P18509 176 aa8.19□□□□□ -1.1
PRPF40A-203ENST00000448428 SS18Q15532 418 aa8.19□□□□□ -1.1
PRPF40A-203ENST00000448428 TMEM136Q6ZRR5 245 aa8.19□□□□□ -1.1
PRPF40A-203ENST00000448428 ORMDL3Q8N138 153 aa8.19□□□□□ -1.1
PRPF40A-203ENST00000448428 LINC00528Q8N1L1 170 aa8.19□□□□□ -1.1
PRPF40A-203ENST00000448428 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.18□□□□□ -1.1
PRPF40A-203ENST00000448428 PANO1I0J062 215 aa8.18□□□□□ -1.1
PRPF40A-203ENST00000448428 TCAPO15273 167 aa8.18□□□□□ -1.1
PRPF40A-203ENST00000448428 SMAGPQ0VAQ4 97 aa8.18□□□□□ -1.1
PRPF40A-203ENST00000448428 HIGD2BQ4VC39 106 aa8.18□□□□□ -1.1
PRPF40A-203ENST00000448428 RNASE13Q5GAN3 156 aaKnown RBP8.18□□□□□ -1.1
PRPF40A-203ENST00000448428 TMEM18Q96B42 140 aa8.18□□□□□ -1.1
PRPF40A-203ENST00000448428 PRELID3AQ96N28 172 aa8.18□□□□□ -1.1
PRPF40A-203ENST00000448428 TIMM21Q9BVV7 248 aa8.18□□□□□ -1.1
PRPF40A-203ENST00000448428 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.18□□□□□ -1.1
PRPF40A-203ENST00000448428 RPL39P62891 51 aaKnown RBP8.17□□□□□ -1.1
PRPF40A-203ENST00000448428 CD164L2Q6UWJ8 174 aa8.17□□□□□ -1.1
PRPF40A-203ENST00000448428 DNAH8Q96JB1 4490 aa8.17□□□□□ -1.1
PRPF40A-203ENST00000448428 IGHV3-64A0A075B6Q5 118 aa8.16□□□□□ -1.1
PRPF40A-203ENST00000448428 GVQW2A0A096LPI5 108 aaPredicted RBP8.16□□□□□ -1.1
PRPF40A-203ENST00000448428 PRSS47A8MTI9 375 aa8.16□□□□□ -1.1
PRPF40A-203ENST00000448428 C1orf196B1AJZ1 125 aa8.16□□□□□ -1.1
PRPF40A-203ENST00000448428 PLA2G1BP04054 148 aaKnown RBP8.16□□□□□ -1.1
PRPF40A-203ENST00000448428 Q6ZUT4 128 aa8.16□□□□□ -1.1
PRPF40A-203ENST00000448428 FAM104AQ969W3 186 aa8.16□□□□□ -1.1
PRPF40A-203ENST00000448428 IMMP2LQ96T52 175 aa8.16□□□□□ -1.1
PRPF40A-203ENST00000448428 COMMD7Q86VX2 200 aa8.15□□□□□ -1.1
PRPF40A-203ENST00000448428 OPRPNQ99935 248 aaPredicted RBP8.15□□□□□ -1.1
PRPF40A-203ENST00000448428 SEC11CQ9BY50 192 aa8.15□□□□□ -1.1
PRPF40A-203ENST00000448428 CTDSP1Q9GZU7 261 aa8.15□□□□□ -1.1
PRPF40A-203ENST00000448428 FAT1Q14517 4588 aa8.14□□□□□ -1.11
PRPF40A-203ENST00000448428 TRAV13-1A0A0B4J241 112 aa8.14□□□□□ -1.11
PRPF40A-203ENST00000448428 IGHV1-58A0A0C4DH39 117 aa8.14□□□□□ -1.11
PRPF40A-203ENST00000448428 LOC389332A0A1B0GUA5 103 aa8.14□□□□□ -1.11
PRPF40A-203ENST00000448428 RAB5AP20339 215 aa8.14□□□□□ -1.11
PRPF40A-203ENST00000448428 LINC00526Q96FQ7 95 aa8.14□□□□□ -1.11
PRPF40A-203ENST00000448428 LAMTOR2Q9Y2Q5 125 aa8.14□□□□□ -1.11
PRPF40A-203ENST00000448428 CHTF8P0CG12 524 aa8.13□□□□□ -1.11
PRPF40A-203ENST00000448428 CIRBPQ14011 172 aaKnown RBP8.13□□□□□ -1.11
PRPF40A-203ENST00000448428 DPH3Q96FX2 82 aa8.13□□□□□ -1.11
PRPF40A-203ENST00000448428 SPANXA1Q9NS26 97 aa8.13□□□□□ -1.11
PRPF40A-203ENST00000448428 KRTAP10-4P60372 401 aaPredicted RBP8.12□□□□□ -1.11
PRPF40A-203ENST00000448428 MRPS36P82909 103 aaKnown RBP8.12□□□□□ -1.11
PRPF40A-203ENST00000448428 COX6A2Q02221 97 aa8.12□□□□□ -1.11
PRPF40A-203ENST00000448428 PRSS3P2Q8NHM4 247 aa8.12□□□□□ -1.11
PRPF40A-203ENST00000448428 MAP1LC3AQ9H492 121 aa8.12□□□□□ -1.11
PRPF40A-203ENST00000448428 SRRM2Q9UQ35 2752 aaKnown RBP8.11□□□□□ -1.11
PRPF40A-203ENST00000448428 COX7A2LO14548 114 aa8.11□□□□□ -1.11
PRPF40A-203ENST00000448428 MALP21145 153 aa8.11□□□□□ -1.11
PRPF40A-203ENST00000448428 C10orf91Q5T1B1 145 aa8.11□□□□□ -1.11
PRPF40A-203ENST00000448428 C5orf38Q86SI9 138 aa8.11□□□□□ -1.11
PRPF40A-203ENST00000448428 Q8N8P6 123 aa8.11□□□□□ -1.11
PRPF40A-203ENST00000448428 VPS13BQ7Z7G8 4022 aa8.1□□□□□ -1.11
PRPF40A-203ENST00000448428 TRAV9-1A0A075B6T8 112 aa8.1□□□□□ -1.11
PRPF40A-203ENST00000448428 A0A087WYN8 130 aa8.1□□□□□ -1.11
PRPF40A-203ENST00000448428 ZNF561-AS1K7EIQ3 104 aa8.1□□□□□ -1.11
PRPF40A-203ENST00000448428 SPACA4Q8TDM5 124 aa8.1□□□□□ -1.11
PRPF40A-203ENST00000448428 PYGO1Q9Y3Y4 419 aa8.1□□□□□ -1.11
PRPF40A-203ENST00000448428 IFI27P40305 119 aaPredicted RBP8.09□□□□□ -1.11
PRPF40A-203ENST00000448428 KIAA1644Q3SXP7 199 aa8.09□□□□□ -1.11
PRPF40A-203ENST00000448428 FLG2Q5D862 2391 aaPredicted RBP8.08□□□□□ -1.12
PRPF40A-203ENST00000448428 IGLV4-69A0A075B6H9 119 aa8.08□□□□□ -1.12
PRPF40A-203ENST00000448428 IGLV4-3A0A075B6K6 122 aa8.08□□□□□ -1.12
PRPF40A-203ENST00000448428 S100PP25815 95 aa8.08□□□□□ -1.12
PRPF40A-203ENST00000448428 SYCNQ0VAF6 134 aa8.08□□□□□ -1.12
PRPF40A-203ENST00000448428 CARD19Q96LW7 228 aa8.08□□□□□ -1.12
PRPF40A-203ENST00000448428 CARHSP1Q9Y2V2 147 aaKnown RBP8.08□□□□□ -1.12
PRPF40A-203ENST00000448428 A0A096LNI7 61 aa8.07□□□□□ -1.12
PRPF40A-203ENST00000448428 IGHV3OR16-9A0A0B4J2B5 98 aa8.07□□□□□ -1.12
PRPF40A-203ENST00000448428 IGKV2-24A0A0C4DH68 120 aa8.07□□□□□ -1.12
PRPF40A-203ENST00000448428 IFITM10A6NMD0 228 aa8.07□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 108.4 ms