RNA–Protein interactions for RNA: ENST00000422991.1

COL7A1-202, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 597 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-202ENST00000422991 RTL8CO15255 209 aa11.38□□□□□ -0.59
COL7A1-202ENST00000422991 LINC00614P0C842 121 aa11.38□□□□□ -0.59
COL7A1-202ENST00000422991 RAB5BP61020 215 aa11.38□□□□□ -0.59
COL7A1-202ENST00000422991 Q0VG73 95 aa11.38□□□□□ -0.59
COL7A1-202ENST00000422991 G0S2P27469 103 aa11.37□□□□□ -0.59
COL7A1-202ENST00000422991 REG3AQ06141 175 aa11.37□□□□□ -0.59
COL7A1-202ENST00000422991 DGAT2L7PQ6IED9 249 aa11.37□□□□□ -0.59
COL7A1-202ENST00000422991 Q6ZUT4 128 aa11.37□□□□□ -0.59
COL7A1-202ENST00000422991 ZNF664Q8N3J9 261 aa11.37□□□□□ -0.59
COL7A1-202ENST00000422991 CDC42SE2Q9NRR3 84 aa11.37□□□□□ -0.59
COL7A1-202ENST00000422991 PYGO1Q9Y3Y4 419 aa11.37□□□□□ -0.59
COL7A1-202ENST00000422991 MIAQ16674 131 aa11.36□□□□□ -0.59
COL7A1-202ENST00000422991 FAM104AQ969W3 186 aa11.36□□□□□ -0.59
COL7A1-202ENST00000422991 TOMM6Q96B49 74 aa11.36□□□□□ -0.59
COL7A1-202ENST00000422991 MRPS36P82909 103 aaKnown RBP11.35□□□□□ -0.59
COL7A1-202ENST00000422991 BAGE3Q86Y29 109 aa11.35□□□□□ -0.59
COL7A1-202ENST00000422991 CHCHD1Q96BP2 118 aaKnown RBP11.35□□□□□ -0.59
COL7A1-202ENST00000422991 RMI2Q96E14 147 aa11.35□□□□□ -0.59
COL7A1-202ENST00000422991 FAT2Q9NYQ8 4349 aa11.34□□□□□ -0.59
COL7A1-202ENST00000422991 A0A096LNJ9 63 aa11.34□□□□□ -0.59
COL7A1-202ENST00000422991 HIST1H2BKO60814 126 aa11.34□□□□□ -0.59
COL7A1-202ENST00000422991 HIST1H2BJP06899 126 aa11.34□□□□□ -0.59
COL7A1-202ENST00000422991 HIST1H2BOP23527 126 aa11.34□□□□□ -0.59
COL7A1-202ENST00000422991 HIST1H2BBP33778 126 aa11.34□□□□□ -0.59
COL7A1-202ENST00000422991 HIST1H2BDP58876 126 aa11.34□□□□□ -0.59
COL7A1-202ENST00000422991 HIST1H2BCP62807 126 aa11.34□□□□□ -0.59
COL7A1-202ENST00000422991 HIST2H2BEQ16778 126 aa11.34□□□□□ -0.59
COL7A1-202ENST00000422991 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.34□□□□□ -0.59
COL7A1-202ENST00000422991 HIST1H2BHQ93079 126 aa11.34□□□□□ -0.59
COL7A1-202ENST00000422991 HIST1H2BNQ99877 126 aa11.34□□□□□ -0.59
COL7A1-202ENST00000422991 HIST1H2BMQ99879 126 aa11.34□□□□□ -0.59
COL7A1-202ENST00000422991 OPRPNQ99935 248 aaPredicted RBP11.34□□□□□ -0.59
COL7A1-202ENST00000422991 IGLV4-3A0A075B6K6 122 aa11.33□□□□□ -0.6
COL7A1-202ENST00000422991 IGKV2D-24A0A075B6R9 120 aa11.33□□□□□ -0.6
COL7A1-202ENST00000422991 LINC01549A6NIU2 74 aa11.33□□□□□ -0.6
COL7A1-202ENST00000422991 IGIPA6NJ69 53 aa11.33□□□□□ -0.6
COL7A1-202ENST00000422991 LINC00310P59036 64 aa11.33□□□□□ -0.6
COL7A1-202ENST00000422991 RNASE13Q5GAN3 156 aaKnown RBP11.33□□□□□ -0.6
COL7A1-202ENST00000422991 C1orf43Q9BWL3 253 aa11.33□□□□□ -0.6
COL7A1-202ENST00000422991 TM2D2Q9BX73 214 aa11.33□□□□□ -0.6
COL7A1-202ENST00000422991 TRAV8-4A0A0B4J246 113 aa11.32□□□□□ -0.6
COL7A1-202ENST00000422991 IGKV3OR2-268A0A0C4DH90 116 aa11.32□□□□□ -0.6
COL7A1-202ENST00000422991 HBDP02042 147 aa11.32□□□□□ -0.6
COL7A1-202ENST00000422991 NPSP0C0P6 89 aa11.32□□□□□ -0.6
COL7A1-202ENST00000422991 PMCHL1Q16048 86 aa11.32□□□□□ -0.6
COL7A1-202ENST00000422991 TIMM17AQ99595 171 aa11.32□□□□□ -0.6
COL7A1-202ENST00000422991 COX11Q9Y6N1 276 aa11.32□□□□□ -0.6
COL7A1-202ENST00000422991 IGLV10-54A0A075B6I4 117 aa11.31□□□□□ -0.6
COL7A1-202ENST00000422991 SERF1AO75920 110 aa11.31□□□□□ -0.6
COL7A1-202ENST00000422991 LINC00336Q6ZUF6 198 aa11.31□□□□□ -0.6
COL7A1-202ENST00000422991 ERASQ7Z444 233 aa11.31□□□□□ -0.6
COL7A1-202ENST00000422991 TMEM141Q96I45 108 aa11.31□□□□□ -0.6
COL7A1-202ENST00000422991 SCGB3A1Q96QR1 104 aa11.31□□□□□ -0.6
COL7A1-202ENST00000422991 LINC00959A0A1B0GUT2 108 aa11.3□□□□□ -0.6
COL7A1-202ENST00000422991 C1orf196B1AJZ1 125 aa11.3□□□□□ -0.6
COL7A1-202ENST00000422991 KRTAP26-1Q6PEX3 210 aa11.3□□□□□ -0.6
COL7A1-202ENST00000422991 PSCAO43653 123 aa11.29□□□□□ -0.6
COL7A1-202ENST00000422991 HSBP1O75506 76 aa11.29□□□□□ -0.6
COL7A1-202ENST00000422991 LINC00173Q6ZV60 143 aa11.29□□□□□ -0.6
COL7A1-202ENST00000422991 HECTD4Q9Y4D8 3996 aa11.28□□□□□ -0.6
COL7A1-202ENST00000422991 PRSS29PA6NIE9 313 aa11.28□□□□□ -0.6
COL7A1-202ENST00000422991 TNP2Q05952 138 aa11.28□□□□□ -0.6
COL7A1-202ENST00000422991 PDZD11Q5EBL8 140 aa11.28□□□□□ -0.6
COL7A1-202ENST00000422991 Q6ZN92 141 aa11.28□□□□□ -0.6
COL7A1-202ENST00000422991 MAPKAPK5-AS1Q8N8E1 139 aa11.28□□□□□ -0.6
COL7A1-202ENST00000422991 CHCHD10Q8WYQ3 142 aaPredicted RBP11.28□□□□□ -0.6
COL7A1-202ENST00000422991 TRAV13-1A0A0B4J241 112 aa11.27□□□□□ -0.61
COL7A1-202ENST00000422991 IFITM10A6NMD0 228 aa11.27□□□□□ -0.61
COL7A1-202ENST00000422991 SS18Q15532 418 aa11.27□□□□□ -0.61
COL7A1-202ENST00000422991 PAPPA-AS1Q5QFB9 102 aa11.27□□□□□ -0.61
COL7A1-202ENST00000422991 TEX43Q6ZNM6 134 aa11.27□□□□□ -0.61
COL7A1-202ENST00000422991 AMELXQ99217 191 aa11.27□□□□□ -0.61
COL7A1-202ENST00000422991 PKD1P98161 4303 aa11.27□□□□□ -0.61
COL7A1-202ENST00000422991 CCL25O15444 150 aa11.26□□□□□ -0.61
COL7A1-202ENST00000422991 NUPR1O60356 82 aa11.26□□□□□ -0.61
COL7A1-202ENST00000422991 ZC2HC1BQ5TFG8 222 aa11.26□□□□□ -0.61
COL7A1-202ENST00000422991 FAM19A2Q8N3H0 131 aa11.26□□□□□ -0.61
COL7A1-202ENST00000422991 LRCOL1A6NCL2 159 aa11.25□□□□□ -0.61
COL7A1-202ENST00000422991 GAGE12HA6NDE8 117 aa11.25□□□□□ -0.61
COL7A1-202ENST00000422991 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.25□□□□□ -0.61
COL7A1-202ENST00000422991 C2orf88Q9BSF0 95 aa11.25□□□□□ -0.61
COL7A1-202ENST00000422991 VCX2Q9H322 139 aa11.25□□□□□ -0.61
COL7A1-202ENST00000422991 A0A087WTM6 91 aa11.24□□□□□ -0.61
COL7A1-202ENST00000422991 XCL1P47992 114 aa11.24□□□□□ -0.61
COL7A1-202ENST00000422991 COA6Q5JTJ3 125 aaKnown RBP11.24□□□□□ -0.61
COL7A1-202ENST00000422991 BAALCQ8WXS3 180 aa11.24□□□□□ -0.61
COL7A1-202ENST00000422991 DNAH11Q96DT5 4516 aa11.23□□□□□ -0.61
COL7A1-202ENST00000422991 ATP5LO75964 103 aa11.23□□□□□ -0.61
COL7A1-202ENST00000422991 UBE2D1P51668 147 aa11.23□□□□□ -0.61
COL7A1-202ENST00000422991 FOXI1Q12951 378 aa11.23□□□□□ -0.61
COL7A1-202ENST00000422991 WFDC2Q14508 124 aa11.23□□□□□ -0.61
COL7A1-202ENST00000422991 CD164L2Q6UWJ8 174 aa11.22□□□□□ -0.61
COL7A1-202ENST00000422991 A0A1B0GVY2 172 aa11.21□□□□□ -0.61
COL7A1-202ENST00000422991 LECT2O14960 151 aa11.21□□□□□ -0.61
COL7A1-202ENST00000422991 PMVKQ15126 192 aa11.21□□□□□ -0.61
COL7A1-202ENST00000422991 CST9LQ9H4G1 147 aa11.21□□□□□ -0.61
COL7A1-202ENST00000422991 NDUFA6P56556 154 aa11.2□□□□□ -0.62
COL7A1-202ENST00000422991 LINC00242Q5T6M2 205 aa11.2□□□□□ -0.62
COL7A1-202ENST00000422991 FAM19A3Q7Z5A8 133 aa11.2□□□□□ -0.62
COL7A1-202ENST00000422991 USP17L23D6RBM5 183 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 110.7 ms