RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 TNXBP22105 4242 aa7.22□□□□□ -1.25
USP4-204ENST00000416417 IGHV1-58A0A0C4DH39 117 aa7.22□□□□□ -1.25
USP4-204ENST00000416417 HIGD1CA8MV81 97 aa7.22□□□□□ -1.25
USP4-204ENST00000416417 ZNF25P17030 456 aaPredicted RBP7.22□□□□□ -1.25
USP4-204ENST00000416417 RAB4AP20338 218 aa7.22□□□□□ -1.25
USP4-204ENST00000416417 BORCS7Q96B45 105 aa7.22□□□□□ -1.25
USP4-204ENST00000416417 MRAP2Q96G30 205 aa7.22□□□□□ -1.25
USP4-204ENST00000416417 CARD19Q96LW7 228 aa7.22□□□□□ -1.25
USP4-204ENST00000416417 CDC42SE2Q9NRR3 84 aa7.22□□□□□ -1.25
USP4-204ENST00000416417 POLR2KP53803 58 aaKnown RBP7.21□□□□□ -1.26
USP4-204ENST00000416417 BLOC1S1P78537 153 aa7.21□□□□□ -1.26
USP4-204ENST00000416417 SS18Q15532 418 aa7.21□□□□□ -1.26
USP4-204ENST00000416417 LINC01551Q86U37 167 aa7.21□□□□□ -1.26
USP4-204ENST00000416417 SMIM7Q9BQ49 75 aa7.21□□□□□ -1.26
USP4-204ENST00000416417 A0A1B0GUT8 65 aa7.2□□□□□ -1.26
USP4-204ENST00000416417 ZNF664Q8N3J9 261 aa7.2□□□□□ -1.26
USP4-204ENST00000416417 TSKUQ8WUA8 353 aa7.2□□□□□ -1.26
USP4-204ENST00000416417 LINC01600Q96MT4 127 aa7.2□□□□□ -1.26
USP4-204ENST00000416417 EIF5A2Q9GZV4 153 aaKnown RBP7.2□□□□□ -1.26
USP4-204ENST00000416417 TMEM191AQ9H0A3 160 aa7.2□□□□□ -1.26
USP4-204ENST00000416417 IGLV4-69A0A075B6H9 119 aa7.19□□□□□ -1.26
USP4-204ENST00000416417 C7orf77A4D0Y5 90 aa7.19□□□□□ -1.26
USP4-204ENST00000416417 ZNF561-AS1K7EIQ3 104 aa7.19□□□□□ -1.26
USP4-204ENST00000416417 SYCNQ0VAF6 134 aa7.19□□□□□ -1.26
USP4-204ENST00000416417 GAGE2BQ13066 116 aa7.19□□□□□ -1.26
USP4-204ENST00000416417 CT83Q5H943 113 aa7.19□□□□□ -1.26
USP4-204ENST00000416417 CD164L2Q6UWJ8 174 aa7.19□□□□□ -1.26
USP4-204ENST00000416417 MRPL52Q86TS9 123 aaKnown RBP7.19□□□□□ -1.26
USP4-204ENST00000416417 AKAP14Q86UN6 197 aa7.19□□□□□ -1.26
USP4-204ENST00000416417 LRP2P98164 4655 aa7.18□□□□□ -1.26
USP4-204ENST00000416417 TRBV27A0A0K0K1C4 114 aa7.18□□□□□ -1.26
USP4-204ENST00000416417 ZNF727A8MUV8 499 aa7.18□□□□□ -1.26
USP4-204ENST00000416417 CAMPP49913 170 aa7.18□□□□□ -1.26
USP4-204ENST00000416417 TRAV13-1A0A0B4J241 112 aa7.17□□□□□ -1.26
USP4-204ENST00000416417 A0A1W2PNN7 141 aa7.17□□□□□ -1.26
USP4-204ENST00000416417 SRP19P09132 144 aaKnown RBP7.17□□□□□ -1.26
USP4-204ENST00000416417 FCER1GP30273 86 aa7.17□□□□□ -1.26
USP4-204ENST00000416417 V9GYV3 84 aa7.17□□□□□ -1.26
USP4-204ENST00000416417 RNF213Q63HN8 5207 aa7.17□□□□□ -1.26
USP4-204ENST00000416417 A0A0J9YXV3 536 aa7.17□□□□□ -1.26
USP4-204ENST00000416417 MALP21145 153 aa7.17□□□□□ -1.26
USP4-204ENST00000416417 PTTG1IPP53801 180 aa7.17□□□□□ -1.26
USP4-204ENST00000416417 Q6ZUT4 128 aa7.17□□□□□ -1.26
USP4-204ENST00000416417 C5orf38Q86SI9 138 aa7.17□□□□□ -1.26
USP4-204ENST00000416417 NRACQ8N912 160 aa7.17□□□□□ -1.26
USP4-204ENST00000416417 NUP35Q8NFH5 326 aa7.17□□□□□ -1.26
USP4-204ENST00000416417 OSTCQ9NRP0 149 aa7.17□□□□□ -1.26
USP4-204ENST00000416417 LINC00474Q9P2X8 69 aa7.17□□□□□ -1.26
USP4-204ENST00000416417 UBE2D4Q9Y2X8 147 aa7.17□□□□□ -1.26
USP4-204ENST00000416417 COX7A2LO14548 114 aa7.16□□□□□ -1.26
USP4-204ENST00000416417 VCYO14598 125 aa7.16□□□□□ -1.26
USP4-204ENST00000416417 SRSF9Q13242 221 aaKnown RBP eCLIP7.16□□□□□ -1.26
USP4-204ENST00000416417 OPRPNQ99935 248 aaPredicted RBP7.16□□□□□ -1.26
USP4-204ENST00000416417 KRTAP10-8P60410 259 aa7.15□□□□□ -1.27
USP4-204ENST00000416417 RIGQ13278 110 aa7.15□□□□□ -1.27
USP4-204ENST00000416417 MRPL51Q4U2R6 128 aaKnown RBP7.15□□□□□ -1.27
USP4-204ENST00000416417 SPINK6Q6UWN8 80 aa7.15□□□□□ -1.27
USP4-204ENST00000416417 Q6ZRP5 223 aa7.15□□□□□ -1.27
USP4-204ENST00000416417 CAMK2N2Q96S95 79 aa7.15□□□□□ -1.27
USP4-204ENST00000416417 LOC107984640A0A0U1RRK4 108 aa7.14□□□□□ -1.27
USP4-204ENST00000416417 C1orf196B1AJZ1 125 aa7.14□□□□□ -1.27
USP4-204ENST00000416417 C9JQL5 133 aa7.14□□□□□ -1.27
USP4-204ENST00000416417 SUMO2P61956 95 aaKnown RBP7.14□□□□□ -1.27
USP4-204ENST00000416417 ISOC2Q96AB3 205 aa7.14□□□□□ -1.27
USP4-204ENST00000416417 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP7.13□□□□□ -1.27
USP4-204ENST00000416417 RPL23P62829 140 aaKnown RBP7.13□□□□□ -1.27
USP4-204ENST00000416417 RPL39P62891 51 aaKnown RBP7.13□□□□□ -1.27
USP4-204ENST00000416417 RPL18AQ02543 176 aaKnown RBP7.13□□□□□ -1.27
USP4-204ENST00000416417 REG3GQ6UW15 175 aa7.13□□□□□ -1.27
USP4-204ENST00000416417 ADIRFQ15847 76 aa7.12□□□□□ -1.27
USP4-204ENST00000416417 TMEM241Q24JQ0 296 aa7.12□□□□□ -1.27
USP4-204ENST00000416417 C9orf116Q5BN46 136 aaPredicted RBP7.12□□□□□ -1.27
USP4-204ENST00000416417 FAM104BQ5XKR9 115 aa7.12□□□□□ -1.27
USP4-204ENST00000416417 PHF5AQ7RTV0 110 aaKnown RBP7.12□□□□□ -1.27
USP4-204ENST00000416417 KIR2DL4Q99706 377 aa7.12□□□□□ -1.27
USP4-204ENST00000416417 APOMO95445 188 aa7.11□□□□□ -1.27
USP4-204ENST00000416417 SRSF3P84103 164 aaKnown RBP7.11□□□□□ -1.27
USP4-204ENST00000416417 SPAG11BQ08648 103 aa7.11□□□□□ -1.27
USP4-204ENST00000416417 FAM104AQ969W3 186 aa7.11□□□□□ -1.27
USP4-204ENST00000416417 NAT8BQ9UHF3 227 aa7.11□□□□□ -1.27
USP4-204ENST00000416417 PSORS1C2Q9UIG4 136 aa7.11□□□□□ -1.27
USP4-204ENST00000416417 PKIGQ9Y2B9 76 aa7.11□□□□□ -1.27
USP4-204ENST00000416417 CSDC2Q9Y534 153 aaKnown RBP7.11□□□□□ -1.27
USP4-204ENST00000416417 TCAPO15273 167 aa7.1□□□□□ -1.27
USP4-204ENST00000416417 MT-ND6P03923 174 aa7.1□□□□□ -1.27
USP4-204ENST00000416417 CKS2P33552 79 aa7.1□□□□□ -1.27
USP4-204ENST00000416417 FAM74A3Q4VXF1 159 aa7.1□□□□□ -1.27
USP4-204ENST00000416417 C10orf25Q5T742 122 aa7.1□□□□□ -1.27
USP4-204ENST00000416417 MRPL54Q6P161 138 aaKnown RBP7.1□□□□□ -1.27
USP4-204ENST00000416417 A0A1B0GVG6 124 aa7.09□□□□□ -1.27
USP4-204ENST00000416417 SMIM27A0A1W2PRY6 76 aa7.09□□□□□ -1.27
USP4-204ENST00000416417 FAM168BA1KXE4 195 aa7.09□□□□□ -1.27
USP4-204ENST00000416417 PPP1R2P9O14990 202 aa7.09□□□□□ -1.27
USP4-204ENST00000416417 TNFRSF6BO95407 300 aa7.09□□□□□ -1.27
USP4-204ENST00000416417 PPP1R17O96001 155 aa7.09□□□□□ -1.27
USP4-204ENST00000416417 C1orf137Q5JT78 98 aa7.09□□□□□ -1.27
USP4-204ENST00000416417 KRTAP11-1Q8IUC1 163 aa7.09□□□□□ -1.27
USP4-204ENST00000416417 ORAOV1Q8WV07 137 aa7.09□□□□□ -1.27
USP4-204ENST00000416417 C2orf48Q96LS8 159 aa7.09□□□□□ -1.27
USP4-204ENST00000416417 D6R8Y8 96 aa7.08□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms