RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 IGHV3-15A0A0B4J1V0 119 aa2.34□□□□□ -2.03
VPS54-204ENST00000416400 DEFB108AA8MXU0 73 aa2.34□□□□□ -2.03
VPS54-204ENST00000416400 J3QQQ9 107 aa2.34□□□□□ -2.03
VPS54-204ENST00000416400 TIMM17BO60830 172 aa2.34□□□□□ -2.03
VPS54-204ENST00000416400 LYZL6O75951 148 aa2.34□□□□□ -2.03
VPS54-204ENST00000416400 IGKV4-1P06312 121 aa2.34□□□□□ -2.03
VPS54-204ENST00000416400 CRIP1P50238 77 aa2.34□□□□□ -2.03
VPS54-204ENST00000416400 HIST1H4AP62805 103 aaKnown RBP2.34□□□□□ -2.03
VPS54-204ENST00000416400 RPL39P5Q59GN2 51 aa2.34□□□□□ -2.03
VPS54-204ENST00000416400 SPANXN1Q5VSR9 72 aa2.34□□□□□ -2.03
VPS54-204ENST00000416400 Q6JHZ5 121 aa2.34□□□□□ -2.03
VPS54-204ENST00000416400 ZNF826PQ6ZT77 177 aa2.34□□□□□ -2.03
VPS54-204ENST00000416400 FAM216BQ8N7L0 139 aa2.34□□□□□ -2.03
VPS54-204ENST00000416400 DCANP1Q8TF63 244 aa2.34□□□□□ -2.03
VPS54-204ENST00000416400 PATE1Q8WXA2 126 aa2.34□□□□□ -2.03
VPS54-204ENST00000416400 SMIM2Q9BVW6 85 aa2.34□□□□□ -2.03
VPS54-204ENST00000416400 TTTY13Q9BZ97 58 aa2.34□□□□□ -2.03
VPS54-204ENST00000416400 TP53TG1Q9Y2A0 90 aa2.34□□□□□ -2.03
VPS54-204ENST00000416400 LINC00588Q9Y4M8 146 aa2.34□□□□□ -2.03
VPS54-204ENST00000416400 LENEPQ9Y5L5 61 aa2.34□□□□□ -2.03
VPS54-204ENST00000416400 HELZP42694 1942 aaKnown RBP2.34□□□□□ -2.04
VPS54-204ENST00000416400 COL4A6Q14031 1691 aa2.34□□□□□ -2.04
VPS54-204ENST00000416400 FANCMQ8IYD8 2048 aa2.34□□□□□ -2.04
VPS54-204ENST00000416400 COL4A2P08572 1712 aa2.34□□□□□ -2.04
VPS54-204ENST00000416400 IGKV1D-37A0A075B6S9 117 aa2.33□□□□□ -2.04
VPS54-204ENST00000416400 FAM236DA0A1B0GTK5 79 aa2.33□□□□□ -2.04
VPS54-204ENST00000416400 A0A1B0GU33 70 aa2.33□□□□□ -2.04
VPS54-204ENST00000416400 H3BRN7 92 aa2.33□□□□□ -2.04
VPS54-204ENST00000416400 LECT2O14960 151 aa2.33□□□□□ -2.04
VPS54-204ENST00000416400 PSCAO43653 123 aa2.33□□□□□ -2.04
VPS54-204ENST00000416400 IGHV1-69P01742 117 aa2.33□□□□□ -2.04
VPS54-204ENST00000416400 SAA1P0DJI8 122 aaPredicted RBP2.33□□□□□ -2.04
VPS54-204ENST00000416400 SAA2P0DJI9 122 aaPredicted RBP2.33□□□□□ -2.04
VPS54-204ENST00000416400 FAM236CP0DP71 79 aa2.33□□□□□ -2.04
VPS54-204ENST00000416400 RPL27AP46776 148 aaKnown RBP2.33□□□□□ -2.04
VPS54-204ENST00000416400 EFNA4P52798 201 aa2.33□□□□□ -2.04
VPS54-204ENST00000416400 ZNF833PQ6ZTB9 187 aa2.33□□□□□ -2.04
VPS54-204ENST00000416400 MUSTN1Q8IVN3 82 aa2.33□□□□□ -2.04
VPS54-204ENST00000416400 LINC00311Q8N616 119 aa2.33□□□□□ -2.04
VPS54-204ENST00000416400 TMEM86BQ8N661 226 aa2.33□□□□□ -2.04
VPS54-204ENST00000416400 Q8NAQ8 132 aa2.33□□□□□ -2.04
VPS54-204ENST00000416400 TIMM21Q9BVV7 248 aa2.33□□□□□ -2.04
VPS54-204ENST00000416400 HIGD2AQ9BW72 106 aa2.33□□□□□ -2.04
VPS54-204ENST00000416400 ATG2BQ96BY7 2078 aa2.33□□□□□ -2.04
VPS54-204ENST00000416400 COL4A5P29400 1685 aa2.32□□□□□ -2.04
VPS54-204ENST00000416400 C5orf67F2Z3F1 127 aa2.32□□□□□ -2.04
VPS54-204ENST00000416400 H0YGX0 51 aa2.32□□□□□ -2.04
VPS54-204ENST00000416400 DNAL4O96015 105 aa2.32□□□□□ -2.04
VPS54-204ENST00000416400 BAALC-AS2P0C853 105 aa2.32□□□□□ -2.04
VPS54-204ENST00000416400 P0C880 135 aa2.32□□□□□ -2.04
VPS54-204ENST00000416400 FXYD7P58549 80 aa2.32□□□□□ -2.04
VPS54-204ENST00000416400 DAD1P61803 113 aa2.32□□□□□ -2.04
VPS54-204ENST00000416400 PMAIP1Q13794 54 aa2.32□□□□□ -2.04
VPS54-204ENST00000416400 RHOHQ15669 191 aa2.32□□□□□ -2.04
VPS54-204ENST00000416400 Q5XG85 94 aa2.32□□□□□ -2.04
VPS54-204ENST00000416400 SFTA2Q6UW10 78 aa2.32□□□□□ -2.04
VPS54-204ENST00000416400 C1orf158Q8N1D5 194 aa2.32□□□□□ -2.04
VPS54-204ENST00000416400 EXOC3-AS1Q8N2X6 119 aa2.32□□□□□ -2.04
VPS54-204ENST00000416400 LY6G5BQ8NDX9 201 aa2.32□□□□□ -2.04
VPS54-204ENST00000416400 FREM3P0C091 2139 aa2.32□□□□□ -2.04
VPS54-204ENST00000416400 ALPK2Q86TB3 2170 aa2.32□□□□□ -2.04
VPS54-204ENST00000416400 SCN10AQ9Y5Y9 1956 aa2.31□□□□□ -2.04
VPS54-204ENST00000416400 C10orf142B7Z368 130 aa2.31□□□□□ -2.04
VPS54-204ENST00000416400 JMJD7-PLA2G4BH0Y9G9 81 aa2.31□□□□□ -2.04
VPS54-204ENST00000416400 H7C2G1 150 aa2.31□□□□□ -2.04
VPS54-204ENST00000416400 COX7A2LO14548 114 aa2.31□□□□□ -2.04
VPS54-204ENST00000416400 ZNF22P17026 224 aaPredicted RBP2.31□□□□□ -2.04
VPS54-204ENST00000416400 S100A4P26447 101 aaKnown RBP2.31□□□□□ -2.04
VPS54-204ENST00000416400 ZNF80P51504 273 aaPredicted RBP2.31□□□□□ -2.04
VPS54-204ENST00000416400 WT1-ASQ06250 92 aa2.31□□□□□ -2.04
VPS54-204ENST00000416400 C3orf56Q8N813 242 aa2.31□□□□□ -2.04
VPS54-204ENST00000416400 MUC7Q8TAX7 377 aa2.31□□□□□ -2.04
VPS54-204ENST00000416400 DYNLRB2Q8TF09 96 aa2.31□□□□□ -2.04
VPS54-204ENST00000416400 UPK3BQ9BT76 320 aa2.31□□□□□ -2.04
VPS54-204ENST00000416400 DOCK3Q8IZD9 2030 aa2.3□□□□□ -2.04
VPS54-204ENST00000416400 DOCK11Q5JSL3 2073 aa2.3□□□□□ -2.04
VPS54-204ENST00000416400 TRAV7A0A075B6U4 112 aa2.3□□□□□ -2.04
VPS54-204ENST00000416400 TRAV13-2A0A0B4J235 113 aa2.3□□□□□ -2.04
VPS54-204ENST00000416400 TRAV41A0A0B4J266 112 aa2.3□□□□□ -2.04
VPS54-204ENST00000416400 TRAV21A0A0B4J279 112 aa2.3□□□□□ -2.04
VPS54-204ENST00000416400 TRBV6-5A0A0K0K1A5 114 aa2.3□□□□□ -2.04
VPS54-204ENST00000416400 IGIPA6NJ69 53 aa2.3□□□□□ -2.04
VPS54-204ENST00000416400 LY6LH3BQJ8 138 aa2.3□□□□□ -2.04
VPS54-204ENST00000416400 I3L3M4 83 aa2.3□□□□□ -2.04
VPS54-204ENST00000416400 CCL3P10147 92 aa2.3□□□□□ -2.04
VPS54-204ENST00000416400 BSPH1Q075Z2 132 aa2.3□□□□□ -2.04
VPS54-204ENST00000416400 MIAQ16674 131 aa2.3□□□□□ -2.04
VPS54-204ENST00000416400 Q6ZRU5 148 aa2.3□□□□□ -2.04
VPS54-204ENST00000416400 DYNAPQ8N1N2 210 aa2.3□□□□□ -2.04
VPS54-204ENST00000416400 C10orf105Q8TEF2 133 aa2.3□□□□□ -2.04
VPS54-204ENST00000416400 PROK2Q9HC23 129 aa2.3□□□□□ -2.04
VPS54-204ENST00000416400 PKIGQ9Y2B9 76 aa2.3□□□□□ -2.04
VPS54-204ENST00000416400 CPAMD8Q8IZJ3 1885 aa2.3□□□□□ -2.04
VPS54-204ENST00000416400 ANAPC1Q9H1A4 1944 aa2.3□□□□□ -2.04
VPS54-204ENST00000416400 OBSL1O75147 1896 aa2.29□□□□□ -2.04
VPS54-204ENST00000416400 IGHV1-58A0A0C4DH39 117 aa2.29□□□□□ -2.04
VPS54-204ENST00000416400 I3L2K1 104 aa2.29□□□□□ -2.04
VPS54-204ENST00000416400 NDUFB3O43676 98 aa2.29□□□□□ -2.04
VPS54-204ENST00000416400 IGKV1-16P04430 117 aa2.29□□□□□ -2.04
VPS54-204ENST00000416400 PDE6GP18545 87 aa2.29□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 72.7 ms