RNA–Protein interactions for RNA: ENST00000413409.6

PTPRC-206, Transcript of protein tyrosine phosphatase, receptor type C, humanhuman

TSL 1 (best) BASIC

Gene PTPRC, Length 1,338 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRC-206ENST00000413409 COTL1Q14019 142 aa12.11□□□□□ -0.47
PTPRC-206ENST00000413409 NFE4Q86UQ8 179 aa12.11□□□□□ -0.47
PTPRC-206ENST00000413409 OR11H2Q8NH07 326 aa12.11□□□□□ -0.47
PTPRC-206ENST00000413409 NOP10Q9NPE3 64 aaKnown RBP12.11□□□□□ -0.47
PTPRC-206ENST00000413409 C11orf86A6NJI1 115 aa12.11□□□□□ -0.47
PTPRC-206ENST00000413409 HERVK_113P61574 105 aa12.11□□□□□ -0.47
PTPRC-206ENST00000413409 ZNF479Q96JC4 524 aa12.11□□□□□ -0.47
PTPRC-206ENST00000413409 CHCHD7Q9BUK0 85 aa12.11□□□□□ -0.47
PTPRC-206ENST00000413409 RPL36AP83881 106 aaKnown RBP12.1□□□□□ -0.47
PTPRC-206ENST00000413409 DEFB104AQ8WTQ1 72 aa12.1□□□□□ -0.47
PTPRC-206ENST00000413409 RPL36ALQ969Q0 106 aaKnown RBP12.1□□□□□ -0.47
PTPRC-206ENST00000413409 FAT2Q9NYQ8 4349 aa12.09□□□□□ -0.47
PTPRC-206ENST00000413409 TRBV7-3A0A075B6L6 115 aa12.09□□□□□ -0.47
PTPRC-206ENST00000413409 SMIM9A6NGZ8 99 aa12.09□□□□□ -0.47
PTPRC-206ENST00000413409 AMELXQ99217 191 aa12.09□□□□□ -0.47
PTPRC-206ENST00000413409 HERC1Q15751 4861 aa12.09□□□□□ -0.47
PTPRC-206ENST00000413409 DNAH2Q9P225 4427 aa12.08□□□□□ -0.48
PTPRC-206ENST00000413409 TRBV25-1A0A075B6N4 114 aa12.08□□□□□ -0.48
PTPRC-206ENST00000413409 DAZ4Q86SG3 579 aaKnown RBP12.08□□□□□ -0.48
PTPRC-206ENST00000413409 KIR2DL5BQ8NHK3 375 aa12.08□□□□□ -0.48
PTPRC-206ENST00000413409 PRADC1Q9BSG0 188 aa12.08□□□□□ -0.48
PTPRC-206ENST00000413409 CHAC1Q9BUX1 264 aa12.08□□□□□ -0.48
PTPRC-206ENST00000413409 TIMM21Q9BVV7 248 aa12.08□□□□□ -0.48
PTPRC-206ENST00000413409 DAZ3Q9NR90 486 aaKnown RBP12.08□□□□□ -0.48
PTPRC-206ENST00000413409 Q9UF83 564 aa12.08□□□□□ -0.48
PTPRC-206ENST00000413409 DNAH11Q96DT5 4516 aa12.07□□□□□ -0.48
PTPRC-206ENST00000413409 DNAH6Q9C0G6 4158 aa12.07□□□□□ -0.48
PTPRC-206ENST00000413409 LINC00612Q8N6U2 182 aa12.07□□□□□ -0.48
PTPRC-206ENST00000413409 ORAOV1Q8WV07 137 aa12.07□□□□□ -0.48
PTPRC-206ENST00000413409 VCX2Q9H322 139 aa12.07□□□□□ -0.48
PTPRC-206ENST00000413409 DNAH17Q9UFH2 4485 aa12.06□□□□□ -0.48
PTPRC-206ENST00000413409 TRGV2A0A075B6R0 118 aa12.06□□□□□ -0.48
PTPRC-206ENST00000413409 TRAV8-6A0A0B4J262 113 aa12.06□□□□□ -0.48
PTPRC-206ENST00000413409 MYMXA0A1B0GTQ4 84 aa12.06□□□□□ -0.48
PTPRC-206ENST00000413409 TRBV6-4A0A1B0GX49 114 aa12.06□□□□□ -0.48
PTPRC-206ENST00000413409 GAGE12BA1L429 117 aa12.06□□□□□ -0.48
PTPRC-206ENST00000413409 GAGE7O76087 117 aa12.06□□□□□ -0.48
PTPRC-206ENST00000413409 GAGE12FP0CL80 117 aa12.06□□□□□ -0.48
PTPRC-206ENST00000413409 GAGE12GP0CL81 117 aa12.06□□□□□ -0.48
PTPRC-206ENST00000413409 GAGE12IP0CL82 117 aa12.06□□□□□ -0.48
PTPRC-206ENST00000413409 UBE2D3P61077 147 aa12.06□□□□□ -0.48
PTPRC-206ENST00000413409 UBE2D2P62837 147 aa12.06□□□□□ -0.48
PTPRC-206ENST00000413409 TAL2Q16559 108 aa12.06□□□□□ -0.48
PTPRC-206ENST00000413409 ZNRF2Q8NHG8 242 aa12.06□□□□□ -0.48
PTPRC-206ENST00000413409 TTTY13Q9BZ97 58 aa12.06□□□□□ -0.48
PTPRC-206ENST00000413409 UBE2D4Q9Y2X8 147 aa12.06□□□□□ -0.48
PTPRC-206ENST00000413409 COX11Q9Y6N1 276 aa12.06□□□□□ -0.48
PTPRC-206ENST00000413409 A6NDN8 102 aa12.05□□□□□ -0.48
PTPRC-206ENST00000413409 APOC4P55056 127 aa12.05□□□□□ -0.48
PTPRC-206ENST00000413409 MRPS36P82909 103 aaKnown RBP12.05□□□□□ -0.48
PTPRC-206ENST00000413409 GAGE1Q13065 139 aa12.05□□□□□ -0.48
PTPRC-206ENST00000413409 MAPKAPK5-AS1Q8N8E1 139 aa12.05□□□□□ -0.48
PTPRC-206ENST00000413409 SLC25A29Q8N8R3 303 aa12.05□□□□□ -0.48
PTPRC-206ENST00000413409 PHLDA1Q8WV24 401 aaPredicted RBP12.05□□□□□ -0.48
PTPRC-206ENST00000413409 SMAGPQ0VAQ4 97 aa12.04□□□□□ -0.48
PTPRC-206ENST00000413409 FAM104AQ969W3 186 aa12.04□□□□□ -0.48
PTPRC-206ENST00000413409 OPRPNQ99935 248 aaPredicted RBP12.04□□□□□ -0.48
PTPRC-206ENST00000413409 X6R8D5 127 aa12.04□□□□□ -0.48
PTPRC-206ENST00000413409 IGHV3-38A0A0C4DH36 116 aa12.03□□□□□ -0.48
PTPRC-206ENST00000413409 TAX1BP3O14907 124 aa12.03□□□□□ -0.48
PTPRC-206ENST00000413409 ZNF25P17030 456 aaPredicted RBP12.03□□□□□ -0.48
PTPRC-206ENST00000413409 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.02□□□□□ -0.49
PTPRC-206ENST00000413409 IGKV2-29A2NJV5 120 aaPredicted RBP12.02□□□□□ -0.49
PTPRC-206ENST00000413409 EMP1P54849 157 aa12.02□□□□□ -0.49
PTPRC-206ENST00000413409 GTSF1LQ9H1H1 148 aa12.02□□□□□ -0.49
PTPRC-206ENST00000413409 TMEM223A0PJW6 202 aa12.01□□□□□ -0.49
PTPRC-206ENST00000413409 ZNF22P17026 224 aaPredicted RBP12.01□□□□□ -0.49
PTPRC-206ENST00000413409 TMEM170BQ5T4T1 132 aa12.01□□□□□ -0.49
PTPRC-206ENST00000413409 LINC00469Q8N7U9 141 aa12.01□□□□□ -0.49
PTPRC-206ENST00000413409 TRGV4A0A0C4DH28 118 aa12□□□□□ -0.49
PTPRC-206ENST00000413409 ZNF815PA8K554 130 aa12□□□□□ -0.49
PTPRC-206ENST00000413409 LINC00694P0DN24 101 aa12□□□□□ -0.49
PTPRC-206ENST00000413409 Q6ZUT4 128 aa12□□□□□ -0.49
PTPRC-206ENST00000413409 TM2D2Q9BX73 214 aa12□□□□□ -0.49
PTPRC-206ENST00000413409 CSDC2Q9Y534 153 aaKnown RBP12□□□□□ -0.49
PTPRC-206ENST00000413409 A0A0J9YXV3 536 aa11.99□□□□□ -0.49
PTPRC-206ENST00000413409 GAGE12JA6NER3 117 aa11.99□□□□□ -0.49
PTPRC-206ENST00000413409 LYRM9A8MSI8 78 aa11.99□□□□□ -0.49
PTPRC-206ENST00000413409 LEPROTO15243 131 aa11.99□□□□□ -0.49
PTPRC-206ENST00000413409 GAGE4Q13068 117 aa11.99□□□□□ -0.49
PTPRC-206ENST00000413409 GAGE5Q13069 117 aa11.99□□□□□ -0.49
PTPRC-206ENST00000413409 FHL2Q14192 279 aa11.99□□□□□ -0.49
PTPRC-206ENST00000413409 GAGE13Q4V321 117 aa11.99□□□□□ -0.49
PTPRC-206ENST00000413409 CEMP1Q6PRD7 247 aaPredicted RBP11.99□□□□□ -0.49
PTPRC-206ENST00000413409 TINCRA0A1B0GVN0 87 aa11.98□□□□□ -0.49
PTPRC-206ENST00000413409 H3BRM9 83 aa11.98□□□□□ -0.49
PTPRC-206ENST00000413409 CEND1Q8N111 149 aa11.98□□□□□ -0.49
PTPRC-206ENST00000413409 PLEKHB2Q96CS7 222 aa11.98□□□□□ -0.49
PTPRC-206ENST00000413409 NUPR2A6NF83 97 aa11.97□□□□□ -0.49
PTPRC-206ENST00000413409 H7C423 109 aa11.97□□□□□ -0.49
PTPRC-206ENST00000413409 GCSHP23434 173 aa11.97□□□□□ -0.49
PTPRC-206ENST00000413409 HSPG2P98160 4391 aa11.97□□□□□ -0.49
PTPRC-206ENST00000413409 PKD1P98161 4303 aa11.97□□□□□ -0.49
PTPRC-206ENST00000413409 J3QQQ9 107 aa11.96□□□□□ -0.49
PTPRC-206ENST00000413409 TSPEAR-AS2P59090 65 aa11.96□□□□□ -0.49
PTPRC-206ENST00000413409 NTM-AS1Q6ZSK4 140 aa11.96□□□□□ -0.49
PTPRC-206ENST00000413409 TMEM243Q9BU79 118 aa11.96□□□□□ -0.49
PTPRC-206ENST00000413409 A0A1B0GVY2 172 aa11.95□□□□□ -0.5
PTPRC-206ENST00000413409 LGALS3P17931 250 aaKnown RBP11.95□□□□□ -0.5
PTPRC-206ENST00000413409 UBE2D1P51668 147 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms