RNA–Protein interactions for RNA: ENST00000404008.6

USP42-202, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 2

Gene USP42, Length 1,380 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-202ENST00000404008 URB1-AS1Q96HZ7 61 aa19.6■□□□□ 0.73
USP42-202ENST00000404008 SPANXA1Q9NS26 97 aa19.6■□□□□ 0.73
USP42-202ENST00000404008 CYSLTR1Q9Y271 337 aa19.6■□□□□ 0.73
USP42-202ENST00000404008 C2orf66Q6UXQ4 117 aa19.59■□□□□ 0.73
USP42-202ENST00000404008 LINC00336Q6ZUF6 198 aa19.59■□□□□ 0.73
USP42-202ENST00000404008 ZNF664Q8N3J9 261 aa19.59■□□□□ 0.73
USP42-202ENST00000404008 RMI2Q96E14 147 aa19.58■□□□□ 0.73
USP42-202ENST00000404008 LINC00614P0C842 121 aa19.57■□□□□ 0.72
USP42-202ENST00000404008 TM2D2Q9BX73 214 aa19.57■□□□□ 0.72
USP42-202ENST00000404008 AP5S1Q9NUS5 200 aa19.57■□□□□ 0.72
USP42-202ENST00000404008 IGKV2D-24A0A075B6R9 120 aa19.57■□□□□ 0.72
USP42-202ENST00000404008 G0S2P27469 103 aa19.57■□□□□ 0.72
USP42-202ENST00000404008 PYGO1Q9Y3Y4 419 aa19.57■□□□□ 0.72
USP42-202ENST00000404008 RAB5BP61020 215 aa19.56■□□□□ 0.72
USP42-202ENST00000404008 Q6ZUT4 128 aa19.56■□□□□ 0.72
USP42-202ENST00000404008 FAM104AQ969W3 186 aa19.56■□□□□ 0.72
USP42-202ENST00000404008 C1orf43Q9BWL3 253 aa19.56■□□□□ 0.72
USP42-202ENST00000404008 COX11Q9Y6N1 276 aa19.56■□□□□ 0.72
USP42-202ENST00000404008 PRSS29PA6NIE9 313 aa19.55■□□□□ 0.72
USP42-202ENST00000404008 PSCAO43653 123 aa19.54■□□□□ 0.72
USP42-202ENST00000404008 MRPS36P82909 103 aaKnown RBP19.54■□□□□ 0.72
USP42-202ENST00000404008 TNP2Q05952 138 aa19.54■□□□□ 0.72
USP42-202ENST00000404008 TOMM6Q96B49 74 aa19.54■□□□□ 0.72
USP42-202ENST00000404008 TRAV8-4A0A0B4J246 113 aa19.53■□□□□ 0.72
USP42-202ENST00000404008 IGKV3OR2-268A0A0C4DH90 116 aa19.53■□□□□ 0.72
USP42-202ENST00000404008 OPRPNQ99935 248 aaPredicted RBP19.53■□□□□ 0.72
USP42-202ENST00000404008 RNASE13Q5GAN3 156 aaKnown RBP19.52■□□□□ 0.72
USP42-202ENST00000404008 IGLV10-54A0A075B6I4 117 aa19.51■□□□□ 0.71
USP42-202ENST00000404008 PKD1P98161 4303 aa19.51■□□□□ 0.71
USP42-202ENST00000404008 IGIPA6NJ69 53 aa19.5■□□□□ 0.71
USP42-202ENST00000404008 IGLV4-3A0A075B6K6 122 aa19.49■□□□□ 0.71
USP42-202ENST00000404008 KRTAP26-1Q6PEX3 210 aa19.49■□□□□ 0.71
USP42-202ENST00000404008 BAGE3Q86Y29 109 aa19.49■□□□□ 0.71
USP42-202ENST00000404008 MAPKAPK5-AS1Q8N8E1 139 aa19.49■□□□□ 0.71
USP42-202ENST00000404008 CHCHD1Q96BP2 118 aaKnown RBP19.49■□□□□ 0.71
USP42-202ENST00000404008 HECTD4Q9Y4D8 3996 aa19.49■□□□□ 0.71
USP42-202ENST00000404008 A0A096LNJ9 63 aa19.47■□□□□ 0.71
USP42-202ENST00000404008 LINC00959A0A1B0GUT2 108 aa19.47■□□□□ 0.71
USP42-202ENST00000404008 LINC01549A6NIU2 74 aa19.47■□□□□ 0.71
USP42-202ENST00000404008 NPSP0C0P6 89 aa19.47■□□□□ 0.71
USP42-202ENST00000404008 TMEM141Q96I45 108 aa19.46■□□□□ 0.71
USP42-202ENST00000404008 TIMM17AQ99595 171 aa19.46■□□□□ 0.71
USP42-202ENST00000404008 PMCHL1Q16048 86 aa19.45■□□□□ 0.7
USP42-202ENST00000404008 ERASQ7Z444 233 aa19.45■□□□□ 0.7
USP42-202ENST00000404008 LRCOL1A6NCL2 159 aa19.44■□□□□ 0.7
USP42-202ENST00000404008 CHCHD10Q8WYQ3 142 aaPredicted RBP19.44■□□□□ 0.7
USP42-202ENST00000404008 SCGB3A1Q96QR1 104 aa19.44■□□□□ 0.7
USP42-202ENST00000404008 A0A087WTM6 91 aa19.44■□□□□ 0.7
USP42-202ENST00000404008 HIST1H2BKO60814 126 aa19.44■□□□□ 0.7
USP42-202ENST00000404008 HBDP02042 147 aa19.44■□□□□ 0.7
USP42-202ENST00000404008 HIST1H2BJP06899 126 aa19.44■□□□□ 0.7
USP42-202ENST00000404008 HIST1H2BOP23527 126 aa19.44■□□□□ 0.7
USP42-202ENST00000404008 HIST1H2BBP33778 126 aa19.44■□□□□ 0.7
USP42-202ENST00000404008 HIST1H2BDP58876 126 aa19.44■□□□□ 0.7
USP42-202ENST00000404008 HIST1H2BCP62807 126 aa19.44■□□□□ 0.7
USP42-202ENST00000404008 HIST2H2BEQ16778 126 aa19.44■□□□□ 0.7
USP42-202ENST00000404008 HIST2H2BFQ5QNW6 126 aaPredicted RBP19.44■□□□□ 0.7
USP42-202ENST00000404008 HIST1H2BHQ93079 126 aa19.44■□□□□ 0.7
USP42-202ENST00000404008 HIST1H2BNQ99877 126 aa19.44■□□□□ 0.7
USP42-202ENST00000404008 HIST1H2BMQ99879 126 aa19.44■□□□□ 0.7
USP42-202ENST00000404008 SS18Q15532 418 aa19.43■□□□□ 0.7
USP42-202ENST00000404008 DNAH11Q96DT5 4516 aa19.42■□□□□ 0.7
USP42-202ENST00000404008 TRAV13-1A0A0B4J241 112 aa19.42■□□□□ 0.7
USP42-202ENST00000404008 LINC00310P59036 64 aa19.42■□□□□ 0.7
USP42-202ENST00000404008 Q6ZN92 141 aa19.42■□□□□ 0.7
USP42-202ENST00000404008 A0A1B0GVY2 172 aa19.41■□□□□ 0.7
USP42-202ENST00000404008 CCL25O15444 150 aa19.41■□□□□ 0.7
USP42-202ENST00000404008 BAALCQ8WXS3 180 aa19.41■□□□□ 0.7
USP42-202ENST00000404008 GAGE12HA6NDE8 117 aa19.4■□□□□ 0.7
USP42-202ENST00000404008 IFITM10A6NMD0 228 aa19.4■□□□□ 0.7
USP42-202ENST00000404008 C1orf196B1AJZ1 125 aa19.4■□□□□ 0.7
USP42-202ENST00000404008 SERF1AO75920 110 aa19.4■□□□□ 0.7
USP42-202ENST00000404008 TEX43Q6ZNM6 134 aa19.4■□□□□ 0.7
USP42-202ENST00000404008 LINC00173Q6ZV60 143 aa19.4■□□□□ 0.7
USP42-202ENST00000404008 AMELXQ99217 191 aa19.4■□□□□ 0.7
USP42-202ENST00000404008 XCL1P47992 114 aa19.39■□□□□ 0.69
USP42-202ENST00000404008 WFDC2Q14508 124 aa19.39■□□□□ 0.69
USP42-202ENST00000404008 PDZD11Q5EBL8 140 aa19.39■□□□□ 0.69
USP42-202ENST00000404008 PAPPA-AS1Q5QFB9 102 aa19.39■□□□□ 0.69
USP42-202ENST00000404008 VCX2Q9H322 139 aa19.39■□□□□ 0.69
USP42-202ENST00000404008 HSBP1O75506 76 aa19.38■□□□□ 0.69
USP42-202ENST00000404008 LECT2O14960 151 aa19.37■□□□□ 0.69
USP42-202ENST00000404008 ZC2HC1BQ5TFG8 222 aa19.37■□□□□ 0.69
USP42-202ENST00000404008 FOXI1Q12951 378 aa19.36■□□□□ 0.69
USP42-202ENST00000404008 C2orf88Q9BSF0 95 aa19.36■□□□□ 0.69
USP42-202ENST00000404008 EREGO14944 169 aa19.35■□□□□ 0.69
USP42-202ENST00000404008 CD164L2Q6UWJ8 174 aa19.35■□□□□ 0.69
USP42-202ENST00000404008 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP19.34■□□□□ 0.69
USP42-202ENST00000404008 NUPR1O60356 82 aa19.34■□□□□ 0.69
USP42-202ENST00000404008 FAM19A2Q8N3H0 131 aa19.34■□□□□ 0.69
USP42-202ENST00000404008 UBE2D1P51668 147 aa19.32■□□□□ 0.68
USP42-202ENST00000404008 Q8N814 137 aa19.32■□□□□ 0.68
USP42-202ENST00000404008 PKHD1P08F94 4074 aa19.31■□□□□ 0.68
USP42-202ENST00000404008 USP17L23D6RBM5 183 aa19.31■□□□□ 0.68
USP42-202ENST00000404008 ATP5LO75964 103 aa19.31■□□□□ 0.68
USP42-202ENST00000404008 EPPK1P58107 5090 aaKnown RBP19.3■□□□□ 0.68
USP42-202ENST00000404008 LINC00242Q5T6M2 205 aa19.29■□□□□ 0.68
USP42-202ENST00000404008 PMVKQ15126 192 aa19.28■□□□□ 0.68
USP42-202ENST00000404008 SPATA12Q7Z6I5 190 aa19.28■□□□□ 0.68
USP42-202ENST00000404008 CST9LQ9H4G1 147 aa19.28■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 73.3 ms