RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 IGHV3-53P01767 116 aa15.18■□□□□ 0.02
CTCF-202ENST00000401394 LINC00694P0DN24 101 aa15.18■□□□□ 0.02
CTCF-202ENST00000401394 MIAQ16674 131 aa15.18■□□□□ 0.02
CTCF-202ENST00000401394 CITED2Q99967 270 aaPredicted RBP15.18■□□□□ 0.02
CTCF-202ENST00000401394 TMEM61Q8N0U2 210 aa15.17■□□□□ 0.02
CTCF-202ENST00000401394 TMEM101Q96IK0 257 aa15.17■□□□□ 0.02
CTCF-202ENST00000401394 TRGV11A0A075B6L2 103 aa15.16■□□□□ 0.02
CTCF-202ENST00000401394 KHDC1LQ5JSQ8 128 aa15.16■□□□□ 0.02
CTCF-202ENST00000401394 C11orf44Q8N8P7 122 aa15.15■□□□□ 0.02
CTCF-202ENST00000401394 SVIPQ8NHG7 77 aa15.15■□□□□ 0.02
CTCF-202ENST00000401394 LINC01587Q99440 93 aa15.15■□□□□ 0.02
CTCF-202ENST00000401394 GAGE5Q13069 117 aa15.15■□□□□ 0.02
CTCF-202ENST00000401394 GAGE6Q13070 117 aa15.15■□□□□ 0.02
CTCF-202ENST00000401394 UBE2E2Q96LR5 201 aa15.15■□□□□ 0.02
CTCF-202ENST00000401394 TRAV13-1A0A0B4J241 112 aa15.15■□□□□ 0.02
CTCF-202ENST00000401394 XCL2Q9UBD3 114 aa15.15■□□□□ 0.02
CTCF-202ENST00000401394 PYGO1Q9Y3Y4 419 aa15.15■□□□□ 0.02
CTCF-202ENST00000401394 ZNF462Q96JM2 2506 aa15.14■□□□□ 0.01
CTCF-202ENST00000401394 SOSTDC1Q6X4U4 206 aa15.14■□□□□ 0.01
CTCF-202ENST00000401394 Q9H8V8 135 aa15.14■□□□□ 0.01
CTCF-202ENST00000401394 CHCHD5Q9BSY4 110 aa15.14■□□□□ 0.01
CTCF-202ENST00000401394 NBEAL2Q6ZNJ1 2754 aa15.14■□□□□ 0.01
CTCF-202ENST00000401394 IFITM1P13164 125 aa15.12■□□□□ 0.01
CTCF-202ENST00000401394 TINCRA0A1B0GVN0 87 aa15.12■□□□□ 0.01
CTCF-202ENST00000401394 B4DSR2 109 aa15.12■□□□□ 0.01
CTCF-202ENST00000401394 SPANXDQ9BXN6 97 aa15.11■□□□□ 0.01
CTCF-202ENST00000401394 SPANXCQ9NY87 97 aa15.11■□□□□ 0.01
CTCF-202ENST00000401394 MTORP42345 2549 aa15.1■□□□□ 0.01
CTCF-202ENST00000401394 LST1O00453 97 aa15.1■□□□□ 0.01
CTCF-202ENST00000401394 DGAT2L7PQ6IED9 249 aa15.1■□□□□ 0.01
CTCF-202ENST00000401394 PIK3CD-AS1Q5SR53 167 aa15.09■□□□□ 0.01
CTCF-202ENST00000401394 C11orf72Q8NBR9 251 aa15.09■□□□□ 0.01
CTCF-202ENST00000401394 COX6CP09669 75 aa15.08■□□□□ 0
CTCF-202ENST00000401394 ZNF702PQ9H963 129 aa15.08■□□□□ 0
CTCF-202ENST00000401394 LINC00242Q5T6M2 205 aa15.07■□□□□ 0
CTCF-202ENST00000401394 LINC00308Q8TCZ7 52 aa15.07■□□□□ 0
CTCF-202ENST00000401394 IGKV3OR2-268A0A0C4DH90 116 aa15.07■□□□□ 0
CTCF-202ENST00000401394 PLA2G2AP14555 144 aa15.07■□□□□ 0
CTCF-202ENST00000401394 ACANP16112 2415 aa15.07■□□□□ 0
CTCF-202ENST00000401394 GAGE12JA6NER3 117 aa15.06■□□□□ 0
CTCF-202ENST00000401394 GAGE7O76087 117 aa15.06■□□□□ 0
CTCF-202ENST00000401394 GAGE12FP0CL80 117 aa15.06■□□□□ 0
CTCF-202ENST00000401394 GAGE12GP0CL81 117 aa15.06■□□□□ 0
CTCF-202ENST00000401394 GAGE12IP0CL82 117 aa15.06■□□□□ 0
CTCF-202ENST00000401394 GAGE4Q13068 117 aa15.06■□□□□ 0
CTCF-202ENST00000401394 M0QXV9 152 aa15.05■□□□□ 0
CTCF-202ENST00000401394 FAM218AQ96MZ4 157 aa15.05■□□□□ 0
CTCF-202ENST00000401394 TRGV1A0A0A0MS02 117 aa15.04■□□□□ -0
CTCF-202ENST00000401394 TMEM89A2RUT3 159 aa15.04■□□□□ -0
CTCF-202ENST00000401394 SMCR5Q8TEV8 140 aa15.04■□□□□ -0
CTCF-202ENST00000401394 MAP6D1Q9H9H5 199 aa15.04■□□□□ -0
CTCF-202ENST00000401394 NTM-AS1Q6ZSK4 140 aa15.04■□□□□ -0
CTCF-202ENST00000401394 Q9HAA7 133 aa15.04■□□□□ -0
CTCF-202ENST00000401394 SPANXA1Q9NS26 97 aa15.04■□□□□ -0
CTCF-202ENST00000401394 ZNF415Q09FC8 603 aa15.03■□□□□ -0
CTCF-202ENST00000401394 A0A1W2PRX2 142 aa15.02■□□□□ -0
CTCF-202ENST00000401394 MEIG1Q5JSS6 88 aa15.02■□□□□ -0
CTCF-202ENST00000401394 Q96MF0 132 aa15.02■□□□□ -0
CTCF-202ENST00000401394 RS1O15537 224 aa15.01□□□□□ -0.01
CTCF-202ENST00000401394 Q6ZTI0 123 aa15.01□□□□□ -0.01
CTCF-202ENST00000401394 NDUFA1O15239 70 aa15.01□□□□□ -0.01
CTCF-202ENST00000401394 SMIM20Q8N5G0 67 aa15.01□□□□□ -0.01
CTCF-202ENST00000401394 LOC100131303A0A0U1RQF7 123 aa15□□□□□ -0.01
CTCF-202ENST00000401394 PRIMA1Q86XR5 153 aa15□□□□□ -0.01
CTCF-202ENST00000401394 VPREB3Q9UKI3 123 aa15□□□□□ -0.01
CTCF-202ENST00000401394 SMIM1B2RUZ4 78 aa15□□□□□ -0.01
CTCF-202ENST00000401394 H3BT86 120 aa15□□□□□ -0.01
CTCF-202ENST00000401394 GCN1Q92616 2671 aaKnown RBP15□□□□□ -0.01
CTCF-202ENST00000401394 DAZ2Q13117 558 aaKnown RBP14.97□□□□□ -0.01
CTCF-202ENST00000401394 C9orf129Q5T035 196 aaKnown RBP14.97□□□□□ -0.01
CTCF-202ENST00000401394 DAZ4Q86SG3 579 aaKnown RBP14.97□□□□□ -0.01
CTCF-202ENST00000401394 DAZ3Q9NR90 486 aaKnown RBP14.97□□□□□ -0.01
CTCF-202ENST00000401394 WFDC10AQ9H1F0 79 aa14.97□□□□□ -0.01
CTCF-202ENST00000401394 C22orf24Q9Y442 160 aa14.97□□□□□ -0.01
CTCF-202ENST00000401394 DYNLRB2Q8TF09 96 aa14.97□□□□□ -0.01
CTCF-202ENST00000401394 C1orf158Q8N1D5 194 aa14.96□□□□□ -0.01
CTCF-202ENST00000401394 LINC01356Q8N9X3 169 aa14.96□□□□□ -0.01
CTCF-202ENST00000401394 YAE1D1Q9NRH1 226 aa14.96□□□□□ -0.02
CTCF-202ENST00000401394 TOMM7Q9P0U1 55 aa14.96□□□□□ -0.02
CTCF-202ENST00000401394 FAM236AA0A1B0GUQ0 79 aa14.95□□□□□ -0.02
CTCF-202ENST00000401394 FAM236BA0A1B0GV22 79 aa14.95□□□□□ -0.02
CTCF-202ENST00000401394 EDA2RQ9HAV5 297 aa14.95□□□□□ -0.02
CTCF-202ENST00000401394 KRTAP10-9P60411 292 aa14.95□□□□□ -0.02
CTCF-202ENST00000401394 ITPR3Q14573 2671 aa14.94□□□□□ -0.02
CTCF-202ENST00000401394 CIRBPQ14011 172 aaKnown RBP14.94□□□□□ -0.02
CTCF-202ENST00000401394 ODF3L2Q3SX64 289 aa14.94□□□□□ -0.02
CTCF-202ENST00000401394 LINC01600Q96MT4 127 aa14.94□□□□□ -0.02
CTCF-202ENST00000401394 IGLV5-45A0A087WSX0 123 aa14.94□□□□□ -0.02
CTCF-202ENST00000401394 IGLV5-39A0A0G2JS06 123 aa14.94□□□□□ -0.02
CTCF-202ENST00000401394 TIRAPP58753 221 aa14.93□□□□□ -0.02
CTCF-202ENST00000401394 RNF152Q8N8N0 203 aa14.93□□□□□ -0.02
CTCF-202ENST00000401394 FLNAP21333 2647 aaKnown RBP14.93□□□□□ -0.02
CTCF-202ENST00000401394 APCP25054 2843 aa14.92□□□□□ -0.02
CTCF-202ENST00000401394 A0A096LNT2 108 aa14.92□□□□□ -0.02
CTCF-202ENST00000401394 COX7A2LO14548 114 aa14.92□□□□□ -0.02
CTCF-202ENST00000401394 BAALC-AS2P0C853 105 aa14.92□□□□□ -0.02
CTCF-202ENST00000401394 DEFB114Q30KQ6 69 aa14.92□□□□□ -0.02
CTCF-202ENST00000401394 PRB1P04280 392 aa14.92□□□□□ -0.02
CTCF-202ENST00000401394 INSP01308 110 aa14.91□□□□□ -0.02
CTCF-202ENST00000401394 Q6YL49 198 aa14.91□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms