RNA–Protein interactions for RNA: ENST00000397901.7

CHMP1A-201, Transcript of charged multivesicular body protein 1A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP1A, Length 2,483 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-201ENST00000397901 Q6ZSV7 163 aa11.68□□□□□ -0.54
CHMP1A-201ENST00000397901 RNASE13Q5GAN3 156 aaKnown RBP11.67□□□□□ -0.54
CHMP1A-201ENST00000397901 PEMTQ9UBM1 199 aa11.67□□□□□ -0.54
CHMP1A-201ENST00000397901 B4DSR2 109 aa11.67□□□□□ -0.54
CHMP1A-201ENST00000397901 ATOX1O00244 68 aa11.67□□□□□ -0.54
CHMP1A-201ENST00000397901 PROK1P58294 105 aa11.67□□□□□ -0.54
CHMP1A-201ENST00000397901 BBC3Q96PG8 261 aaPredicted RBP11.67□□□□□ -0.54
CHMP1A-201ENST00000397901 FBN2P35556 2912 aa11.67□□□□□ -0.54
CHMP1A-201ENST00000397901 UBR5O95071 2799 aaPredicted RBP11.67□□□□□ -0.54
CHMP1A-201ENST00000397901 CD28P10747 220 aa11.66□□□□□ -0.54
CHMP1A-201ENST00000397901 DSCR9P59020 149 aa11.66□□□□□ -0.54
CHMP1A-201ENST00000397901 TRACP01848 142 aa11.66□□□□□ -0.54
CHMP1A-201ENST00000397901 ZNF462Q96JM2 2506 aa11.66□□□□□ -0.54
CHMP1A-201ENST00000397901 PRM2P04554 102 aa11.65□□□□□ -0.54
CHMP1A-201ENST00000397901 RBMY1A1P0DJD3 496 aaKnown RBP11.65□□□□□ -0.54
CHMP1A-201ENST00000397901 RBMY1CP0DJD4 496 aa11.65□□□□□ -0.54
CHMP1A-201ENST00000397901 HIST1H4AP62805 103 aaKnown RBP11.65□□□□□ -0.54
CHMP1A-201ENST00000397901 RBMY1FQ15415 496 aaKnown RBP11.65□□□□□ -0.54
CHMP1A-201ENST00000397901 NDUFA12Q9UI09 145 aa11.65□□□□□ -0.54
CHMP1A-201ENST00000397901 DEFB112Q30KQ8 113 aa11.64□□□□□ -0.55
CHMP1A-201ENST00000397901 hADV29S1A0JD25 119 aa11.64□□□□□ -0.55
CHMP1A-201ENST00000397901 KNCNA6PVL3 124 aa11.64□□□□□ -0.55
CHMP1A-201ENST00000397901 A0A096LNT2 108 aa11.63□□□□□ -0.55
CHMP1A-201ENST00000397901 NPC2P61916 151 aa11.63□□□□□ -0.55
CHMP1A-201ENST00000397901 CITED2Q99967 270 aaPredicted RBP11.63□□□□□ -0.55
CHMP1A-201ENST00000397901 IGHV1-58A0A0C4DH39 117 aa11.63□□□□□ -0.55
CHMP1A-201ENST00000397901 TMEM258P61165 79 aa11.63□□□□□ -0.55
CHMP1A-201ENST00000397901 FAM104AQ969W3 186 aa11.63□□□□□ -0.55
CHMP1A-201ENST00000397901 Q9UF83 564 aa11.63□□□□□ -0.55
CHMP1A-201ENST00000397901 PRRC2AP48634 2157 aaKnown RBP11.62□□□□□ -0.55
CHMP1A-201ENST00000397901 DAND5Q8N907 189 aa11.62□□□□□ -0.55
CHMP1A-201ENST00000397901 DPH3Q96FX2 82 aa11.62□□□□□ -0.55
CHMP1A-201ENST00000397901 A8MZ25 164 aa11.61□□□□□ -0.55
CHMP1A-201ENST00000397901 ANKRD17O75179 2603 aaKnown RBP11.61□□□□□ -0.55
CHMP1A-201ENST00000397901 COX7A2LO14548 114 aa11.61□□□□□ -0.55
CHMP1A-201ENST00000397901 TIMM17BO60830 172 aa11.61□□□□□ -0.55
CHMP1A-201ENST00000397901 MRPS36P82909 103 aaKnown RBP11.61□□□□□ -0.55
CHMP1A-201ENST00000397901 DAZ2Q13117 558 aaKnown RBP11.61□□□□□ -0.55
CHMP1A-201ENST00000397901 DAZ4Q86SG3 579 aaKnown RBP11.61□□□□□ -0.55
CHMP1A-201ENST00000397901 DAZ3Q9NR90 486 aaKnown RBP11.61□□□□□ -0.55
CHMP1A-201ENST00000397901 LRRK2Q5S007 2527 aa11.6□□□□□ -0.55
CHMP1A-201ENST00000397901 HOXD3P31249 432 aaPredicted RBP11.6□□□□□ -0.55
CHMP1A-201ENST00000397901 ZNF843Q8N446 348 aa11.6□□□□□ -0.55
CHMP1A-201ENST00000397901 LINC01356Q8N9X3 169 aa11.6□□□□□ -0.55
CHMP1A-201ENST00000397901 USP9YO00507 2555 aaPredicted RBP11.6□□□□□ -0.55
CHMP1A-201ENST00000397901 CENPEQ02224 2701 aa11.6□□□□□ -0.55
CHMP1A-201ENST00000397901 ZANQ9Y493 2812 aa11.59□□□□□ -0.55
CHMP1A-201ENST00000397901 FAM208BQ5VWN6 2430 aa11.59□□□□□ -0.55
CHMP1A-201ENST00000397901 PYGO1Q9Y3Y4 419 aa11.59□□□□□ -0.55
CHMP1A-201ENST00000397901 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.58□□□□□ -0.56
CHMP1A-201ENST00000397901 IGKV2-29A2NJV5 120 aaPredicted RBP11.58□□□□□ -0.56
CHMP1A-201ENST00000397901 Q6ZSN1 163 aa11.58□□□□□ -0.56
CHMP1A-201ENST00000397901 VSIG2Q96IQ7 327 aa11.58□□□□□ -0.56
CHMP1A-201ENST00000397901 INAFM2P0DMQ5 153 aa11.58□□□□□ -0.56
CHMP1A-201ENST00000397901 DEFB131AP59861 70 aa11.58□□□□□ -0.56
CHMP1A-201ENST00000397901 RPL18AQ02543 176 aaKnown RBP11.58□□□□□ -0.56
CHMP1A-201ENST00000397901 POLQO75417 2590 aa11.57□□□□□ -0.56
CHMP1A-201ENST00000397901 TIRAPP58753 221 aa11.57□□□□□ -0.56
CHMP1A-201ENST00000397901 IGHV3-38A0A0C4DH36 116 aa11.57□□□□□ -0.56
CHMP1A-201ENST00000397901 BAALC-AS2P0C853 105 aa11.57□□□□□ -0.56
CHMP1A-201ENST00000397901 DEFB136Q30KP8 78 aa11.57□□□□□ -0.56
CHMP1A-201ENST00000397901 MAPK1IP1LQ8NDC0 245 aa11.57□□□□□ -0.56
CHMP1A-201ENST00000397901 KIR2DL5BQ8NHK3 375 aa11.57□□□□□ -0.56
CHMP1A-201ENST00000397901 CYSTM1Q9H1C7 97 aa11.57□□□□□ -0.56
CHMP1A-201ENST00000397901 F5H768 121 aa11.56□□□□□ -0.56
CHMP1A-201ENST00000397901 J3QLI3 93 aa11.55□□□□□ -0.56
CHMP1A-201ENST00000397901 RBMY1BA6NDE4 496 aaKnown RBP11.55□□□□□ -0.56
CHMP1A-201ENST00000397901 RBMY1EA6NEQ0 496 aaKnown RBP11.55□□□□□ -0.56
CHMP1A-201ENST00000397901 RBMY1DP0C7P1 496 aaKnown RBP11.55□□□□□ -0.56
CHMP1A-201ENST00000397901 FAM222AQ5U5X8 452 aa11.55□□□□□ -0.56
CHMP1A-201ENST00000397901 C18orf65Q6ZTR6 163 aa11.55□□□□□ -0.56
CHMP1A-201ENST00000397901 CHCHD7Q9BUK0 85 aa11.55□□□□□ -0.56
CHMP1A-201ENST00000397901 NACAE9PAV3 2078 aa11.55□□□□□ -0.56
CHMP1A-201ENST00000397901 TMEM89A2RUT3 159 aa11.54□□□□□ -0.56
CHMP1A-201ENST00000397901 SLURP1P55000 103 aa11.54□□□□□ -0.56
CHMP1A-201ENST00000397901 BEAN1Q3B7T3 259 aa11.54□□□□□ -0.56
CHMP1A-201ENST00000397901 SERP2Q8N6R1 65 aa11.54□□□□□ -0.56
CHMP1A-201ENST00000397901 LINC00467Q9BRT7 94 aa11.54□□□□□ -0.56
CHMP1A-201ENST00000397901 UBE2D4Q9Y2X8 147 aa11.54□□□□□ -0.56
CHMP1A-201ENST00000397901 TINCRA0A1B0GVN0 87 aa11.53□□□□□ -0.56
CHMP1A-201ENST00000397901 UPK3BQ9BT76 320 aa11.53□□□□□ -0.56
CHMP1A-201ENST00000397901 KRTAP10-9P60411 292 aa11.53□□□□□ -0.56
CHMP1A-201ENST00000397901 C4orf26Q17RF5 130 aa11.53□□□□□ -0.56
CHMP1A-201ENST00000397901 RNF152Q8N8N0 203 aa11.53□□□□□ -0.56
CHMP1A-201ENST00000397901 TRAV13-1A0A0B4J241 112 aa11.52□□□□□ -0.57
CHMP1A-201ENST00000397901 OXTP01178 125 aa11.52□□□□□ -0.57
CHMP1A-201ENST00000397901 CIRBPQ14011 172 aaKnown RBP11.52□□□□□ -0.57
CHMP1A-201ENST00000397901 C22orf24Q9Y442 160 aa11.52□□□□□ -0.57
CHMP1A-201ENST00000397901 MXRA5Q9NR99 2828 aa11.52□□□□□ -0.57
CHMP1A-201ENST00000397901 FSHBP01225 129 aa11.51□□□□□ -0.57
CHMP1A-201ENST00000397901 MRAPQ8TCY5 172 aa11.51□□□□□ -0.57
CHMP1A-201ENST00000397901 PTPN13Q12923 2485 aa11.51□□□□□ -0.57
CHMP1A-201ENST00000397901 CR1P17927 2039 aa11.51□□□□□ -0.57
CHMP1A-201ENST00000397901 ZNF415Q09FC8 603 aa11.51□□□□□ -0.57
CHMP1A-201ENST00000397901 Q5XG85 94 aa11.51□□□□□ -0.57
CHMP1A-201ENST00000397901 DSCR8Q96T75 97 aa11.51□□□□□ -0.57
CHMP1A-201ENST00000397901 LINC00308Q8TCZ7 52 aa11.5□□□□□ -0.57
CHMP1A-201ENST00000397901 UBE2E2Q96LR5 201 aa11.5□□□□□ -0.57
CHMP1A-201ENST00000397901 ZNF702PQ9H963 129 aa11.5□□□□□ -0.57
CHMP1A-201ENST00000397901 NDUFA1O15239 70 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 123.4 ms