RNA–Protein interactions for RNA: ENST00000395066.7

CLK3-202, Transcript of CDC like kinase 3, humanhuman

TSL 1 (best) BASIC

Gene CLK3, Length 2,621 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-202ENST00000395066 UBE2WQ96B02 151 aa14.95□□□□□ -0.02
CLK3-202ENST00000395066 USP24Q9UPU5 2620 aa14.95□□□□□ -0.02
CLK3-202ENST00000395066 C2CD3Q4AC94 2353 aa14.95□□□□□ -0.02
CLK3-202ENST00000395066 NHLRC4P0CG21 123 aaPredicted RBP14.95□□□□□ -0.02
CLK3-202ENST00000395066 C11orf44Q8N8P7 122 aa14.95□□□□□ -0.02
CLK3-202ENST00000395066 IGHV3OR16-12A0A075B7B8 117 aa14.94□□□□□ -0.02
CLK3-202ENST00000395066 GAGE5Q13069 117 aa14.94□□□□□ -0.02
CLK3-202ENST00000395066 GAGE6Q13070 117 aa14.94□□□□□ -0.02
CLK3-202ENST00000395066 UBE2D4Q9Y2X8 147 aa14.94□□□□□ -0.02
CLK3-202ENST00000395066 C2orf82Q6UX34 121 aa14.94□□□□□ -0.02
CLK3-202ENST00000395066 EDA2RQ9HAV5 297 aa14.94□□□□□ -0.02
CLK3-202ENST00000395066 ZNF415Q09FC8 603 aa14.93□□□□□ -0.02
CLK3-202ENST00000395066 MIAQ16674 131 aa14.93□□□□□ -0.02
CLK3-202ENST00000395066 JMJD1CQ15652 2540 aa14.92□□□□□ -0.02
CLK3-202ENST00000395066 NDUFV3P56181 108 aaKnown RBP14.92□□□□□ -0.02
CLK3-202ENST00000395066 DAND5Q8N907 189 aa14.92□□□□□ -0.02
CLK3-202ENST00000395066 C11orf72Q8NBR9 251 aa14.92□□□□□ -0.02
CLK3-202ENST00000395066 DYNLRB2Q8TF09 96 aa14.92□□□□□ -0.02
CLK3-202ENST00000395066 VSIG2Q96IQ7 327 aa14.92□□□□□ -0.02
CLK3-202ENST00000395066 XCL2Q9UBD3 114 aa14.92□□□□□ -0.02
CLK3-202ENST00000395066 H7C423 109 aa14.92□□□□□ -0.02
CLK3-202ENST00000395066 COX6CP09669 75 aa14.91□□□□□ -0.02
CLK3-202ENST00000395066 CCDC168Q8NDH2 2452 aa14.91□□□□□ -0.02
CLK3-202ENST00000395066 TINCRA0A1B0GVN0 87 aa14.91□□□□□ -0.02
CLK3-202ENST00000395066 SS18L2Q9UHA2 77 aa14.9□□□□□ -0.02
CLK3-202ENST00000395066 A8MTW9 85 aa14.89□□□□□ -0.03
CLK3-202ENST00000395066 TTC32Q5I0X7 151 aa14.89□□□□□ -0.03
CLK3-202ENST00000395066 Q6Q795 121 aa14.89□□□□□ -0.03
CLK3-202ENST00000395066 C15orf53Q8NAA6 179 aa14.89□□□□□ -0.03
CLK3-202ENST00000395066 H3BT86 120 aa14.89□□□□□ -0.03
CLK3-202ENST00000395066 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP14.89□□□□□ -0.03
CLK3-202ENST00000395066 A0A1W2PRX2 142 aa14.88□□□□□ -0.03
CLK3-202ENST00000395066 B5MCH6 92 aa14.88□□□□□ -0.03
CLK3-202ENST00000395066 IFITM1P13164 125 aa14.88□□□□□ -0.03
CLK3-202ENST00000395066 CLEC2BQ92478 149 aa14.88□□□□□ -0.03
CLK3-202ENST00000395066 PEMTQ9UBM1 199 aa14.88□□□□□ -0.03
CLK3-202ENST00000395066 CDKN2A-AS1Q9UH64 79 aa14.88□□□□□ -0.03
CLK3-202ENST00000395066 UBR5O95071 2799 aaPredicted RBP14.87□□□□□ -0.03
CLK3-202ENST00000395066 DEFB114Q30KQ6 69 aa14.87□□□□□ -0.03
CLK3-202ENST00000395066 SPANXA1Q9NS26 97 aa14.87□□□□□ -0.03
CLK3-202ENST00000395066 NDUFA7O95182 113 aa14.87□□□□□ -0.03
CLK3-202ENST00000395066 YAE1D1Q9NRH1 226 aa14.87□□□□□ -0.03
CLK3-202ENST00000395066 APCP25054 2843 aa14.86□□□□□ -0.03
CLK3-202ENST00000395066 BBC3Q96PG8 261 aaPredicted RBP14.86□□□□□ -0.03
CLK3-202ENST00000395066 IGHV3-53P01767 116 aa14.86□□□□□ -0.03
CLK3-202ENST00000395066 ITPR3Q14573 2671 aa14.86□□□□□ -0.03
CLK3-202ENST00000395066 C4orf3Q8WVX3 66 aa14.85□□□□□ -0.03
CLK3-202ENST00000395066 LST1O00453 97 aa14.85□□□□□ -0.03
CLK3-202ENST00000395066 INSP01308 110 aa14.85□□□□□ -0.03
CLK3-202ENST00000395066 COX6A2Q02221 97 aa14.85□□□□□ -0.03
CLK3-202ENST00000395066 A0A0U1RRA0 63 aa14.84□□□□□ -0.03
CLK3-202ENST00000395066 Q96MF0 132 aa14.84□□□□□ -0.03
CLK3-202ENST00000395066 SETXQ7Z333 2677 aaKnown RBP14.84□□□□□ -0.03
CLK3-202ENST00000395066 ODF3L2Q3SX64 289 aa14.84□□□□□ -0.03
CLK3-202ENST00000395066 ZNF625Q96I27 306 aaPredicted RBP14.84□□□□□ -0.03
CLK3-202ENST00000395066 TIMM17BO60830 172 aa14.83□□□□□ -0.04
CLK3-202ENST00000395066 LINC00694P0DN24 101 aa14.83□□□□□ -0.04
CLK3-202ENST00000395066 TRGV1A0A0A0MS02 117 aa14.82□□□□□ -0.04
CLK3-202ENST00000395066 GAGE12JA6NER3 117 aa14.82□□□□□ -0.04
CLK3-202ENST00000395066 GAGE7O76087 117 aa14.82□□□□□ -0.04
CLK3-202ENST00000395066 GAGE12FP0CL80 117 aa14.82□□□□□ -0.04
CLK3-202ENST00000395066 GAGE12GP0CL81 117 aa14.82□□□□□ -0.04
CLK3-202ENST00000395066 GAGE12IP0CL82 117 aa14.82□□□□□ -0.04
CLK3-202ENST00000395066 GAGE4Q13068 117 aa14.82□□□□□ -0.04
CLK3-202ENST00000395066 Q8N2B8 174 aa14.82□□□□□ -0.04
CLK3-202ENST00000395066 DGAT2L7PQ6IED9 249 aa14.81□□□□□ -0.04
CLK3-202ENST00000395066 CCDC179H3BU77 68 aa14.81□□□□□ -0.04
CLK3-202ENST00000395066 RS1O15537 224 aa14.8□□□□□ -0.04
CLK3-202ENST00000395066 C1orf158Q8N1D5 194 aa14.8□□□□□ -0.04
CLK3-202ENST00000395066 TMEM101Q96IK0 257 aa14.8□□□□□ -0.04
CLK3-202ENST00000395066 MRPL23Q16540 153 aaKnown RBP14.8□□□□□ -0.04
CLK3-202ENST00000395066 BEAN1Q3B7T3 259 aa14.8□□□□□ -0.04
CLK3-202ENST00000395066 DEFB121Q5J5C9 76 aa14.79□□□□□ -0.04
CLK3-202ENST00000395066 FAM240AA0A1B0GVK7 77 aa14.79□□□□□ -0.04
CLK3-202ENST00000395066 FLNAP21333 2647 aaKnown RBP14.79□□□□□ -0.04
CLK3-202ENST00000395066 NDUFA1O15239 70 aa14.79□□□□□ -0.04
CLK3-202ENST00000395066 DEFB113Q30KQ7 82 aa14.79□□□□□ -0.04
CLK3-202ENST00000395066 Q6ZTI0 123 aa14.79□□□□□ -0.04
CLK3-202ENST00000395066 PIK3CD-AS1Q5SR53 167 aa14.78□□□□□ -0.04
CLK3-202ENST00000395066 STHQ8IWL8 128 aa14.78□□□□□ -0.04
CLK3-202ENST00000395066 TRAV13-1A0A0B4J241 112 aa14.77□□□□□ -0.04
CLK3-202ENST00000395066 CITED2Q99967 270 aaPredicted RBP14.77□□□□□ -0.04
CLK3-202ENST00000395066 DNAJC30Q96LL9 226 aa14.77□□□□□ -0.05
CLK3-202ENST00000395066 TIRAPP58753 221 aa14.76□□□□□ -0.05
CLK3-202ENST00000395066 IGLV5-45A0A087WSX0 123 aa14.76□□□□□ -0.05
CLK3-202ENST00000395066 CIRBPQ14011 172 aaKnown RBP14.76□□□□□ -0.05
CLK3-202ENST00000395066 LINC00242Q5T6M2 205 aa14.75□□□□□ -0.05
CLK3-202ENST00000395066 NTM-AS1Q6ZSK4 140 aa14.75□□□□□ -0.05
CLK3-202ENST00000395066 Q9H8V8 135 aa14.75□□□□□ -0.05
CLK3-202ENST00000395066 ACANP16112 2415 aa14.75□□□□□ -0.05
CLK3-202ENST00000395066 WFDC10AQ9H1F0 79 aa14.75□□□□□ -0.05
CLK3-202ENST00000395066 MTORP42345 2549 aa14.74□□□□□ -0.05
CLK3-202ENST00000395066 LINC00308Q8TCZ7 52 aa14.74□□□□□ -0.05
CLK3-202ENST00000395066 KRTAP1-3Q8IUG1 177 aa14.72□□□□□ -0.05
CLK3-202ENST00000395066 DNAJC9-AS1A6NH13 148 aa14.71□□□□□ -0.06
CLK3-202ENST00000395066 PLA2G2AP14555 144 aa14.71□□□□□ -0.06
CLK3-202ENST00000395066 NOP10Q9NPE3 64 aaKnown RBP14.71□□□□□ -0.06
CLK3-202ENST00000395066 IGLV5-39A0A0G2JS06 123 aa14.7□□□□□ -0.06
CLK3-202ENST00000395066 ESM1Q9NQ30 184 aa14.7□□□□□ -0.06
CLK3-202ENST00000395066 LOC100131303A0A0U1RQF7 123 aa14.69□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms