RNA–Protein interactions for RNA: ENST00000393310.5

LIMS1-203, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 4,392 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-203ENST00000393310 TRBV12-3P01733 135 aa6.08□□□□□ -1.44
LIMS1-203ENST00000393310 SCXQ7RTU7 201 aa6.08□□□□□ -1.44
LIMS1-203ENST00000393310 TRBV7-6A0A0J9YX20 115 aa6.08□□□□□ -1.44
LIMS1-203ENST00000393310 M0R2N4 97 aa6.08□□□□□ -1.44
LIMS1-203ENST00000393310 IGHV3-23P01764 117 aa6.08□□□□□ -1.44
LIMS1-203ENST00000393310 SCGB3A1Q96QR1 104 aa6.08□□□□□ -1.44
LIMS1-203ENST00000393310 XCL2Q9UBD3 114 aa6.08□□□□□ -1.44
LIMS1-203ENST00000393310 PRRC2CQ9Y520 2896 aaKnown RBP6.07□□□□□ -1.44
LIMS1-203ENST00000393310 DKK2Q9UBU2 259 aa6.07□□□□□ -1.44
LIMS1-203ENST00000393310 RHOHQ15669 191 aa6.07□□□□□ -1.44
LIMS1-203ENST00000393310 SPANXN1Q5VSR9 72 aa6.07□□□□□ -1.44
LIMS1-203ENST00000393310 C11orf53Q8IXP5 236 aa6.07□□□□□ -1.44
LIMS1-203ENST00000393310 FAM19A4Q96LR4 140 aa6.07□□□□□ -1.44
LIMS1-203ENST00000393310 CRYBG3Q68DQ2 2970 aa6.07□□□□□ -1.44
LIMS1-203ENST00000393310 TEX49A0A1B0GTD5 131 aa6.06□□□□□ -1.44
LIMS1-203ENST00000393310 EIF4EBP3O60516 100 aaPredicted RBP6.06□□□□□ -1.44
LIMS1-203ENST00000393310 FAM19A1Q7Z5A9 133 aa6.06□□□□□ -1.44
LIMS1-203ENST00000393310 UBR5O95071 2799 aaPredicted RBP6.06□□□□□ -1.44
LIMS1-203ENST00000393310 ANK2Q01484 3957 aa6.06□□□□□ -1.44
LIMS1-203ENST00000393310 KIAA1549Q9HCM3 1950 aa6.06□□□□□ -1.44
LIMS1-203ENST00000393310 MGPP08493 103 aa6.06□□□□□ -1.44
LIMS1-203ENST00000393310 IGHV3-49A0A0A0MS15 119 aa6.06□□□□□ -1.44
LIMS1-203ENST00000393310 C17orf58Q2M2W7 97 aa6.06□□□□□ -1.44
LIMS1-203ENST00000393310 Q6P435 159 aa6.06□□□□□ -1.44
LIMS1-203ENST00000393310 DYNAPQ8N1N2 210 aa6.06□□□□□ -1.44
LIMS1-203ENST00000393310 C7orf33Q8WU49 177 aa6.06□□□□□ -1.44
LIMS1-203ENST00000393310 LINC00476Q8WZB0 136 aa6.06□□□□□ -1.44
LIMS1-203ENST00000393310 TIMM21Q9BVV7 248 aa6.06□□□□□ -1.44
LIMS1-203ENST00000393310 TMEM61Q8N0U2 210 aa6.05□□□□□ -1.44
LIMS1-203ENST00000393310 C1orf147Q96MC9 270 aaPredicted RBP6.05□□□□□ -1.44
LIMS1-203ENST00000393310 TEPPQ6URK8 271 aa6.05□□□□□ -1.44
LIMS1-203ENST00000393310 C16orf74Q96GX8 76 aa6.05□□□□□ -1.44
LIMS1-203ENST00000393310 UPK3BQ9BT76 320 aa6.05□□□□□ -1.44
LIMS1-203ENST00000393310 IGHV3-21A0A0B4J1V1 117 aa6.05□□□□□ -1.44
LIMS1-203ENST00000393310 ERCC8Q13216 396 aa6.05□□□□□ -1.44
LIMS1-203ENST00000393310 SPRNQ5BIV9 151 aa6.05□□□□□ -1.44
LIMS1-203ENST00000393310 ATP5EP2Q5VTU8 51 aa6.05□□□□□ -1.44
LIMS1-203ENST00000393310 EPM2AB3EWF7 344 aa6.04□□□□□ -1.44
LIMS1-203ENST00000393310 MRPL51Q4U2R6 128 aaKnown RBP6.04□□□□□ -1.44
LIMS1-203ENST00000393310 EXPH5Q8NEV8 1989 aa6.04□□□□□ -1.44
LIMS1-203ENST00000393310 TRAV23DV6A0A075B6W5 121 aa6.04□□□□□ -1.44
LIMS1-203ENST00000393310 IGHV3OR16-13A0A075B7E8 117 aa6.04□□□□□ -1.44
LIMS1-203ENST00000393310 IGHV3-74A0A0B4J1X5 117 aa6.04□□□□□ -1.44
LIMS1-203ENST00000393310 F8WEM9 126 aa6.04□□□□□ -1.44
LIMS1-203ENST00000393310 C2orf91Q6ZV80 131 aa6.04□□□□□ -1.44
LIMS1-203ENST00000393310 ANK3Q12955 4377 aaKnown RBP6.04□□□□□ -1.44
LIMS1-203ENST00000393310 HAMPP81172 84 aa6.04□□□□□ -1.44
LIMS1-203ENST00000393310 MED14OSP0DP75 135 aa6.04□□□□□ -1.44
LIMS1-203ENST00000393310 CFHR3Q02985 330 aa6.04□□□□□ -1.44
LIMS1-203ENST00000393310 ESRGQ1W209 222 aa6.04□□□□□ -1.44
LIMS1-203ENST00000393310 PCNX3Q9H6A9 2034 aa6.03□□□□□ -1.44
LIMS1-203ENST00000393310 IGLV2-18A0A075B6J9 118 aa6.03□□□□□ -1.44
LIMS1-203ENST00000393310 TRBV6-6A0A0A6YYG2 114 aa6.03□□□□□ -1.44
LIMS1-203ENST00000393310 MRPS12O15235 138 aaKnown RBP6.03□□□□□ -1.44
LIMS1-203ENST00000393310 KRTAP27-1Q3LI81 207 aa6.03□□□□□ -1.44
LIMS1-203ENST00000393310 Q6ZVQ6 151 aa6.03□□□□□ -1.44
LIMS1-203ENST00000393310 TM2D3Q9BRN9 247 aa6.03□□□□□ -1.44
LIMS1-203ENST00000393310 KLK15Q9H2R5 256 aa6.03□□□□□ -1.44
LIMS1-203ENST00000393310 PRR15Q8IV56 129 aa6.03□□□□□ -1.44
LIMS1-203ENST00000393310 TRBV5-5A0A0J9YX44 114 aa6.03□□□□□ -1.44
LIMS1-203ENST00000393310 C6orf99Q4VX62 202 aa6.03□□□□□ -1.44
LIMS1-203ENST00000393310 SDIM1Q6ZPB5 146 aa6.03□□□□□ -1.44
LIMS1-203ENST00000393310 C6orf223Q8N319 242 aa6.03□□□□□ -1.44
LIMS1-203ENST00000393310 CCL28Q9NRJ3 127 aa6.03□□□□□ -1.44
LIMS1-203ENST00000393310 HHLA3Q9XRX5 114 aa6.03□□□□□ -1.44
LIMS1-203ENST00000393310 C1orf100Q5SVJ3 147 aa6.02□□□□□ -1.45
LIMS1-203ENST00000393310 PHLDA3Q9Y5J5 127 aa6.02□□□□□ -1.45
LIMS1-203ENST00000393310 PRM2P04554 102 aa6.02□□□□□ -1.45
LIMS1-203ENST00000393310 XCL1P47992 114 aa6.02□□□□□ -1.45
LIMS1-203ENST00000393310 CASC2Q6XLA1 102 aa6.02□□□□□ -1.45
LIMS1-203ENST00000393310 RPP25LQ8N5L8 163 aaKnown RBP6.02□□□□□ -1.45
LIMS1-203ENST00000393310 ZNF726P1Q15940 193 aa6.02□□□□□ -1.45
LIMS1-203ENST00000393310 IGHV4-4A0A075B6R2 117 aa6.02□□□□□ -1.45
LIMS1-203ENST00000393310 ZNF581Q9P0T4 197 aa6.02□□□□□ -1.45
LIMS1-203ENST00000393310 TRRAPQ9Y4A5 3859 aa6.01□□□□□ -1.45
LIMS1-203ENST00000393310 BAALC-AS2P0C853 105 aa6.01□□□□□ -1.45
LIMS1-203ENST00000393310 NRACQ8N912 160 aa6.01□□□□□ -1.45
LIMS1-203ENST00000393310 CENPEQ02224 2701 aa6.01□□□□□ -1.45
LIMS1-203ENST00000393310 TRGV1A0A0A0MS02 117 aa6.01□□□□□ -1.45
LIMS1-203ENST00000393310 TMEM14DPA8MWL7 114 aa6.01□□□□□ -1.45
LIMS1-203ENST00000393310 K7ERS5 55 aa6.01□□□□□ -1.45
LIMS1-203ENST00000393310 PROP1O75360 226 aa6.01□□□□□ -1.45
LIMS1-203ENST00000393310 ZFP2Q6ZN57 461 aa6.01□□□□□ -1.45
LIMS1-203ENST00000393310 TP73-AS1Q9UF72 201 aa6.01□□□□□ -1.45
LIMS1-203ENST00000393310 SUPT4H1P63272 117 aaKnown RBP6□□□□□ -1.45
LIMS1-203ENST00000393310 MAP6D1Q9H9H5 199 aa6□□□□□ -1.45
LIMS1-203ENST00000393310 S4R3C0 116 aa6□□□□□ -1.45
LIMS1-203ENST00000393310 TRBV5-7A0A0A0MS05 114 aa6□□□□□ -1.45
LIMS1-203ENST00000393310 IGLV1-40P01703 118 aa6□□□□□ -1.45
LIMS1-203ENST00000393310 V9GYV3 84 aa6□□□□□ -1.45
LIMS1-203ENST00000393310 ADARB2-AS1A8MUL3 147 aa6□□□□□ -1.45
LIMS1-203ENST00000393310 FAM19A3Q7Z5A8 133 aa6□□□□□ -1.45
LIMS1-203ENST00000393310 TRAV7A0A075B6U4 112 aa5.99□□□□□ -1.45
LIMS1-203ENST00000393310 PSPHP1O15172 72 aa5.99□□□□□ -1.45
LIMS1-203ENST00000393310 NANOS3P60323 173 aaKnown RBP5.99□□□□□ -1.45
LIMS1-203ENST00000393310 C7orf65Q6ZTY9 151 aa5.99□□□□□ -1.45
LIMS1-203ENST00000393310 PRNTQ86SH4 94 aa5.99□□□□□ -1.45
LIMS1-203ENST00000393310 Q8N976 141 aa5.99□□□□□ -1.45
LIMS1-203ENST00000393310 ZNF625Q96I27 306 aaPredicted RBP5.99□□□□□ -1.45
LIMS1-203ENST00000393310 FAM30AQ9NZY2 134 aa5.99□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 89 ms