RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 DAZ4Q86SG3 579 aaKnown RBP12.92□□□□□ -0.34
CCDC88C-203ENST00000389856 DAZ3Q9NR90 486 aaKnown RBP12.92□□□□□ -0.34
CCDC88C-203ENST00000389856 A0A1B0GWB2 263 aa12.91□□□□□ -0.34
CCDC88C-203ENST00000389856 COTL1Q14019 142 aa12.91□□□□□ -0.34
CCDC88C-203ENST00000389856 KPRPQ5T749 579 aaPredicted RBP12.91□□□□□ -0.34
CCDC88C-203ENST00000389856 SLC25A29Q8N8R3 303 aa12.91□□□□□ -0.34
CCDC88C-203ENST00000389856 TRRAPQ9Y4A5 3859 aa12.91□□□□□ -0.34
CCDC88C-203ENST00000389856 TMEM238LA0A1B0GVL6 79 aa12.91□□□□□ -0.34
CCDC88C-203ENST00000389856 A6NJY4 79 aa12.91□□□□□ -0.34
CCDC88C-203ENST00000389856 DAD1P61803 113 aa12.91□□□□□ -0.34
CCDC88C-203ENST00000389856 ZNRF2Q8NHG8 242 aa12.91□□□□□ -0.34
CCDC88C-203ENST00000389856 PHLDA1Q8WV24 401 aaPredicted RBP12.91□□□□□ -0.34
CCDC88C-203ENST00000389856 VCX2Q9H322 139 aa12.91□□□□□ -0.34
CCDC88C-203ENST00000389856 SPANXA1Q9NS26 97 aa12.9□□□□□ -0.34
CCDC88C-203ENST00000389856 FHL2Q14192 279 aa12.89□□□□□ -0.35
CCDC88C-203ENST00000389856 RAB37Q96AX2 223 aa12.89□□□□□ -0.35
CCDC88C-203ENST00000389856 NHP2Q9NX24 153 aaKnown RBP12.89□□□□□ -0.35
CCDC88C-203ENST00000389856 IGLV4-3A0A075B6K6 122 aa12.88□□□□□ -0.35
CCDC88C-203ENST00000389856 SMAGPQ0VAQ4 97 aa12.88□□□□□ -0.35
CCDC88C-203ENST00000389856 TMEM170BQ5T4T1 132 aa12.88□□□□□ -0.35
CCDC88C-203ENST00000389856 SCGB1D4Q6XE38 83 aa12.88□□□□□ -0.35
CCDC88C-203ENST00000389856 SPANXB1Q9NS25 103 aaPredicted RBP12.88□□□□□ -0.35
CCDC88C-203ENST00000389856 LEPROTO15243 131 aa12.88□□□□□ -0.35
CCDC88C-203ENST00000389856 C12orf74Q32Q52 190 aa12.88□□□□□ -0.35
CCDC88C-203ENST00000389856 PLEKHB2Q96CS7 222 aa12.88□□□□□ -0.35
CCDC88C-203ENST00000389856 AMELXQ99217 191 aa12.88□□□□□ -0.35
CCDC88C-203ENST00000389856 SPCS1Q9Y6A9 102 aa12.88□□□□□ -0.35
CCDC88C-203ENST00000389856 ATP5G1P05496 136 aa12.87□□□□□ -0.35
CCDC88C-203ENST00000389856 UBE2D3P61077 147 aa12.87□□□□□ -0.35
CCDC88C-203ENST00000389856 UBE2D2P62837 147 aa12.87□□□□□ -0.35
CCDC88C-203ENST00000389856 PRO0255Q9UI72 69 aa12.87□□□□□ -0.35
CCDC88C-203ENST00000389856 TMEM223A0PJW6 202 aa12.86□□□□□ -0.35
CCDC88C-203ENST00000389856 C11orf68Q9H3H3 251 aaKnown RBP12.86□□□□□ -0.35
CCDC88C-203ENST00000389856 GAGE12JA6NER3 117 aa12.85□□□□□ -0.35
CCDC88C-203ENST00000389856 LGALS3P17931 250 aaKnown RBP12.85□□□□□ -0.35
CCDC88C-203ENST00000389856 GAGE4Q13068 117 aa12.85□□□□□ -0.35
CCDC88C-203ENST00000389856 GAGE5Q13069 117 aa12.85□□□□□ -0.35
CCDC88C-203ENST00000389856 GAGE13Q4V321 117 aa12.85□□□□□ -0.35
CCDC88C-203ENST00000389856 IGLL5B9A064 214 aa12.84□□□□□ -0.35
CCDC88C-203ENST00000389856 J3QQQ9 107 aa12.84□□□□□ -0.35
CCDC88C-203ENST00000389856 DEFB4AO15263 64 aa12.84□□□□□ -0.35
CCDC88C-203ENST00000389856 SPATA25Q9BR10 227 aa12.84□□□□□ -0.35
CCDC88C-203ENST00000389856 TIMM21Q9BVV7 248 aa12.84□□□□□ -0.35
CCDC88C-203ENST00000389856 CBY1Q9Y3M2 126 aa12.84□□□□□ -0.35
CCDC88C-203ENST00000389856 A0A0J9YY99 117 aa12.84□□□□□ -0.35
CCDC88C-203ENST00000389856 GTSF1LQ9H1H1 148 aa12.84□□□□□ -0.35
CCDC88C-203ENST00000389856 ZNF22P17026 224 aaPredicted RBP12.83□□□□□ -0.36
CCDC88C-203ENST00000389856 MRPS36P82909 103 aaKnown RBP12.83□□□□□ -0.36
CCDC88C-203ENST00000389856 SRSF9Q13242 221 aaKnown RBP eCLIP12.83□□□□□ -0.36
CCDC88C-203ENST00000389856 CHCHD7Q9BUK0 85 aa12.83□□□□□ -0.36
CCDC88C-203ENST00000389856 IGHV3-38A0A0C4DH36 116 aa12.82□□□□□ -0.36
CCDC88C-203ENST00000389856 Q9UF83 564 aa12.82□□□□□ -0.36
CCDC88C-203ENST00000389856 PAX4O43316 350 aa12.81□□□□□ -0.36
CCDC88C-203ENST00000389856 DEFB121Q5J5C9 76 aa12.81□□□□□ -0.36
CCDC88C-203ENST00000389856 DEFB104AQ8WTQ1 72 aa12.81□□□□□ -0.36
CCDC88C-203ENST00000389856 PKD1L1Q8TDX9 2849 aa12.81□□□□□ -0.36
CCDC88C-203ENST00000389856 ANK2Q01484 3957 aa12.81□□□□□ -0.36
CCDC88C-203ENST00000389856 K7EIL1 84 aa12.8□□□□□ -0.36
CCDC88C-203ENST00000389856 K7ERJ3 54 aa12.8□□□□□ -0.36
CCDC88C-203ENST00000389856 OPRPNQ99935 248 aaPredicted RBP12.8□□□□□ -0.36
CCDC88C-203ENST00000389856 RETNQ9HD89 108 aa12.8□□□□□ -0.36
CCDC88C-203ENST00000389856 UBE2D4Q9Y2X8 147 aa12.8□□□□□ -0.36
CCDC88C-203ENST00000389856 TINCRA0A1B0GVN0 87 aa12.8□□□□□ -0.36
CCDC88C-203ENST00000389856 K7ERU9 68 aa12.8□□□□□ -0.36
CCDC88C-203ENST00000389856 UBE2D1P51668 147 aa12.8□□□□□ -0.36
CCDC88C-203ENST00000389856 CELA1Q9UNI1 258 aa12.8□□□□□ -0.36
CCDC88C-203ENST00000389856 A0A0J9YXV3 536 aa12.79□□□□□ -0.36
CCDC88C-203ENST00000389856 H7C423 109 aa12.79□□□□□ -0.36
CCDC88C-203ENST00000389856 GYPEP15421 78 aa12.79□□□□□ -0.36
CCDC88C-203ENST00000389856 OCIAD2Q56VL3 154 aa12.79□□□□□ -0.36
CCDC88C-203ENST00000389856 SH2D6Q7Z4S9 175 aa12.79□□□□□ -0.36
CCDC88C-203ENST00000389856 UBE2L6O14933 153 aa12.78□□□□□ -0.36
CCDC88C-203ENST00000389856 LINC00694P0DN24 101 aa12.78□□□□□ -0.36
CCDC88C-203ENST00000389856 TSPEAR-AS2P59090 65 aa12.78□□□□□ -0.36
CCDC88C-203ENST00000389856 DGAT2L7PQ6IED9 249 aa12.78□□□□□ -0.36
CCDC88C-203ENST00000389856 FAM104AQ969W3 186 aa12.78□□□□□ -0.36
CCDC88C-203ENST00000389856 NAA38Q9BRA0 125 aaKnown RBP12.78□□□□□ -0.36
CCDC88C-203ENST00000389856 F5H768 121 aa12.77□□□□□ -0.36
CCDC88C-203ENST00000389856 TMEM243Q9BU79 118 aa12.77□□□□□ -0.36
CCDC88C-203ENST00000389856 LOC100131303A0A0U1RQF7 123 aa12.77□□□□□ -0.37
CCDC88C-203ENST00000389856 LYRM7Q5U5X0 104 aa12.77□□□□□ -0.37
CCDC88C-203ENST00000389856 SBSPONQ8IVN8 264 aa12.77□□□□□ -0.37
CCDC88C-203ENST00000389856 ATP6V0E2Q8NHE4 81 aa12.77□□□□□ -0.37
CCDC88C-203ENST00000389856 TM2D3Q9BRN9 247 aa12.77□□□□□ -0.37
CCDC88C-203ENST00000389856 IGHV3-30P01768 117 aa12.76□□□□□ -0.37
CCDC88C-203ENST00000389856 PRB2P02812 416 aaPredicted RBP12.76□□□□□ -0.37
CCDC88C-203ENST00000389856 IGHV3-30-5P0DP03 117 aa12.76□□□□□ -0.37
CCDC88C-203ENST00000389856 CSDC2Q9Y534 153 aaKnown RBP12.76□□□□□ -0.37
CCDC88C-203ENST00000389856 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.75□□□□□ -0.37
CCDC88C-203ENST00000389856 TRAV26-1A0A087WT03 109 aa12.75□□□□□ -0.37
CCDC88C-203ENST00000389856 IGKV2-29A2NJV5 120 aaPredicted RBP12.75□□□□□ -0.37
CCDC88C-203ENST00000389856 TMEM238C9JI98 176 aa12.75□□□□□ -0.37
CCDC88C-203ENST00000389856 TIRAPP58753 221 aa12.75□□□□□ -0.37
CCDC88C-203ENST00000389856 RBX1P62877 108 aa12.74□□□□□ -0.37
CCDC88C-203ENST00000389856 TMEM101Q96IK0 257 aa12.74□□□□□ -0.37
CCDC88C-203ENST00000389856 NBEAL2Q6ZNJ1 2754 aa12.74□□□□□ -0.37
CCDC88C-203ENST00000389856 TRBV6-8A0A0A6YYG3 113 aa12.73□□□□□ -0.37
CCDC88C-203ENST00000389856 IGHV1-58A0A0C4DH39 117 aa12.73□□□□□ -0.37
CCDC88C-203ENST00000389856 F8W1H4 67 aa12.73□□□□□ -0.37
CCDC88C-203ENST00000389856 HTN3P15516 51 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 125.6 ms