RNA–Protein interactions for RNA: ENST00000378156.8

NPHP4-201, Transcript of nephrocystin 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPHP4, Length 4,994 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-201ENST00000378156 DIRC1Q969H9 104 aa11.23□□□□□ -0.61
NPHP4-201ENST00000378156 NDUFA1O15239 70 aa11.23□□□□□ -0.61
NPHP4-201ENST00000378156 Q6ZTI0 123 aa11.23□□□□□ -0.61
NPHP4-201ENST00000378156 C11orf21Q9P2W6 132 aa11.23□□□□□ -0.61
NPHP4-201ENST00000378156 CHKB-CPT1BH3BT56 60 aa11.23□□□□□ -0.61
NPHP4-201ENST00000378156 CEMP1Q6PRD7 247 aaPredicted RBP11.23□□□□□ -0.61
NPHP4-201ENST00000378156 A0A0J9YXY3 114 aa11.23□□□□□ -0.61
NPHP4-201ENST00000378156 GAS8-AS1O95177 125 aa11.23□□□□□ -0.61
NPHP4-201ENST00000378156 ATP5EP2Q5VTU8 51 aa11.23□□□□□ -0.61
NPHP4-201ENST00000378156 IGHV4-28A0A0C4DH34 117 aa11.22□□□□□ -0.61
NPHP4-201ENST00000378156 Q8N976 141 aa11.22□□□□□ -0.61
NPHP4-201ENST00000378156 BRK1Q8WUW1 75 aa11.22□□□□□ -0.61
NPHP4-201ENST00000378156 P0DMU3 169 aa11.21□□□□□ -0.61
NPHP4-201ENST00000378156 FAM231AP0DMU4 169 aa11.21□□□□□ -0.61
NPHP4-201ENST00000378156 FAM231CP0DMU5 169 aa11.21□□□□□ -0.61
NPHP4-201ENST00000378156 URB1-AS1Q96HZ7 61 aa11.21□□□□□ -0.61
NPHP4-201ENST00000378156 RANBP2P49792 3224 aaKnown RBP11.21□□□□□ -0.61
NPHP4-201ENST00000378156 NFE4Q86UQ8 179 aa11.21□□□□□ -0.61
NPHP4-201ENST00000378156 ZNF702PQ9H963 129 aa11.21□□□□□ -0.61
NPHP4-201ENST00000378156 C14orf132Q9NPU4 83 aa11.21□□□□□ -0.62
NPHP4-201ENST00000378156 KLK12Q9UKR0 248 aa11.2□□□□□ -0.62
NPHP4-201ENST00000378156 F8W735 103 aaPredicted RBP11.2□□□□□ -0.62
NPHP4-201ENST00000378156 MAPKAPK5-AS1Q8N8E1 139 aa11.2□□□□□ -0.62
NPHP4-201ENST00000378156 NEXN-AS1Q8NBZ9 246 aa11.2□□□□□ -0.62
NPHP4-201ENST00000378156 C3orf22Q8N5N4 141 aa11.2□□□□□ -0.62
NPHP4-201ENST00000378156 Q6ZS46 218 aa11.19□□□□□ -0.62
NPHP4-201ENST00000378156 TEX49A0A1B0GTD5 131 aa11.19□□□□□ -0.62
NPHP4-201ENST00000378156 PRR9Q5T870 116 aa11.19□□□□□ -0.62
NPHP4-201ENST00000378156 RPL18AQ02543 176 aaKnown RBP11.19□□□□□ -0.62
NPHP4-201ENST00000378156 MKI67P46013 3256 aaKnown RBP11.19□□□□□ -0.62
NPHP4-201ENST00000378156 LINC01006Q8NI28 216 aa11.18□□□□□ -0.62
NPHP4-201ENST00000378156 UPK3BQ9BT76 320 aa11.18□□□□□ -0.62
NPHP4-201ENST00000378156 MTORP42345 2549 aa11.18□□□□□ -0.62
NPHP4-201ENST00000378156 AVPP01185 164 aa11.18□□□□□ -0.62
NPHP4-201ENST00000378156 C20orf197Q8N268 126 aa11.18□□□□□ -0.62
NPHP4-201ENST00000378156 C2orf91Q6ZV80 131 aa11.18□□□□□ -0.62
NPHP4-201ENST00000378156 TRAV23DV6A0A075B6W5 121 aa11.17□□□□□ -0.62
NPHP4-201ENST00000378156 FAM236DA0A1B0GTK5 79 aa11.17□□□□□ -0.62
NPHP4-201ENST00000378156 NCR3O14931 201 aa11.17□□□□□ -0.62
NPHP4-201ENST00000378156 MRPS12O15235 138 aaKnown RBP11.17□□□□□ -0.62
NPHP4-201ENST00000378156 LY6G6DO95868 133 aa11.17□□□□□ -0.62
NPHP4-201ENST00000378156 FAM236CP0DP71 79 aa11.17□□□□□ -0.62
NPHP4-201ENST00000378156 IMUPQ9GZP8 106 aa11.17□□□□□ -0.62
NPHP4-201ENST00000378156 SPAG11BQ08648 103 aa11.17□□□□□ -0.62
NPHP4-201ENST00000378156 TRBV30A0A0K0K1B3 111 aa11.17□□□□□ -0.62
NPHP4-201ENST00000378156 A0A1W2PPR1 153 aa11.17□□□□□ -0.62
NPHP4-201ENST00000378156 SMIM9A6NGZ8 99 aa11.17□□□□□ -0.62
NPHP4-201ENST00000378156 IGLV1-40P01703 118 aa11.17□□□□□ -0.62
NPHP4-201ENST00000378156 FAM222AQ5U5X8 452 aa11.17□□□□□ -0.62
NPHP4-201ENST00000378156 PKD1L2Q7Z442 2459 aa11.17□□□□□ -0.62
NPHP4-201ENST00000378156 TIRAPP58753 221 aa11.16□□□□□ -0.62
NPHP4-201ENST00000378156 NRACQ8N912 160 aa11.16□□□□□ -0.62
NPHP4-201ENST00000378156 COX7BP24311 80 aa11.15□□□□□ -0.63
NPHP4-201ENST00000378156 TNRC6BQ9UPQ9 1833 aaKnown RBP11.14□□□□□ -0.63
NPHP4-201ENST00000378156 BPY2O14599 106 aa11.14□□□□□ -0.63
NPHP4-201ENST00000378156 COL4A2P08572 1712 aa11.14□□□□□ -0.63
NPHP4-201ENST00000378156 PRB2P02812 416 aaPredicted RBP11.14□□□□□ -0.63
NPHP4-201ENST00000378156 LYRM9A8MSI8 78 aa11.13□□□□□ -0.63
NPHP4-201ENST00000378156 RNASE3P12724 160 aaKnown RBP11.13□□□□□ -0.63
NPHP4-201ENST00000378156 KRTAP10-9P60411 292 aa11.13□□□□□ -0.63
NPHP4-201ENST00000378156 HILS1P60008 231 aa11.13□□□□□ -0.63
NPHP4-201ENST00000378156 C11orf45Q8TAV5 145 aa11.13□□□□□ -0.63
NPHP4-201ENST00000378156 CHD9Q3L8U1 2897 aa11.13□□□□□ -0.63
NPHP4-201ENST00000378156 TMEM223A0PJW6 202 aa11.13□□□□□ -0.63
NPHP4-201ENST00000378156 SDIM1Q6ZPB5 146 aa11.12□□□□□ -0.63
NPHP4-201ENST00000378156 FAM240AA0A1B0GVK7 77 aa11.12□□□□□ -0.63
NPHP4-201ENST00000378156 PLA2G2AP14555 144 aa11.12□□□□□ -0.63
NPHP4-201ENST00000378156 ZNF22P17026 224 aaPredicted RBP11.12□□□□□ -0.63
NPHP4-201ENST00000378156 BRCA2P51587 3418 aa11.12□□□□□ -0.63
NPHP4-201ENST00000378156 LINC00482Q8N8I6 264 aa11.12□□□□□ -0.63
NPHP4-201ENST00000378156 NDUFC2-KCTD14E9PQ53 114 aa11.11□□□□□ -0.63
NPHP4-201ENST00000378156 M0QY20 66 aa11.11□□□□□ -0.63
NPHP4-201ENST00000378156 SHISA2Q6UWI4 295 aa11.11□□□□□ -0.63
NPHP4-201ENST00000378156 SVIPQ8NHG7 77 aa11.11□□□□□ -0.63
NPHP4-201ENST00000378156 FAM110AQ9BQ89 295 aa11.11□□□□□ -0.63
NPHP4-201ENST00000378156 C18orf65Q6ZTR6 163 aa11.11□□□□□ -0.63
NPHP4-201ENST00000378156 EPG5Q9HCE0 2579 aa11.11□□□□□ -0.63
NPHP4-201ENST00000378156 MRGPRG-AS1Q2M3A8 158 aa11.11□□□□□ -0.63
NPHP4-201ENST00000378156 A0A0C4DFX4 3053 aa11.11□□□□□ -0.63
NPHP4-201ENST00000378156 TET2Q6N021 2002 aaPredicted RBP11.11□□□□□ -0.63
NPHP4-201ENST00000378156 TRIAP1O43715 76 aa11.1□□□□□ -0.63
NPHP4-201ENST00000378156 CNFNQ9BYD5 112 aa11.1□□□□□ -0.63
NPHP4-201ENST00000378156 CFAP126Q5VTH2 177 aa11.1□□□□□ -0.63
NPHP4-201ENST00000378156 ATP5EP56381 51 aaPredicted RBP11.1□□□□□ -0.63
NPHP4-201ENST00000378156 UFSP1Q6NVU6 142 aa11.1□□□□□ -0.63
NPHP4-201ENST00000378156 NDUFA7O95182 113 aa11.1□□□□□ -0.63
NPHP4-201ENST00000378156 PROK1P58294 105 aa11.1□□□□□ -0.63
NPHP4-201ENST00000378156 LINC00467Q9BRT7 94 aa11.1□□□□□ -0.63
NPHP4-201ENST00000378156 LAMA3Q16787 3333 aa11.1□□□□□ -0.63
NPHP4-201ENST00000378156 IGLV4-3A0A075B6K6 122 aa11.09□□□□□ -0.63
NPHP4-201ENST00000378156 NDUFC1O43677 76 aa11.09□□□□□ -0.63
NPHP4-201ENST00000378156 LINC00308Q8TCZ7 52 aa11.09□□□□□ -0.63
NPHP4-201ENST00000378156 MRPL55Q7Z7F7 128 aaKnown RBP11.09□□□□□ -0.63
NPHP4-201ENST00000378156 SERP2Q8N6R1 65 aa11.09□□□□□ -0.63
NPHP4-201ENST00000378156 KLK5Q9Y337 293 aaPredicted RBP11.09□□□□□ -0.63
NPHP4-201ENST00000378156 POLQO75417 2590 aa11.09□□□□□ -0.63
NPHP4-201ENST00000378156 KLLNB2CW77 178 aa11.09□□□□□ -0.63
NPHP4-201ENST00000378156 CDKN2A-AS1Q9UH64 79 aa11.08□□□□□ -0.64
NPHP4-201ENST00000378156 DCANP1Q8TF63 244 aa11.08□□□□□ -0.64
NPHP4-201ENST00000378156 IBA57-AS1B1ANH7 110 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms