RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 Q8N6K4 173 aa3.54□□□□□ -1.84
SCN1A-202ENST00000375405 IGLV4-60A0A075B6I1 120 aa3.53□□□□□ -1.84
SCN1A-202ENST00000375405 SRRM5B3KS81 715 aa3.53□□□□□ -1.84
SCN1A-202ENST00000375405 NLRC5Q86WI3 1866 aa3.53□□□□□ -1.84
SCN1A-202ENST00000375405 TNFRSF13BO14836 293 aaPredicted RBP3.53□□□□□ -1.84
SCN1A-202ENST00000375405 ITGBL1O95965 494 aaPredicted RBP3.53□□□□□ -1.84
SCN1A-202ENST00000375405 TANC1Q9C0D5 1861 aa3.53□□□□□ -1.84
SCN1A-202ENST00000375405 C9orf129Q5T035 196 aaKnown RBP3.53□□□□□ -1.84
SCN1A-202ENST00000375405 C4orf3Q8WVX3 66 aa3.53□□□□□ -1.84
SCN1A-202ENST00000375405 ATP5EP56381 51 aaPredicted RBP3.53□□□□□ -1.84
SCN1A-202ENST00000375405 DHRS4-AS1Q9P1J3 65 aa3.53□□□□□ -1.84
SCN1A-202ENST00000375405 C15orf62A8K5M9 175 aa3.53□□□□□ -1.84
SCN1A-202ENST00000375405 C6orf99Q4VX62 202 aa3.53□□□□□ -1.84
SCN1A-202ENST00000375405 KPRPQ5T749 579 aaPredicted RBP3.53□□□□□ -1.84
SCN1A-202ENST00000375405 NDUFA11Q86Y39 141 aa3.53□□□□□ -1.84
SCN1A-202ENST00000375405 ADAMTSL3P82987 1691 aa3.53□□□□□ -1.84
SCN1A-202ENST00000375405 PKD1L2Q7Z442 2459 aa3.53□□□□□ -1.84
SCN1A-202ENST00000375405 A0A1B0GXF2 115 aa3.53□□□□□ -1.85
SCN1A-202ENST00000375405 LINC00575Q6W349 94 aa3.53□□□□□ -1.85
SCN1A-202ENST00000375405 LRRK2Q5S007 2527 aa3.52□□□□□ -1.85
SCN1A-202ENST00000375405 NOTCH2Q04721 2471 aa3.52□□□□□ -1.85
SCN1A-202ENST00000375405 ZNF833PQ6ZTB9 187 aa3.52□□□□□ -1.85
SCN1A-202ENST00000375405 Q9UF83 564 aa3.52□□□□□ -1.85
SCN1A-202ENST00000375405 TRBV6-6A0A0A6YYG2 114 aa3.52□□□□□ -1.85
SCN1A-202ENST00000375405 NDUFC1O43677 76 aa3.52□□□□□ -1.85
SCN1A-202ENST00000375405 TLN2Q9Y4G6 2542 aa3.52□□□□□ -1.85
SCN1A-202ENST00000375405 SMIM10L1P0DMW3 83 aa3.52□□□□□ -1.85
SCN1A-202ENST00000375405 COX8AP10176 69 aa3.52□□□□□ -1.85
SCN1A-202ENST00000375405 ZFAND2AQ8N6M9 145 aa3.52□□□□□ -1.85
SCN1A-202ENST00000375405 SMIM10Q96HG1 83 aa3.52□□□□□ -1.85
SCN1A-202ENST00000375405 ZNF106Q9H2Y7 1883 aaKnown RBP3.52□□□□□ -1.85
SCN1A-202ENST00000375405 C16orf90A8MZG2 172 aa3.52□□□□□ -1.85
SCN1A-202ENST00000375405 H0Y9P7 68 aa3.52□□□□□ -1.85
SCN1A-202ENST00000375405 TMEM190Q8WZ59 177 aa3.52□□□□□ -1.85
SCN1A-202ENST00000375405 CDIP1Q9H305 208 aa3.52□□□□□ -1.85
SCN1A-202ENST00000375405 LINC00271P0C7V0 271 aa3.52□□□□□ -1.85
SCN1A-202ENST00000375405 SPATA3Q8NHX4 192 aa3.52□□□□□ -1.85
SCN1A-202ENST00000375405 RAI1Q7Z5J4 1906 aaPredicted RBP3.52□□□□□ -1.85
SCN1A-202ENST00000375405 NDUFA4L2Q9NRX3 87 aa3.52□□□□□ -1.85
SCN1A-202ENST00000375405 IGLV4-3A0A075B6K6 122 aa3.51□□□□□ -1.85
SCN1A-202ENST00000375405 LINC00483Q53H64 154 aa3.51□□□□□ -1.85
SCN1A-202ENST00000375405 C11orf52Q96A22 123 aa3.51□□□□□ -1.85
SCN1A-202ENST00000375405 FNDC1Q4ZHG4 1894 aaPredicted RBP3.51□□□□□ -1.85
SCN1A-202ENST00000375405 PTPRBP23467 1997 aa3.51□□□□□ -1.85
SCN1A-202ENST00000375405 M0R378 163 aa3.51□□□□□ -1.85
SCN1A-202ENST00000375405 YPEL3P61236 119 aaPredicted RBP3.51□□□□□ -1.85
SCN1A-202ENST00000375405 COL11A2P13942 1736 aaPredicted RBP3.51□□□□□ -1.85
SCN1A-202ENST00000375405 ZFYVE26Q68DK2 2539 aa3.51□□□□□ -1.85
SCN1A-202ENST00000375405 A0A0G2JMZ2 1700 aa3.51□□□□□ -1.85
SCN1A-202ENST00000375405 LRRC37A2A6NM11 1700 aa3.51□□□□□ -1.85
SCN1A-202ENST00000375405 LRRC37AA6NMS7 1700 aa3.51□□□□□ -1.85
SCN1A-202ENST00000375405 IGLC6P0CF74 106 aa3.51□□□□□ -1.85
SCN1A-202ENST00000375405 CEMP1Q6PRD7 247 aaPredicted RBP3.51□□□□□ -1.85
SCN1A-202ENST00000375405 GLI3P10071 1580 aa3.51□□□□□ -1.85
SCN1A-202ENST00000375405 IGLV4-69A0A075B6H9 119 aa3.51□□□□□ -1.85
SCN1A-202ENST00000375405 HCG22E2RYF7 251 aa3.51□□□□□ -1.85
SCN1A-202ENST00000375405 LINC01545Q5VT33 79 aa3.51□□□□□ -1.85
SCN1A-202ENST00000375405 WDR83OSQ9Y284 106 aa3.51□□□□□ -1.85
SCN1A-202ENST00000375405 TRBV6-1A0A0K0K1D8 114 aa3.51□□□□□ -1.85
SCN1A-202ENST00000375405 U3KQK5 164 aa3.51□□□□□ -1.85
SCN1A-202ENST00000375405 PLXNA4Q9HCM2 1894 aa3.51□□□□□ -1.85
SCN1A-202ENST00000375405 TRBV7-7A0A0K0K1E9 115 aa3.5□□□□□ -1.85
SCN1A-202ENST00000375405 CD59P13987 128 aa3.5□□□□□ -1.85
SCN1A-202ENST00000375405 MRGPRG-AS1Q2M3A8 158 aa3.5□□□□□ -1.85
SCN1A-202ENST00000375405 CACNA1AO00555 2505 aa3.5□□□□□ -1.85
SCN1A-202ENST00000375405 C19orf71A6NCJ1 209 aa3.5□□□□□ -1.85
SCN1A-202ENST00000375405 LRP4O75096 1905 aa3.5□□□□□ -1.85
SCN1A-202ENST00000375405 IGLV11-55A0A075B6I3 123 aa3.5□□□□□ -1.85
SCN1A-202ENST00000375405 FXYD5Q96DB9 178 aa3.5□□□□□ -1.85
SCN1A-202ENST00000375405 CR1P17927 2039 aa3.5□□□□□ -1.85
SCN1A-202ENST00000375405 Q9BRP9 147 aa3.5□□□□□ -1.85
SCN1A-202ENST00000375405 ZNF702PQ9H963 129 aa3.5□□□□□ -1.85
SCN1A-202ENST00000375405 PTPRSQ13332 1948 aa3.5□□□□□ -1.85
SCN1A-202ENST00000375405 H3BRN7 92 aa3.5□□□□□ -1.85
SCN1A-202ENST00000375405 PROK1P58294 105 aa3.5□□□□□ -1.85
SCN1A-202ENST00000375405 PLXNA3P51805 1871 aa3.49□□□□□ -1.85
SCN1A-202ENST00000375405 MIAQ16674 131 aa3.49□□□□□ -1.85
SCN1A-202ENST00000375405 FAM19A4Q96LR4 140 aa3.49□□□□□ -1.85
SCN1A-202ENST00000375405 Q8N814 137 aa3.49□□□□□ -1.85
SCN1A-202ENST00000375405 LINC00114Q6XXX2 140 aa3.49□□□□□ -1.85
SCN1A-202ENST00000375405 ZNF575Q86XF7 245 aa3.49□□□□□ -1.85
SCN1A-202ENST00000375405 C18orf32Q8TCD1 76 aa3.49□□□□□ -1.85
SCN1A-202ENST00000375405 AHDC1Q5TGY3 1603 aaPredicted RBP3.49□□□□□ -1.85
SCN1A-202ENST00000375405 NRACQ8N912 160 aa3.49□□□□□ -1.85
SCN1A-202ENST00000375405 H3BUA1 57 aa3.49□□□□□ -1.85
SCN1A-202ENST00000375405 ZNF726P1Q15940 193 aa3.49□□□□□ -1.85
SCN1A-202ENST00000375405 TYMSOSQ8TAI1 123 aa3.49□□□□□ -1.85
SCN1A-202ENST00000375405 ZNF524Q96C55 264 aa3.49□□□□□ -1.85
SCN1A-202ENST00000375405 TRBV6-5A0A0K0K1A5 114 aa3.48□□□□□ -1.85
SCN1A-202ENST00000375405 C9orf92A6NGG3 77 aa3.48□□□□□ -1.85
SCN1A-202ENST00000375405 Q6ZTI0 123 aa3.48□□□□□ -1.85
SCN1A-202ENST00000375405 COL24A1Q17RW2 1714 aa3.48□□□□□ -1.85
SCN1A-202ENST00000375405 LINC00643Q86TS7 51 aa3.48□□□□□ -1.85
SCN1A-202ENST00000375405 TLN1Q9Y490 2541 aaKnown RBP3.48□□□□□ -1.85
SCN1A-202ENST00000375405 SMIM26A0A096LP01 95 aa3.48□□□□□ -1.85
SCN1A-202ENST00000375405 LY6G6DO95868 133 aa3.48□□□□□ -1.85
SCN1A-202ENST00000375405 DEFB1P60022 68 aa3.48□□□□□ -1.85
SCN1A-202ENST00000375405 Q6ZRM9 215 aa3.48□□□□□ -1.85
SCN1A-202ENST00000375405 PLA2G2EQ9NZK7 142 aa3.48□□□□□ -1.85
SCN1A-202ENST00000375405 UQCRQO14949 82 aa3.48□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 74.6 ms